Wall clock time and date at job start Tue Mar 31 2020 16:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00379 * 2 1 4 4 H 1.48497 * 109.47391 * 270.00031 * 3 2 1 5 5 H 1.48502 * 109.47214 * 30.00027 * 3 2 1 6 6 H 1.48500 * 109.47462 * 150.00033 * 3 2 1 7 7 C 1.37885 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99905 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50362 * 59.91502 * 9 7 2 11 11 C 1.53123 * 109.49971 * 299.79715 * 9 7 2 12 12 C 1.53112 * 109.15786 * 182.40581 * 11 9 7 13 13 C 1.53033 * 109.27948 * 57.65600 * 12 11 9 14 14 N 1.46840 * 109.52531 * 300.81966 * 13 12 11 15 15 C 1.46898 * 111.00333 * 185.83844 * 14 13 12 16 16 N 1.46504 * 109.47198 * 30.78940 * 15 14 13 17 17 N 1.28378 * 119.14220 * 74.99868 * 16 15 14 18 18 C 1.30360 * 122.49011 * 180.02562 * 17 16 15 19 19 C 1.40613 * 120.44600 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 120.86668 * 179.97438 * 19 18 17 21 21 C 1.36868 * 118.26188 * 0.23295 * 19 18 17 22 22 Cl 1.73597 * 121.11325 * 179.72786 * 21 19 18 23 23 C 1.34658 * 119.14397 * 255.02658 * 16 15 14 24 24 O 1.22088 * 120.34388 * 359.97159 * 23 16 15 25 25 C 1.46853 * 111.19911 * 61.74129 * 14 13 12 26 26 H 0.97003 * 119.99705 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.52625 * 302.31318 * 11 9 7 28 28 H 1.09006 * 109.52267 * 62.50246 * 11 9 7 29 29 H 1.09010 * 109.50168 * 177.59932 * 12 11 9 30 30 H 1.09002 * 109.50649 * 297.70933 * 12 11 9 31 31 H 1.09002 * 109.46320 * 180.80307 * 13 12 11 32 32 H 1.09004 * 109.46150 * 60.83953 * 13 12 11 33 33 H 1.08997 * 109.47160 * 270.79359 * 15 14 13 34 34 H 1.09000 * 109.47314 * 150.78901 * 15 14 13 35 35 H 1.08003 * 119.77862 * 179.97438 * 18 17 16 36 36 H 1.08993 * 109.45726 * 58.27475 * 25 14 13 37 37 H 1.09000 * 109.46331 * 178.24516 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6233 -2.5570 -0.8887 11 6 0.3737 -2.5829 1.2528 12 6 -0.3420 -3.9363 1.2754 13 6 0.6979 -5.0584 1.2390 14 7 1.5109 -4.9348 0.0225 15 6 2.4280 -6.0740 -0.1159 16 7 1.8210 -7.2652 0.4832 17 7 0.8750 -7.8666 -0.1424 18 6 0.2888 -8.9308 0.3301 19 6 0.6799 -9.4690 1.5689 20 17 -0.0936 -10.8853 2.2088 21 6 1.6828 -8.8440 2.2594 22 17 2.2193 -9.4410 3.7987 23 6 2.2694 -7.7004 1.6760 24 8 3.1707 -7.1090 2.2492 25 6 2.2447 -3.6630 0.0012 26 1 -0.4850 0.8401 0.0004 27 1 0.9971 -2.4856 2.1415 28 1 -0.3643 -1.7808 1.2348 29 1 -0.9351 -4.0191 2.1863 30 1 -0.9953 -4.0172 0.4066 31 1 0.1911 -6.0235 1.2406 32 1 1.3420 -4.9852 2.1154 33 1 3.3657 -5.8494 0.3924 34 1 2.6224 -6.2577 -1.1726 35 1 -0.5032 -9.4018 -0.2332 36 1 2.8815 -3.5964 0.8832 37 1 2.8613 -3.6144 -0.8964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:06 Heat of formation + Delta-G solvation = 18.220602 kcal Electronic energy + Delta-G solvation = -24207.277645 eV Core-core repulsion = 20458.680194 eV Total energy + Delta-G solvation = -3748.597452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.54990 -39.88160 -39.30761 -38.49168 -37.83313 -36.21666 -34.77911 -33.26661 -32.37103 -31.72370 -28.30410 -27.00355 -26.10618 -25.18175 -23.69426 -23.05246 -20.59059 -20.09399 -19.27807 -18.57582 -18.17177 -18.09781 -17.01126 -16.51831 -16.22429 -15.81621 -15.63763 -15.30501 -15.01261 -14.81230 -14.61926 -14.52518 -14.18306 -13.85511 -13.66177 -13.34056 -13.21494 -12.96618 -12.86383 -12.65678 -12.55900 -12.33390 -12.16124 -11.95469 -11.81432 -11.45543 -11.29526 -11.11268 -10.93565 -10.71929 -10.39831 -9.88728 -9.41163 -8.08601 -6.21943 -1.14430 0.21364 0.27332 0.44687 1.04899 1.42275 1.43425 1.52951 1.83974 2.42676 2.61660 2.83317 3.19331 3.26126 3.45044 3.82038 3.88688 4.02482 4.12909 4.15728 4.29158 4.35697 4.45496 4.57156 4.72298 4.74778 4.87176 4.92334 5.07289 5.28462 5.42062 5.62454 5.78221 5.93248 6.01418 6.08806 6.13450 6.39509 6.81162 6.89151 7.45845 8.96405 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.026244 B = 0.002925 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.657872 B = 9571.591518 C = 9817.879818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.057 3.943 10 H 0.008 0.992 11 C -0.104 4.104 12 C -0.105 4.105 13 C 0.072 3.928 14 N -0.539 5.539 15 C 0.280 3.720 16 N -0.341 5.341 17 N -0.187 5.187 18 C 0.062 3.938 19 C 0.037 3.963 20 Cl 0.016 6.984 21 C -0.139 4.139 22 Cl 0.005 6.995 23 C 0.488 3.512 24 O -0.541 6.541 25 C 0.081 3.919 26 H 0.261 0.739 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.011 0.989 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.250 0.750 36 H 0.016 0.984 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.445 -24.380 1.504 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.026 0.974 11 C -0.143 4.143 12 C -0.143 4.143 13 C -0.056 4.056 14 N -0.265 5.265 15 C 0.071 3.929 16 N -0.162 5.162 17 N -0.009 5.009 18 C -0.129 4.129 19 C 0.002 3.998 20 Cl 0.045 6.955 21 C -0.179 4.179 22 Cl 0.035 6.965 23 C 0.284 3.716 24 O -0.419 6.419 25 C -0.047 4.047 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.029 0.971 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.265 0.735 36 H 0.034 0.966 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.326 -23.463 0.906 23.518 hybrid contribution 1.042 0.581 1.856 2.207 sum -0.284 -22.882 2.762 23.050 Atomic orbital electron populations 1.70017 1.07086 1.27109 1.51055 1.25681 0.95654 1.02217 0.94747 0.85633 0.78645 0.79540 0.78283 1.19926 1.21050 1.19574 1.21485 0.93074 0.91964 1.50963 0.92871 1.18550 0.92816 0.90909 0.93892 0.97351 1.21484 0.99254 0.95960 0.97567 1.21537 0.97102 0.94459 1.01199 1.21900 0.95249 0.98877 0.89595 1.62554 1.23817 1.01948 1.38224 1.22901 0.92103 0.76938 1.00932 1.46900 1.28140 1.25025 1.16102 1.71185 0.98409 1.06766 1.24563 1.24358 1.02748 0.92652 0.93118 1.22607 0.91923 0.91071 0.94243 1.98465 1.77863 1.33892 1.85235 1.22167 1.02146 0.99060 0.94529 1.98406 1.89234 1.85402 1.23501 1.17678 0.85476 0.86142 0.82284 1.91061 1.31020 1.58854 1.60991 1.22114 0.95637 0.87376 0.99550 0.93020 0.96451 0.91819 0.91655 0.91995 0.91494 0.97103 0.90271 0.84261 0.73467 0.96568 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.46 11.36 21.45 0.24 -52.21 16 2 C 0.02 0.89 5.30 84.66 0.45 1.34 16 3 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.54 -29.39 8.56 25.60 0.22 -29.17 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.06 2.86 2.26 -11.49 -0.03 2.83 16 10 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 11 C -0.10 -5.05 5.03 30.67 0.15 -4.90 16 12 C -0.11 -4.13 6.09 30.64 0.19 -3.94 16 13 C 0.07 2.58 4.55 86.33 0.39 2.97 16 14 N -0.54 -18.95 4.91 -908.74 -4.46 -23.41 16 15 C 0.28 7.96 6.21 170.81 1.06 9.02 16 16 N -0.34 -8.84 1.92 -481.96 -0.93 -9.77 16 17 N -0.19 -3.87 10.18 -56.78 -0.58 -4.45 16 18 C 0.06 0.84 11.15 85.49 0.95 1.79 16 19 C 0.04 0.58 6.37 22.53 0.14 0.73 16 20 Cl 0.02 0.19 28.16 -2.72 -0.08 0.11 16 21 C -0.14 -3.16 6.40 22.66 0.15 -3.02 16 22 Cl 0.01 0.12 27.80 -2.72 -0.08 0.05 16 23 C 0.49 13.94 6.73 84.97 0.57 14.51 16 24 O -0.54 -19.39 16.02 -5.60 -0.09 -19.48 16 25 C 0.08 3.32 4.52 86.32 0.39 3.71 16 26 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 3.45 6.16 -2.38 -0.01 3.44 16 29 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.13 6.16 -2.39 -0.01 2.12 16 32 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.08 2.43 6.69 -2.39 -0.02 2.42 16 34 H 0.14 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.25 0.98 8.06 -2.91 -0.02 0.95 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 3.03 8.12 -2.39 -0.02 3.01 16 Total: -1.00 -65.93 332.62 1.81 -64.12 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.10 Total: 3.56 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 4.64 Total: -4.12 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -5.72 Total: -89.84 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.09 Total: -19.48 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.15 Total: 0.16 kcal Total: -65.93 1.81 -64.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.345 kcal (2) G-P(sol) polarization free energy of solvation -65.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds