Wall clock time and date at job start Tue Mar 31 2020 17:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34750 * 117.00249 * 2 1 4 4 O 1.21524 * 120.00064 * 0.02562 * 3 2 1 5 5 C 1.47289 * 120.00221 * 179.97438 * 3 2 1 6 6 C 1.41343 * 126.42670 * 359.97438 * 5 3 2 7 7 N 1.30431 * 108.01316 * 179.77418 * 6 5 3 8 8 N 1.39927 * 108.92086 * 0.38334 * 7 6 5 9 9 C 1.46496 * 125.74678 * 179.87324 * 8 7 6 10 10 C 1.50706 * 109.47106 * 304.68907 * 9 8 7 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 179.97438 * 10 9 8 13 13 S 1.65598 * 119.99746 * 180.02562 * 12 10 9 14 14 O 1.42102 * 104.27619 * 181.07419 * 13 12 10 15 15 O 1.42099 * 104.27843 * 308.92577 * 13 12 10 16 16 C 1.81398 * 104.45183 * 64.99951 * 13 12 10 17 17 C 1.50701 * 109.46986 * 179.97438 * 16 13 12 18 18 H 1.08002 * 120.00405 * 359.97438 * 17 16 13 19 19 C 1.37882 * 119.99620 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00433 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99593 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47359 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46800 * 120.00427 * 21 19 17 24 24 H 1.48495 * 109.47058 * 240.00041 * 21 19 17 25 25 C 1.34232 * 108.50832 * 359.60715 * 8 7 6 26 26 H 1.08989 * 109.47172 * 300.00231 * 1 2 3 27 27 H 1.08997 * 109.46843 * 60.00250 * 1 2 3 28 28 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.07998 * 125.99449 * 359.97438 * 6 5 3 30 30 H 1.09001 * 109.47001 * 184.69198 * 9 8 7 31 31 H 1.09000 * 109.47574 * 64.69414 * 9 8 7 32 32 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 33 33 H 1.09002 * 109.47179 * 300.00163 * 16 13 12 34 34 H 1.08997 * 109.47217 * 59.99828 * 16 13 12 35 35 H 0.96989 * 120.00413 * 179.97438 * 20 19 17 36 36 H 1.08003 * 126.29077 * 180.22839 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5346 1.2777 0.0006 6 6 4.4323 0.1859 0.0017 7 7 5.6466 0.6621 -0.0030 8 7 5.5857 2.0600 0.0016 9 6 6.7364 2.9667 0.0012 10 6 7.6348 2.6388 1.1659 11 8 7.3428 1.7362 1.9215 12 7 8.7631 3.3478 1.3671 13 16 9.7506 2.9870 2.6466 14 8 10.8035 3.9369 2.5554 15 8 8.8779 2.9663 3.7678 16 6 10.3654 1.3186 2.2875 17 6 11.2870 0.8740 3.3939 18 1 11.4835 1.5297 4.2293 19 6 11.8793 -0.3700 3.3396 20 7 11.6404 -1.1682 2.3221 21 14 13.0221 -0.9208 4.7107 22 1 13.1246 0.1531 5.7312 23 1 12.4816 -2.1521 5.3409 24 1 14.3682 -1.2017 4.1502 25 6 4.2955 2.4304 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.1604 -0.8593 0.0026 30 1 6.3881 3.9958 0.0895 31 1 7.2910 2.8496 -0.9298 32 1 8.9967 4.0694 0.7625 33 1 9.5243 0.6291 2.2155 34 1 10.9098 1.3274 1.3433 35 1 12.0573 -2.0431 2.2838 36 1 3.9213 3.4435 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860751752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:35 Heat of formation + Delta-G solvation = -142.653767 kcal Electronic energy + Delta-G solvation = -25534.731490 eV Core-core repulsion = 21340.492544 eV Total energy + Delta-G solvation = -4194.238946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.076 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.59570 -41.20170 -40.72688 -38.12192 -37.34366 -37.07718 -35.70626 -35.43183 -34.61845 -31.63278 -31.11615 -29.66889 -28.15157 -25.64714 -24.35691 -23.62795 -21.90311 -21.38244 -20.87511 -19.52820 -19.08471 -18.77244 -18.30929 -17.89412 -17.61287 -17.31218 -17.00286 -16.72644 -16.29896 -16.18982 -16.03379 -15.56791 -14.87981 -14.59972 -14.52782 -14.17917 -14.11375 -13.95797 -13.69578 -13.51251 -13.45085 -13.22108 -13.11652 -12.97634 -12.77967 -12.58804 -12.18964 -12.08920 -11.84068 -11.72400 -11.63452 -11.36119 -11.10623 -10.81782 -10.65806 -9.89594 -8.44468 -6.63651 -0.78518 0.28562 0.95324 1.00972 1.15649 1.35310 1.36659 1.50646 1.64109 1.93318 2.18387 2.27812 2.72345 2.89571 2.93883 3.36062 3.54463 3.70385 3.92462 4.01147 4.02234 4.12890 4.37517 4.40378 4.40971 4.61452 4.64633 4.74501 4.79912 5.27115 5.32449 5.41969 5.55961 5.67743 5.79084 6.40825 6.46907 6.48303 6.81496 7.08419 8.68516 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.002818 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.962807 B = 9935.195010 C =10967.011723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.551 3.449 4 O -0.548 6.548 5 C -0.307 4.307 6 C 0.098 3.902 7 N -0.314 5.314 8 N -0.355 5.355 9 C 0.113 3.887 10 C 0.512 3.488 11 O -0.515 6.515 12 N -1.035 6.035 13 S 2.605 3.395 14 O -0.975 6.975 15 O -0.986 6.986 16 C -0.422 4.422 17 C -0.568 4.568 18 H 0.068 0.932 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.967 3.033 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.262 1.262 25 C 0.159 3.841 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.130 0.870 29 H 0.210 0.790 30 H 0.202 0.798 31 H 0.172 0.828 32 H 0.453 0.547 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.274 0.726 36 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.946 7.959 -11.873 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.398 3.602 4 O -0.440 6.440 5 C -0.320 4.320 6 C -0.091 4.091 7 N -0.132 5.132 8 N -0.132 5.132 9 C -0.012 4.012 10 C 0.297 3.703 11 O -0.386 6.386 12 N -0.803 5.803 13 S 2.704 3.296 14 O -0.966 6.966 15 O -0.977 6.977 16 C -0.557 4.557 17 C -0.606 4.606 18 H 0.086 0.914 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.789 3.211 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.187 1.187 25 C 0.008 3.992 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.227 0.773 30 H 0.218 0.782 31 H 0.189 0.811 32 H 0.294 0.706 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -15.827 7.823 -10.694 20.641 hybrid contribution -0.280 -0.611 0.074 0.676 sum -16.107 7.212 -10.620 20.597 Atomic orbital electron populations 1.23541 0.74383 1.05643 1.02598 1.86538 1.25097 1.31957 1.84167 1.20021 0.87570 0.81306 0.71299 1.90805 1.67243 1.36651 1.49283 1.19423 0.90676 0.94197 1.27735 1.24565 0.88429 1.01254 0.94846 1.77464 1.22879 0.88580 1.24243 1.48225 1.05732 1.05158 1.54121 1.22342 0.84979 0.95641 0.98202 1.21447 0.81312 0.80415 0.87089 1.91018 1.71800 1.29367 1.46414 1.54831 1.33456 1.44288 1.47702 1.05279 0.73068 0.77816 0.73405 1.93510 1.56555 1.60583 1.85927 1.93494 1.65583 1.87983 1.50602 1.27664 1.06537 1.15381 1.06098 1.20757 1.29585 1.03767 1.06533 0.91436 1.25875 0.97581 0.95762 0.98703 1.70042 1.43310 1.09693 1.31336 0.85375 0.78436 0.78780 0.78552 1.18472 1.19580 1.18682 1.23557 0.82441 1.01260 0.91957 0.92095 0.91584 0.85197 0.77331 0.78160 0.81072 0.70620 0.90761 0.89537 0.91690 0.75060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.57 113.37 1.20 1.62 16 2 O -0.36 -7.37 10.41 -56.61 -0.59 -7.96 16 3 C 0.55 12.84 7.95 70.20 0.56 13.40 16 4 O -0.55 -14.50 16.69 19.76 0.33 -14.17 16 5 C -0.31 -6.91 6.13 -20.16 -0.12 -7.03 16 6 C 0.10 2.43 11.87 85.66 1.02 3.44 16 7 N -0.31 -9.10 11.56 -56.25 -0.65 -9.75 16 8 N -0.35 -7.38 3.37 -349.98 -1.18 -8.55 16 9 C 0.11 1.44 6.97 85.64 0.60 2.04 16 10 C 0.51 13.74 7.60 87.66 0.67 14.41 16 11 O -0.51 -20.76 13.81 13.35 0.18 -20.58 16 12 N -1.03 -26.07 5.60 -173.53 -0.97 -27.05 16 13 S 2.60 105.76 5.03 -56.49 -0.28 105.47 16 14 O -0.98 -41.01 18.08 -127.65 -2.31 -43.32 16 15 O -0.99 -47.64 17.04 -120.72 -2.06 -49.70 16 16 C -0.42 -21.12 5.64 71.24 0.40 -20.72 16 17 C -0.57 -32.25 9.13 25.60 0.23 -32.02 16 18 H 0.07 3.75 7.71 -2.91 -0.02 3.72 16 19 C 0.02 1.36 5.46 84.66 0.46 1.83 16 20 N -0.91 -52.93 13.29 21.45 0.28 -52.64 16 21 Si 0.97 43.42 29.54 68.60 2.03 45.44 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 C 0.16 2.79 11.25 84.30 0.95 3.74 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.13 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.21 4.19 8.06 -2.91 -0.02 4.16 16 30 H 0.20 0.05 8.06 -2.39 -0.02 0.03 16 31 H 0.17 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.45 5.90 8.79 -96.75 -0.85 5.05 16 33 H 0.07 4.05 7.19 -2.39 -0.02 4.03 16 34 H 0.09 4.16 8.14 -2.39 -0.02 4.14 16 35 H 0.27 14.78 8.31 -92.72 -0.77 14.01 16 36 H 0.23 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -94.69 345.16 1.04 -93.65 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.30 Total: 8.45 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 5.96 Total: -19.30 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -2.52 Total: -97.99 kcal Atomic # 8 Polarization: -131.29 SS G_CDS: -4.44 Total: -135.73 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 105.76 SS G_CDS: -0.28 Total: 105.47 kcal Total: -94.69 1.04 -93.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860751752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.003 kcal (2) G-P(sol) polarization free energy of solvation -94.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds