Wall clock time and date at job start Tue Mar 31 2020 15:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35955 * 116.99632 * 2 1 4 4 C 1.38898 * 119.93918 * 0.02562 * 3 2 1 5 5 C 1.38249 * 120.28272 * 179.97438 * 4 3 2 6 6 Cl 1.73594 * 119.91936 * 179.97438 * 5 4 3 7 7 C 1.38433 * 120.16070 * 0.02562 * 5 4 3 8 8 F 1.35093 * 120.06235 * 180.02562 * 7 5 4 9 9 C 1.39824 * 119.87089 * 359.97438 * 7 5 4 10 10 C 1.47582 * 120.13460 * 179.97438 * 9 7 5 11 11 O 1.21481 * 120.00124 * 0.02562 * 10 9 7 12 12 O 1.34730 * 119.99511 * 179.97438 * 10 9 7 13 13 C 1.45205 * 116.99747 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47008 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99755 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99594 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99896 * 179.97438 * 16 14 13 18 18 H 1.08008 * 119.99655 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00462 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00111 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99664 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46818 * 90.00106 * 21 19 17 23 23 H 1.48499 * 109.47130 * 210.00095 * 21 19 17 24 24 H 1.48494 * 109.47138 * 330.00143 * 21 19 17 25 25 C 1.38313 * 119.93342 * 179.72573 * 3 2 1 26 26 H 1.08996 * 109.47352 * 299.99784 * 1 2 3 27 27 H 1.08996 * 109.47452 * 60.00237 * 1 2 3 28 28 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.85625 * 359.97438 * 4 3 2 30 30 H 1.09002 * 109.46818 * 300.00148 * 13 12 10 31 31 H 1.08993 * 109.47115 * 59.99793 * 13 12 10 32 32 H 0.96997 * 120.00387 * 0.02562 * 16 14 13 33 33 H 0.97003 * 119.99641 * 180.02562 * 20 19 17 34 34 H 1.08003 * 120.08830 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2884 2.3755 0.0005 5 6 1.9085 3.6110 0.0011 6 17 0.9522 5.0598 0.0011 7 6 3.2902 3.6957 0.0005 8 9 3.8942 4.9042 0.0016 9 6 4.0595 2.5281 0.0000 10 6 5.5330 2.6117 -0.0011 11 8 6.0799 3.6964 -0.0011 12 8 6.2715 1.4848 -0.0011 13 6 7.7149 1.6427 -0.0017 14 6 8.3687 0.2848 -0.0022 15 8 7.6854 -0.7172 -0.0017 16 7 9.7127 0.1842 -0.0033 17 6 10.3076 -1.0510 -0.0033 18 1 9.6991 -1.9434 -0.0028 19 6 11.6932 -1.1550 -0.0039 20 7 12.2633 -2.3389 -0.0044 21 14 12.7455 0.3885 -0.0040 22 1 13.0249 0.7971 1.3960 23 1 14.0259 0.1146 -0.7047 24 1 12.0223 1.4806 -0.7035 25 6 3.4275 1.2823 0.0057 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2101 2.3150 0.0005 30 1 8.0198 2.1928 -0.8920 31 1 8.0205 2.1932 0.8880 32 1 10.2592 0.9856 -0.0034 33 1 13.2306 -2.4114 -0.0044 34 1 4.0161 0.3768 0.0098 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840613311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:56 Heat of formation + Delta-G solvation = -166.391337 kcal Electronic energy + Delta-G solvation = -24854.923163 eV Core-core repulsion = 20501.858116 eV Total energy + Delta-G solvation = -4353.065047 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.20570 -40.90098 -40.17037 -38.41080 -37.87893 -36.83556 -36.23090 -34.07865 -32.06957 -31.79409 -30.46872 -28.71272 -27.72443 -25.09695 -24.18142 -23.13141 -21.29535 -19.68029 -19.01591 -18.60536 -17.87940 -17.68423 -17.24694 -16.73522 -16.26203 -16.24553 -15.80178 -15.71410 -15.39782 -14.96380 -14.72831 -14.20598 -14.03087 -13.63459 -13.45871 -13.38869 -12.95233 -12.72290 -12.58534 -12.36490 -12.30087 -12.20633 -11.75572 -11.56093 -11.27380 -11.15731 -10.70029 -10.65373 -10.60177 -10.05727 -9.68663 -9.63974 -8.69272 -8.66747 -8.30334 -6.39949 -3.92969 -0.01358 0.49309 1.37672 2.15564 2.36236 2.69707 2.98833 3.03461 3.04284 3.12336 3.53782 3.55642 4.00144 4.04044 4.23252 4.36449 4.47382 4.64743 4.69393 4.76816 4.90351 5.07169 5.10205 5.17346 5.33193 5.46674 5.51569 5.62506 5.65469 5.82065 6.31446 6.73323 7.42575 7.61191 7.99540 8.46458 8.82678 9.28855 9.63744 10.72216 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.002610 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.850452 B =10724.603230 C =12114.006916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.300 6.300 3 C 0.122 3.878 4 C -0.144 4.144 5 C -0.051 4.051 6 Cl -0.036 7.036 7 C 0.136 3.864 8 F -0.102 7.102 9 C -0.105 4.105 10 C 0.508 3.492 11 O -0.489 6.489 12 O -0.315 6.315 13 C 0.059 3.941 14 C 0.448 3.552 15 O -0.556 6.556 16 N -0.578 5.578 17 C -0.308 4.308 18 H 0.123 0.877 19 C 0.045 3.955 20 N -0.874 5.874 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.268 1.268 25 C -0.055 4.055 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.155 0.845 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.373 0.627 33 H 0.276 0.724 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.222 12.191 0.035 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.213 6.213 3 C 0.075 3.925 4 C -0.163 4.163 5 C -0.079 4.079 6 Cl -0.007 7.007 7 C 0.115 3.885 8 F -0.080 7.080 9 C -0.108 4.108 10 C 0.351 3.649 11 O -0.378 6.378 12 O -0.229 6.229 13 C -0.019 4.019 14 C 0.233 3.767 15 O -0.438 6.438 16 N -0.218 5.218 17 C -0.436 4.436 18 H 0.140 0.860 19 C -0.159 4.159 20 N -0.513 5.513 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.193 1.193 25 C -0.074 4.074 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.172 0.828 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.207 0.793 33 H 0.086 0.914 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -24.261 11.652 0.034 26.914 hybrid contribution 0.868 1.759 -0.018 1.961 sum -23.393 13.411 0.016 26.965 Atomic orbital electron populations 1.23213 0.77650 1.04901 1.01592 1.86222 1.21868 1.24937 1.88274 1.18645 0.91739 0.84492 0.97584 1.21224 1.01512 0.89572 1.03999 1.20416 0.89570 0.89765 1.08153 1.98407 1.70465 1.34969 1.96832 1.17127 0.88423 0.80844 1.02099 1.91639 1.83070 1.40409 1.92854 1.18792 0.90613 0.92290 1.09066 1.20552 0.87467 0.82863 0.74052 1.90910 1.73098 1.28972 1.44814 1.86580 1.20236 1.33077 1.83043 1.22841 0.76203 0.98861 1.03967 1.19126 0.83007 0.88958 0.85644 1.90605 1.62318 1.37309 1.53573 1.42025 1.04603 1.08741 1.66460 1.19423 0.90961 0.84549 1.48706 0.85962 1.25037 0.96466 0.97129 0.97228 1.69612 1.11177 1.22270 1.48283 0.86682 0.81116 0.82621 0.79118 1.19388 1.19951 1.19310 1.20913 0.91890 0.98258 0.96306 0.92209 0.92215 0.87432 0.82777 0.89073 0.89056 0.79345 0.91369 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.65 10.49 -19.60 -0.21 -2.86 16 3 C 0.12 1.15 6.68 -39.31 -0.26 0.89 16 4 C -0.14 -1.14 8.81 -39.33 -0.35 -1.49 16 5 C -0.05 -0.50 6.32 -39.51 -0.25 -0.75 16 6 Cl -0.04 -0.32 28.60 -51.86 -1.48 -1.80 16 7 C 0.14 1.68 7.26 -38.92 -0.28 1.39 16 8 F -0.10 -1.43 15.10 2.25 0.03 -1.40 16 9 C -0.11 -1.37 5.88 -104.95 -0.62 -1.99 16 10 C 0.51 8.01 7.89 34.54 0.27 8.29 16 11 O -0.49 -8.54 15.12 -19.25 -0.29 -8.83 16 12 O -0.31 -5.49 9.00 -47.25 -0.43 -5.92 16 13 C 0.06 1.03 5.95 36.01 0.21 1.24 16 14 C 0.45 10.13 7.86 -10.98 -0.09 10.05 16 15 O -0.56 -14.86 16.08 -14.11 -0.23 -15.09 16 16 N -0.58 -13.51 5.09 -10.96 -0.06 -13.57 16 17 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 18 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 19 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 20 N -0.87 -24.94 13.96 55.50 0.77 -24.17 16 21 Si 0.88 18.90 27.74 -169.99 -4.71 14.19 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 25 C -0.05 -0.63 9.55 -39.01 -0.37 -1.00 16 26 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 27 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 28 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.15 0.76 6.27 -52.49 -0.33 0.44 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 33 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.17 2.08 7.61 -52.48 -0.40 1.68 16 LS Contribution 328.65 15.07 4.95 4.95 Total: -1.00 -33.49 328.65 -5.21 -38.70 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -2.58 Total: 5.62 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -0.99 Total: 10.17 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.72 Total: -37.74 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.15 Total: -32.70 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.03 Total: -1.40 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.19 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.48 Total: -1.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.49 -5.21 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840613311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.688 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds