Wall clock time and date at job start Tue Mar 31 2020 17:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34750 * 117.00249 * 2 1 4 4 O 1.21524 * 120.00064 * 0.02562 * 3 2 1 5 5 C 1.47289 * 120.00221 * 179.97438 * 3 2 1 6 6 C 1.41343 * 126.42670 * 359.97438 * 5 3 2 7 7 N 1.30431 * 108.01316 * 179.77418 * 6 5 3 8 8 N 1.39927 * 108.92086 * 0.38334 * 7 6 5 9 9 C 1.46496 * 125.74678 * 179.87324 * 8 7 6 10 10 C 1.50706 * 109.47106 * 304.68907 * 9 8 7 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 S 1.65598 * 119.99746 * 180.02562 * 12 10 9 14 14 O 1.42102 * 104.27619 * 181.07419 * 13 12 10 15 15 O 1.42099 * 104.27843 * 308.92577 * 13 12 10 16 16 C 1.81398 * 104.45183 * 64.99951 * 13 12 10 17 17 C 1.50701 * 109.46986 * 179.97438 * 16 13 12 18 18 H 1.08002 * 120.00405 * 359.97438 * 17 16 13 19 19 C 1.37882 * 119.99620 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00433 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99593 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47359 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46800 * 120.00427 * 21 19 17 24 24 H 1.48495 * 109.47058 * 240.00041 * 21 19 17 25 25 C 1.34232 * 108.50832 * 359.60715 * 8 7 6 26 26 H 1.08989 * 109.47172 * 300.00231 * 1 2 3 27 27 H 1.08997 * 109.46843 * 60.00250 * 1 2 3 28 28 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.07998 * 125.99449 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.47001 * 184.69198 * 9 8 7 31 31 H 1.09000 * 109.47574 * 64.69414 * 9 8 7 32 32 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 33 33 H 1.09002 * 109.47179 * 300.00163 * 16 13 12 34 34 H 1.08997 * 109.47217 * 59.99828 * 16 13 12 35 35 H 0.96989 * 120.00413 * 179.97438 * 20 19 17 36 36 H 1.08003 * 126.29077 * 180.22839 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5346 1.2777 0.0006 6 6 4.4323 0.1859 0.0017 7 7 5.6466 0.6621 -0.0030 8 7 5.5857 2.0600 0.0016 9 6 6.7364 2.9667 0.0012 10 6 7.6348 2.6388 1.1659 11 8 7.3428 1.7362 1.9215 12 7 8.7631 3.3478 1.3671 13 16 9.7506 2.9870 2.6466 14 8 10.8035 3.9369 2.5554 15 8 8.8779 2.9663 3.7678 16 6 10.3654 1.3186 2.2875 17 6 11.2870 0.8740 3.3939 18 1 11.4835 1.5297 4.2293 19 6 11.8793 -0.3700 3.3396 20 7 11.6404 -1.1682 2.3221 21 14 13.0221 -0.9208 4.7107 22 1 13.1246 0.1531 5.7312 23 1 12.4816 -2.1521 5.3409 24 1 14.3682 -1.2017 4.1502 25 6 4.2955 2.4304 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.1604 -0.8593 0.0026 30 1 6.3881 3.9958 0.0895 31 1 7.2910 2.8496 -0.9298 32 1 8.9967 4.0694 0.7625 33 1 9.5243 0.6291 2.2155 34 1 10.9098 1.3274 1.3433 35 1 12.0573 -2.0431 2.2838 36 1 3.9213 3.4435 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860751752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:36 Heat of formation + Delta-G solvation = -108.431820 kcal Electronic energy + Delta-G solvation = -25533.247515 eV Core-core repulsion = 21340.492544 eV Total energy + Delta-G solvation = -4192.754971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73084 -40.20021 -39.66828 -36.48749 -36.35888 -35.28942 -34.38242 -33.75823 -33.38789 -30.77266 -29.12276 -28.86447 -27.44967 -23.66424 -23.45371 -22.55874 -20.93935 -20.54879 -19.43811 -18.35938 -17.84426 -17.34693 -17.06492 -16.52522 -16.51132 -16.34988 -15.71813 -15.45802 -15.00369 -14.72134 -14.62807 -14.24250 -13.93262 -13.82042 -13.36926 -13.17867 -12.77757 -12.58592 -12.33506 -12.25048 -12.03856 -11.50402 -11.39505 -11.31656 -11.30162 -10.97197 -10.96150 -10.75327 -10.61587 -10.49507 -10.42562 -9.86256 -9.71898 -9.25240 -9.02664 -8.74177 -6.35708 -4.47538 0.84660 1.12584 1.83263 1.99052 2.09070 2.67828 2.98027 3.05844 3.19139 3.26356 3.32641 3.90953 4.18544 4.22200 4.38179 4.48588 4.60848 4.69779 4.77814 4.89904 4.92000 4.97197 5.05053 5.09709 5.16991 5.25654 5.47616 6.16402 6.25774 6.33808 6.50798 6.68472 6.83092 7.33243 7.37710 7.49628 7.67205 7.70672 8.53672 9.20295 10.75912 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.002818 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.962807 B = 9935.195010 C =10967.011723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.354 6.354 3 C 0.549 3.451 4 O -0.525 6.525 5 C -0.284 4.284 6 C 0.100 3.900 7 N -0.260 5.260 8 N -0.349 5.349 9 C 0.110 3.890 10 C 0.517 3.483 11 O -0.454 6.454 12 N -1.058 6.058 13 S 2.552 3.448 14 O -0.966 6.966 15 O -0.951 6.951 16 C -0.401 4.401 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.078 3.922 20 N -0.875 5.875 21 Si 0.907 3.093 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.142 3.858 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.199 0.801 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.426 0.574 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.269 0.731 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.426 6.228 -10.944 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.270 6.270 3 C 0.395 3.605 4 O -0.415 6.415 5 C -0.297 4.297 6 C -0.090 4.090 7 N -0.077 5.077 8 N -0.127 5.127 9 C -0.017 4.017 10 C 0.299 3.701 11 O -0.321 6.321 12 N -0.818 5.818 13 S 2.654 3.346 14 O -0.956 6.956 15 O -0.941 6.941 16 C -0.538 4.538 17 C -0.576 4.576 18 H 0.089 0.911 19 C -0.129 4.129 20 N -0.510 5.510 21 Si 0.733 3.267 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.203 1.203 25 C -0.010 4.010 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.216 0.784 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.260 0.740 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.343 6.092 -9.733 19.164 hybrid contribution -0.335 -0.114 -0.133 0.378 sum -15.678 5.978 -9.866 19.465 Atomic orbital electron populations 1.23245 0.76110 1.03647 1.02491 1.86545 1.23324 1.32591 1.84581 1.19951 0.87441 0.81237 0.71888 1.90827 1.66783 1.36018 1.47880 1.19214 0.90652 0.93563 1.26314 1.24287 0.88636 1.00268 0.95774 1.77542 1.21641 0.86306 1.22234 1.48016 1.04482 1.05855 1.54337 1.21816 0.86246 0.93473 1.00160 1.20251 0.81455 0.81952 0.86391 1.91025 1.70542 1.26685 1.43844 1.55549 1.34356 1.43461 1.48442 1.07269 0.73538 0.80393 0.73357 1.93529 1.55202 1.61618 1.85279 1.93538 1.64621 1.88173 1.47789 1.27583 1.07645 1.11655 1.06879 1.20309 1.28637 1.03097 1.05543 0.91083 1.24923 0.96048 0.95633 0.96302 1.69958 1.42232 1.09207 1.29638 0.86278 0.79933 0.79115 0.81382 1.18979 1.20239 1.20288 1.22927 0.83304 1.00078 0.94661 0.91900 0.91977 0.88054 0.78425 0.84408 0.84955 0.74030 0.88274 0.89647 0.92129 0.79008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.72 10.41 -40.63 -0.42 -4.14 16 3 C 0.55 6.61 7.95 34.41 0.27 6.88 16 4 O -0.52 -7.24 16.69 -19.28 -0.32 -7.56 16 5 C -0.28 -3.34 6.13 -105.08 -0.64 -3.98 16 6 C 0.10 1.23 11.87 -16.97 -0.20 1.03 16 7 N -0.26 -3.80 11.56 30.87 0.36 -3.44 16 8 N -0.35 -4.05 3.37 -61.97 -0.21 -4.26 16 9 C 0.11 0.92 6.97 -5.19 -0.04 0.89 16 10 C 0.52 7.42 7.60 -10.98 -0.08 7.34 16 11 O -0.45 -9.06 13.81 -11.57 -0.16 -9.22 16 12 N -1.06 -14.44 5.60 31.22 0.17 -14.27 16 13 S 2.55 52.16 5.03 -107.50 -0.54 51.62 16 14 O -0.97 -20.86 18.08 -57.54 -1.04 -21.90 16 15 O -0.95 -22.82 17.04 -64.79 -1.10 -23.93 16 16 C -0.40 -9.70 5.64 36.01 0.20 -9.50 16 17 C -0.54 -14.84 9.13 -34.44 -0.31 -15.15 16 18 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 19 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 20 N -0.87 -24.90 13.29 55.43 0.74 -24.16 16 21 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.14 1.44 11.25 -16.55 -0.19 1.25 16 26 H 0.06 0.46 8.14 -51.94 -0.42 0.03 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.20 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.14 0.48 8.06 -51.93 -0.42 0.06 16 31 H 0.13 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.43 3.56 8.79 -34.47 -0.30 3.26 16 33 H 0.10 2.56 7.19 -51.92 -0.37 2.18 16 34 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 35 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.19 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -41.28 345.16 -5.96 -47.24 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.59 Total: 0.60 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.02 Total: -7.84 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 1.06 Total: -46.13 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -3.05 Total: -66.74 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 52.16 SS G_CDS: -0.54 Total: 51.62 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -41.28 -5.96 -47.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860751752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.192 kcal (2) G-P(sol) polarization free energy of solvation -41.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds