Wall clock time and date at job start Tue Mar 31 2020 15:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35955 * 116.99632 * 2 1 4 4 C 1.38898 * 119.93918 * 0.02562 * 3 2 1 5 5 C 1.38249 * 120.28272 * 179.97438 * 4 3 2 6 6 Cl 1.73594 * 119.91936 * 179.97438 * 5 4 3 7 7 C 1.38433 * 120.16070 * 0.02562 * 5 4 3 8 8 F 1.35093 * 120.06235 * 180.02562 * 7 5 4 9 9 C 1.39824 * 119.87089 * 359.97438 * 7 5 4 10 10 C 1.47582 * 120.13460 * 179.97438 * 9 7 5 11 11 O 1.21481 * 120.00124 * 0.02562 * 10 9 7 12 12 O 1.34730 * 119.99511 * 179.97438 * 10 9 7 13 13 C 1.45205 * 116.99747 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47008 * 180.02562 * 13 12 10 15 15 O 1.21284 * 119.99755 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99594 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99896 * 179.97438 * 16 14 13 18 18 H 1.08008 * 119.99655 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00462 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00111 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99664 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46818 * 90.00106 * 21 19 17 23 23 H 1.48499 * 109.47130 * 210.00095 * 21 19 17 24 24 H 1.48494 * 109.47138 * 330.00143 * 21 19 17 25 25 C 1.38313 * 119.93342 * 179.72573 * 3 2 1 26 26 H 1.08996 * 109.47352 * 299.99784 * 1 2 3 27 27 H 1.08996 * 109.47452 * 60.00237 * 1 2 3 28 28 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 29 29 H 1.07994 * 119.85625 * 359.97438 * 4 3 2 30 30 H 1.09002 * 109.46818 * 300.00148 * 13 12 10 31 31 H 1.08993 * 109.47115 * 59.99793 * 13 12 10 32 32 H 0.96997 * 120.00387 * 0.02562 * 16 14 13 33 33 H 0.97003 * 119.99641 * 180.02562 * 20 19 17 34 34 H 1.08003 * 120.08830 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2884 2.3755 0.0005 5 6 1.9085 3.6110 0.0011 6 17 0.9522 5.0598 0.0011 7 6 3.2902 3.6957 0.0005 8 9 3.8942 4.9042 0.0016 9 6 4.0595 2.5281 0.0000 10 6 5.5330 2.6117 -0.0011 11 8 6.0799 3.6964 -0.0011 12 8 6.2715 1.4848 -0.0011 13 6 7.7149 1.6427 -0.0017 14 6 8.3687 0.2848 -0.0022 15 8 7.6854 -0.7172 -0.0017 16 7 9.7127 0.1842 -0.0033 17 6 10.3076 -1.0510 -0.0033 18 1 9.6991 -1.9434 -0.0028 19 6 11.6932 -1.1550 -0.0039 20 7 12.2633 -2.3389 -0.0044 21 14 12.7455 0.3885 -0.0040 22 1 13.0249 0.7971 1.3960 23 1 14.0259 0.1146 -0.7047 24 1 12.0223 1.4806 -0.7035 25 6 3.4275 1.2823 0.0057 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2101 2.3150 0.0005 30 1 8.0198 2.1928 -0.8920 31 1 8.0205 2.1932 0.8880 32 1 10.2592 0.9856 -0.0034 33 1 13.2306 -2.4114 -0.0044 34 1 4.0161 0.3768 0.0098 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840613311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:56 Heat of formation + Delta-G solvation = -188.952936 kcal Electronic energy + Delta-G solvation = -24855.901507 eV Core-core repulsion = 20501.858116 eV Total energy + Delta-G solvation = -4354.043391 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -50.17785 -41.95309 -41.16082 -40.18318 -38.67064 -37.73954 -37.45737 -36.08861 -33.87127 -32.92304 -31.23897 -30.22873 -28.26306 -26.67748 -25.43727 -24.03333 -22.33866 -21.55599 -20.55087 -19.92012 -18.85986 -18.60779 -18.27933 -17.94832 -17.61537 -17.25424 -17.10175 -16.66773 -16.59307 -16.27867 -15.81211 -15.64161 -15.36190 -14.81027 -14.61134 -14.27096 -14.23057 -14.21585 -14.01313 -13.75487 -13.38056 -13.01837 -12.97833 -12.45794 -12.43046 -12.22589 -12.01270 -11.96404 -11.89336 -11.85377 -11.58876 -10.62149 -10.43874 -10.34137 -9.45458 -8.45863 -6.08925 -0.90549 -0.33390 0.57994 1.10033 1.16142 1.31110 1.33968 1.44753 1.75010 2.06510 2.12839 2.20400 2.67111 2.72689 3.08551 3.25262 3.52244 3.54280 3.78285 3.89060 4.02259 4.08655 4.11058 4.28743 4.44349 4.44552 4.65675 4.76793 4.82591 4.95225 5.07658 5.46943 5.85253 6.12805 6.33529 6.50464 6.76959 7.25356 7.76564 8.70616 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.002610 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.850452 B =10724.603230 C =12114.006916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.318 6.318 3 C 0.131 3.869 4 C -0.119 4.119 5 C -0.046 4.046 6 Cl -0.023 7.023 7 C 0.120 3.880 8 F -0.116 7.116 9 C -0.119 4.119 10 C 0.511 3.489 11 O -0.509 6.509 12 O -0.331 6.331 13 C 0.067 3.933 14 C 0.450 3.550 15 O -0.605 6.605 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.062 0.938 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.960 3.040 22 H -0.255 1.255 23 H -0.272 1.272 24 H -0.231 1.231 25 C -0.065 4.065 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.192 0.808 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.393 0.607 33 H 0.282 0.718 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.782 14.941 -0.001 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.232 6.232 3 C 0.084 3.916 4 C -0.138 4.138 5 C -0.074 4.074 6 Cl 0.006 6.994 7 C 0.100 3.900 8 F -0.094 7.094 9 C -0.121 4.121 10 C 0.356 3.644 11 O -0.398 6.398 12 O -0.246 6.246 13 C -0.010 4.010 14 C 0.237 3.763 15 O -0.490 6.490 16 N -0.217 5.217 17 C -0.461 4.461 18 H 0.080 0.920 19 C -0.207 4.207 20 N -0.564 5.564 21 Si 0.780 3.220 22 H -0.180 1.180 23 H -0.197 1.197 24 H -0.155 1.155 25 C -0.084 4.084 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.139 0.861 29 H 0.209 0.791 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.229 0.771 33 H 0.092 0.908 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -25.851 14.418 -0.003 29.600 hybrid contribution 1.121 0.758 -0.003 1.353 sum -24.729 15.176 -0.006 29.015 Atomic orbital electron populations 1.23609 0.75162 1.06576 1.03322 1.86224 1.24464 1.24583 1.87888 1.18584 0.91032 0.85438 0.96501 1.21543 1.03118 0.88013 1.01161 1.20478 0.88726 0.90878 1.07349 1.98417 1.69783 1.34464 1.96722 1.17281 0.89367 0.80006 1.03396 1.91594 1.83533 1.41150 1.93169 1.18612 0.88997 0.93262 1.11272 1.20933 0.88359 0.81970 0.73128 1.90887 1.73635 1.29287 1.46034 1.86578 1.20188 1.34377 1.83490 1.22716 0.76424 0.95141 1.06722 1.20062 0.82624 0.90564 0.83060 1.90583 1.63449 1.39860 1.55058 1.41798 1.05170 1.07948 1.66794 1.19004 0.91358 0.84671 1.51064 0.91965 1.26071 0.97436 1.01607 0.95591 1.69778 1.12035 1.25572 1.49062 0.85434 0.78510 0.77938 0.80159 1.17952 1.19721 1.15474 1.20790 0.93103 0.97166 0.97304 0.90398 0.90408 0.86073 0.79058 0.86246 0.86141 0.77067 0.90816 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -5.03 10.49 -93.04 -0.98 -6.00 16 3 C 0.13 2.26 6.68 22.45 0.15 2.41 16 4 C -0.12 -1.54 8.81 22.43 0.20 -1.34 16 5 C -0.05 -0.81 6.32 22.32 0.14 -0.67 16 6 Cl -0.02 -0.35 28.60 -2.72 -0.08 -0.43 16 7 C 0.12 2.86 7.26 22.70 0.16 3.03 16 8 F -0.12 -3.21 15.10 44.97 0.68 -2.54 16 9 C -0.12 -3.09 5.88 -20.07 -0.12 -3.20 16 10 C 0.51 16.08 7.89 70.29 0.55 16.63 16 11 O -0.51 -17.40 15.12 19.90 0.30 -17.10 16 12 O -0.33 -11.59 9.00 -50.02 -0.45 -12.04 16 13 C 0.07 2.26 5.95 71.24 0.42 2.68 16 14 C 0.45 20.61 7.86 87.66 0.69 21.30 16 15 O -0.61 -33.83 16.08 15.76 0.25 -33.58 16 16 N -0.58 -26.87 5.09 -306.98 -1.56 -28.43 16 17 C -0.33 -19.10 10.16 84.04 0.85 -18.25 16 18 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 19 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 20 N -0.92 -54.50 13.96 21.66 0.30 -54.20 16 21 Si 0.96 37.89 27.74 68.60 1.90 39.79 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 23 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 25 C -0.06 -1.48 9.55 22.64 0.22 -1.26 16 26 H 0.08 0.19 7.65 -2.39 -0.02 0.17 16 27 H 0.08 0.19 7.66 -2.39 -0.02 0.17 16 28 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.19 0.99 6.27 -2.91 -0.02 0.97 16 30 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 33 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.16 4.02 7.61 -2.91 -0.02 3.99 16 Total: -1.00 -78.08 328.65 5.82 -72.25 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.60 Total: 19.72 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 4.85 Total: 22.56 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -1.26 Total: -82.63 kcal Atomic # 8 Polarization: -67.85 SS G_CDS: -0.87 Total: -68.72 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.68 Total: -2.54 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 1.90 Total: 39.79 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -78.08 5.82 -72.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840613311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.701 kcal (2) G-P(sol) polarization free energy of solvation -78.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds