Wall clock time and date at job start Tue Mar 31 2020 16:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00379 * 2 1 4 4 H 1.48497 * 109.47391 * 270.00031 * 3 2 1 5 5 H 1.48502 * 109.47214 * 30.00027 * 3 2 1 6 6 H 1.48500 * 109.47462 * 150.00033 * 3 2 1 7 7 C 1.37885 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99905 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50362 * 59.91502 * 9 7 2 11 11 C 1.53123 * 109.49971 * 299.79715 * 9 7 2 12 12 C 1.53112 * 109.15786 * 182.40581 * 11 9 7 13 13 C 1.53033 * 109.27948 * 57.65600 * 12 11 9 14 14 N 1.46840 * 109.52531 * 300.81966 * 13 12 11 15 15 C 1.46898 * 111.00333 * 185.83844 * 14 13 12 16 16 N 1.46504 * 109.47198 * 30.78940 * 15 14 13 17 17 N 1.28378 * 119.14220 * 74.99868 * 16 15 14 18 18 C 1.30360 * 122.49011 * 180.02562 * 17 16 15 19 19 C 1.40613 * 120.44600 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.86668 * 179.97438 * 19 18 17 21 21 C 1.36868 * 118.26188 * 0.23295 * 19 18 17 22 22 Cl 1.73597 * 121.11325 * 179.72786 * 21 19 18 23 23 C 1.34658 * 119.14397 * 255.02658 * 16 15 14 24 24 O 1.22088 * 120.34388 * 359.97159 * 23 16 15 25 25 C 1.46853 * 111.19911 * 61.74129 * 14 13 12 26 26 H 0.97003 * 119.99705 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.52625 * 302.31318 * 11 9 7 28 28 H 1.09006 * 109.52267 * 62.50246 * 11 9 7 29 29 H 1.09010 * 109.50168 * 177.59932 * 12 11 9 30 30 H 1.09002 * 109.50649 * 297.70933 * 12 11 9 31 31 H 1.09002 * 109.46320 * 180.80307 * 13 12 11 32 32 H 1.09004 * 109.46150 * 60.83953 * 13 12 11 33 33 H 1.08997 * 109.47160 * 270.79359 * 15 14 13 34 34 H 1.09000 * 109.47314 * 150.78901 * 15 14 13 35 35 H 1.08003 * 119.77862 * 179.97438 * 18 17 16 36 36 H 1.08993 * 109.45726 * 58.27475 * 25 14 13 37 37 H 1.09000 * 109.46331 * 178.24516 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6233 -2.5570 -0.8887 11 6 0.3737 -2.5829 1.2528 12 6 -0.3420 -3.9363 1.2754 13 6 0.6979 -5.0584 1.2390 14 7 1.5109 -4.9348 0.0225 15 6 2.4280 -6.0740 -0.1159 16 7 1.8210 -7.2652 0.4832 17 7 0.8750 -7.8666 -0.1424 18 6 0.2888 -8.9308 0.3301 19 6 0.6799 -9.4690 1.5689 20 17 -0.0936 -10.8853 2.2088 21 6 1.6828 -8.8440 2.2594 22 17 2.2193 -9.4410 3.7987 23 6 2.2694 -7.7004 1.6760 24 8 3.1707 -7.1090 2.2492 25 6 2.2447 -3.6630 0.0012 26 1 -0.4850 0.8401 0.0004 27 1 0.9971 -2.4856 2.1415 28 1 -0.3643 -1.7808 1.2348 29 1 -0.9351 -4.0191 2.1863 30 1 -0.9953 -4.0172 0.4066 31 1 0.1911 -6.0235 1.2406 32 1 1.3420 -4.9852 2.1154 33 1 3.3657 -5.8494 0.3924 34 1 2.6224 -6.2577 -1.1726 35 1 -0.5032 -9.4018 -0.2332 36 1 2.8815 -3.5964 0.8832 37 1 2.8613 -3.6144 -0.8964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853525596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:06 Heat of formation + Delta-G solvation = 35.833032 kcal Electronic energy + Delta-G solvation = -24206.513913 eV Core-core repulsion = 20458.680194 eV Total energy + Delta-G solvation = -3747.833720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56355 -38.44695 -38.23637 -37.58678 -36.97574 -34.89661 -33.17933 -31.84067 -31.21791 -29.91900 -27.12092 -25.17892 -24.99189 -24.05498 -22.11755 -21.43004 -19.33517 -18.64493 -18.22782 -17.31215 -17.20498 -16.32462 -15.90505 -14.93023 -14.88796 -14.53924 -14.38911 -13.94705 -13.74311 -13.55478 -13.30968 -13.24713 -12.56925 -12.50670 -12.21661 -12.14585 -12.01392 -11.70772 -11.48712 -11.31270 -10.98071 -10.79019 -10.73020 -10.29071 -10.27116 -10.12917 -9.89796 -9.54427 -9.20269 -8.86019 -8.78312 -8.34738 -7.93561 -6.01131 -4.07490 -0.24589 1.09446 1.11042 1.33737 2.01640 2.78842 3.29744 3.36709 3.39767 3.51930 4.07112 4.15121 4.33262 4.45212 4.84088 5.01519 5.25677 5.29175 5.31747 5.44842 5.47276 5.68350 5.90657 6.10021 6.25363 6.36541 6.58360 6.64756 6.80626 7.05050 7.13567 7.20107 7.42568 7.52729 7.71807 7.74459 8.00298 8.10676 8.41264 8.95905 9.57138 11.05029 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.026244 B = 0.002925 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.657872 B = 9571.591518 C = 9817.879818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.058 3.942 10 H 0.037 0.963 11 C -0.111 4.111 12 C -0.113 4.113 13 C 0.061 3.939 14 N -0.537 5.537 15 C 0.276 3.724 16 N -0.335 5.335 17 N -0.164 5.164 18 C 0.033 3.967 19 C 0.018 3.982 20 Cl -0.012 7.012 21 C -0.119 4.119 22 Cl 0.007 6.993 23 C 0.494 3.506 24 O -0.496 6.496 25 C 0.067 3.933 26 H 0.260 0.740 27 H 0.031 0.969 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.204 0.796 36 H 0.028 0.972 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -22.296 2.062 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.040 3.960 10 H 0.056 0.944 11 C -0.150 4.150 12 C -0.151 4.151 13 C -0.067 4.067 14 N -0.264 5.264 15 C 0.068 3.932 16 N -0.157 5.157 17 N 0.013 4.987 18 C -0.158 4.158 19 C -0.017 4.017 20 Cl 0.018 6.982 21 C -0.160 4.160 22 Cl 0.037 6.963 23 C 0.288 3.712 24 O -0.371 6.371 25 C -0.060 4.060 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.221 0.779 36 H 0.047 0.953 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.628 -21.352 1.484 21.412 hybrid contribution 0.950 0.121 1.684 1.937 sum 0.322 -21.231 3.168 21.468 Atomic orbital electron populations 1.69886 1.05857 1.26433 1.50424 1.24927 0.94841 0.99004 0.94999 0.86604 0.79861 0.83492 0.78091 1.20664 1.21267 1.19976 1.21108 0.92876 0.90471 1.51056 0.92697 1.18651 0.92460 0.89939 0.94990 0.94440 1.21679 1.00134 0.94547 0.98596 1.21646 0.96904 0.96157 1.00401 1.22047 0.95888 0.98776 0.90036 1.62632 1.23295 1.01853 1.38666 1.22979 0.93218 0.77473 0.99553 1.47090 1.27324 1.25087 1.16225 1.71115 0.98030 1.05340 1.24219 1.23515 1.03785 0.94504 0.93951 1.22482 0.93451 0.91130 0.94641 1.98440 1.78728 1.35559 1.85496 1.22235 1.00854 0.98902 0.93962 1.98411 1.89002 1.85559 1.23369 1.17347 0.85804 0.85750 0.82261 1.91090 1.28929 1.57288 1.59780 1.22455 0.96794 0.87181 0.99567 0.92989 0.95010 0.88832 0.93425 0.91805 0.93532 0.95353 0.89400 0.86790 0.77926 0.95343 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 11.36 55.43 0.63 -24.27 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -13.84 8.56 -34.44 -0.29 -14.13 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 12 C -0.11 -2.23 6.09 -26.66 -0.16 -2.39 16 13 C 0.06 1.10 4.55 -3.84 -0.02 1.08 16 14 N -0.54 -9.58 4.91 -238.58 -1.17 -10.75 16 15 C 0.28 4.05 6.21 -63.31 -0.39 3.66 16 16 N -0.33 -4.59 1.92 -66.35 -0.13 -4.72 16 17 N -0.16 -1.92 10.18 30.70 0.31 -1.61 16 18 C 0.03 0.29 11.15 -17.28 -0.19 0.10 16 19 C 0.02 0.17 6.37 -39.18 -0.25 -0.08 16 20 Cl -0.01 -0.09 28.16 -51.86 -1.46 -1.55 16 21 C -0.12 -1.45 6.40 -38.97 -0.25 -1.70 16 22 Cl 0.01 0.09 27.80 -51.86 -1.44 -1.36 16 23 C 0.49 7.24 6.73 -15.21 -0.10 7.13 16 24 O -0.50 -8.75 16.02 4.84 0.08 -8.67 16 25 C 0.07 1.35 4.52 -3.83 -0.02 1.34 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 29 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.78 6.16 -51.93 -0.32 0.46 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.34 6.69 -51.93 -0.35 1.00 16 34 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.20 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -29.46 332.62 -9.64 -39.09 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.33 Total: -2.30 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.11 Total: -4.89 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.36 Total: -41.34 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -2.90 Total: -2.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.46 -9.64 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.927 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds