Wall clock time and date at job start Tue Mar 31 2020 15:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 116.99944 * 2 1 4 4 O 1.20829 * 120.00297 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99965 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47109 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47425 * 180.02562 * 6 5 3 8 8 C 1.37099 * 119.99488 * 270.00227 * 7 6 5 9 9 H 1.07999 * 120.00146 * 140.02942 * 8 7 6 10 10 C 1.38951 * 120.00098 * 320.02262 * 8 7 6 11 11 N 1.31412 * 120.00100 * 163.78178 * 10 8 7 12 12 Si 1.86803 * 120.00022 * 343.79014 * 10 8 7 13 13 H 1.48502 * 109.46786 * 95.35600 * 12 10 8 14 14 H 1.48492 * 109.47143 * 215.35292 * 12 10 8 15 15 H 1.48499 * 109.46955 * 335.35702 * 12 10 8 16 16 C 1.34769 * 120.00550 * 89.99407 * 7 6 5 17 17 O 1.21302 * 119.99749 * 5.47445 * 16 7 6 18 18 C 1.50692 * 120.00402 * 185.47547 * 16 7 6 19 19 C 1.50700 * 109.47480 * 174.94003 * 18 16 7 20 20 C 1.33347 * 125.18840 * 90.00045 * 19 18 16 21 21 C 1.38472 * 114.93005 * 180.02562 * 20 19 18 22 22 C 1.33503 * 114.88783 * 0.02562 * 21 20 19 23 23 Cl 1.73590 * 125.21283 * 179.97438 * 22 21 20 24 24 S 1.75884 * 109.57918 * 359.97438 * 22 21 20 25 25 H 1.09003 * 109.47459 * 59.99765 * 1 2 3 26 26 H 1.09003 * 109.46977 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47416 * 299.99683 * 1 2 3 28 28 H 1.09000 * 109.47318 * 60.00005 * 5 3 2 29 29 H 1.08999 * 109.47300 * 299.99946 * 5 3 2 30 30 H 1.09000 * 109.47206 * 59.99716 * 6 5 3 31 31 H 1.09004 * 109.47261 * 300.00144 * 6 5 3 32 32 H 0.97001 * 119.99833 * 179.97438 * 11 10 8 33 33 H 1.09008 * 109.47221 * 54.94046 * 18 16 7 34 34 H 1.08997 * 109.47154 * 294.94093 * 18 16 7 35 35 H 1.08007 * 122.53622 * 0.02562 * 20 19 18 36 36 H 1.08009 * 122.55648 * 179.72440 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1485 2.8538 1.1858 9 1 7.0696 2.3003 1.2939 10 6 5.6583 3.6013 2.2496 11 7 6.1161 3.3950 3.4639 12 14 4.3481 4.8995 1.9535 13 1 3.0070 4.3179 2.2152 14 1 4.5755 6.0492 2.8653 15 1 4.4202 5.3632 0.5446 16 6 6.1351 2.8549 -1.1686 17 8 5.5275 2.9241 -2.2162 18 6 7.6413 2.8092 -1.1729 19 6 8.1378 2.7375 -2.5939 20 6 8.4239 3.7893 -3.3620 21 6 8.8648 3.4781 -4.6373 22 6 8.9359 2.1719 -4.9040 23 17 9.4515 1.4850 -6.4125 24 16 8.4274 1.2536 -3.4927 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.9557 0.7809 -0.8908 29 1 3.9564 0.7806 0.8891 30 1 3.6107 3.2356 0.8906 31 1 3.6099 3.2368 -0.8893 32 1 5.7741 3.9171 4.2064 33 1 7.9798 1.9298 -0.6249 34 1 8.0334 3.7075 -0.6960 35 1 8.3195 4.8070 -3.0157 36 1 9.1263 4.2345 -5.3625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:35 Heat of formation + Delta-G solvation = -98.755740 kcal Electronic energy + Delta-G solvation = -23417.483878 eV Core-core repulsion = 19633.564907 eV Total energy + Delta-G solvation = -3783.918971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68572 -40.77701 -38.90232 -37.79377 -37.54325 -36.90371 -34.25439 -33.36384 -32.18836 -28.92973 -27.95804 -26.81084 -25.57659 -24.07748 -21.98310 -21.10253 -20.35837 -19.28924 -18.63007 -18.27538 -18.06279 -17.80402 -17.54502 -16.84201 -16.57636 -16.07220 -15.66199 -15.34371 -14.75182 -14.59809 -14.52407 -14.45442 -14.08388 -14.07028 -13.78352 -13.68044 -13.46977 -13.07082 -12.94709 -12.74891 -12.57396 -12.37558 -12.11082 -11.97549 -11.88630 -11.77608 -11.66901 -11.64763 -11.18413 -10.60014 -9.83016 -9.47920 -9.43137 -8.52100 -6.19419 -0.14564 0.16362 0.88609 1.03982 1.18512 1.26854 1.31039 1.38949 1.53693 1.70408 1.87191 2.14635 2.64485 2.94477 3.67997 3.79601 3.82048 4.03780 4.20763 4.27537 4.28633 4.32593 4.41023 4.41228 4.61757 4.65044 4.66195 4.78877 4.86293 4.99776 5.21848 5.24562 5.38195 5.43928 6.07215 6.20000 6.60056 6.92677 7.35124 7.70694 8.60568 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.003692 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.551085 B = 7582.257994 C = 9216.208401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.472 3.528 4 O -0.541 6.541 5 C -0.116 4.116 6 C 0.113 3.887 7 N -0.475 5.475 8 C -0.337 4.337 9 H 0.106 0.894 10 C 0.045 3.955 11 N -0.889 5.889 12 Si 0.910 3.090 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.488 3.512 17 O -0.602 6.602 18 C -0.049 4.049 19 C -0.149 4.149 20 C -0.134 4.134 21 C -0.110 4.110 22 C -0.165 4.165 23 Cl -0.013 7.013 24 S 0.146 5.854 25 H 0.062 0.938 26 H 0.138 0.862 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.279 0.721 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.156 0.844 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 -5.457 -10.441 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.317 3.683 4 O -0.431 6.431 5 C -0.154 4.154 6 C -0.010 4.010 7 N -0.197 5.197 8 C -0.464 4.464 9 H 0.123 0.877 10 C -0.161 4.161 11 N -0.526 5.526 12 Si 0.738 3.262 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.196 1.196 16 C 0.278 3.722 17 O -0.486 6.486 18 C -0.090 4.090 19 C -0.267 4.267 20 C -0.164 4.164 21 C -0.143 4.143 22 C -0.309 4.309 23 Cl 0.016 6.984 24 S 0.409 5.591 25 H 0.081 0.919 26 H 0.156 0.844 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.173 0.827 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.902 -6.707 -10.565 12.547 hybrid contribution -0.879 2.297 -0.056 2.460 sum 0.023 -4.410 -10.621 11.500 Atomic orbital electron populations 1.23609 0.74603 1.05987 1.02531 1.86508 1.25261 1.32138 1.83634 1.23827 0.92135 0.81391 0.70972 1.90640 1.67950 1.37483 1.47068 1.21643 0.86936 0.99532 1.07330 1.21300 0.83090 0.95162 1.01459 1.43761 1.03815 1.66154 1.05944 1.19075 1.09563 1.29905 0.87880 0.87659 1.25633 0.98204 0.97326 0.94888 1.69724 1.43910 1.39617 0.99348 0.86408 0.80277 0.80931 0.78552 1.20330 1.21071 1.19592 1.20830 0.90554 0.78045 0.82791 1.90590 1.70983 1.54638 1.32424 1.19964 0.91340 1.06790 0.90945 1.24205 1.06260 0.96164 1.00103 1.20156 1.02520 1.00504 0.93204 1.20336 1.01445 0.94729 0.97766 1.25243 1.14264 0.97198 0.94162 1.98340 1.89008 1.84110 1.26957 1.84201 1.64014 1.08177 1.02677 0.91898 0.84393 0.92112 0.86372 0.85855 0.92395 0.91415 0.91034 0.87165 0.85894 0.82674 0.81403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -10.44 10.56 -51.37 -0.54 -10.98 16 3 C 0.47 16.68 7.96 71.24 0.57 17.24 16 4 O -0.54 -22.13 15.73 21.95 0.35 -21.79 16 5 C -0.12 -4.15 6.14 29.85 0.18 -3.97 16 6 C 0.11 4.89 3.45 86.38 0.30 5.19 16 7 N -0.48 -20.80 2.16 -635.53 -1.37 -22.17 16 8 C -0.34 -15.71 9.13 84.04 0.77 -14.94 16 9 H 0.11 4.97 7.18 -2.91 -0.02 4.94 16 10 C 0.04 2.22 5.39 84.93 0.46 2.68 16 11 N -0.89 -46.15 13.96 21.66 0.30 -45.85 16 12 Si 0.91 41.88 24.75 68.60 1.70 43.57 16 13 H -0.28 -12.90 6.77 99.48 0.67 -12.22 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.27 -12.82 7.05 99.48 0.70 -12.12 16 16 C 0.49 20.22 7.61 87.66 0.67 20.89 16 17 O -0.60 -27.53 15.60 -3.10 -0.05 -27.58 16 18 C -0.05 -1.65 4.91 29.10 0.14 -1.51 16 19 C -0.15 -4.60 5.01 24.58 0.12 -4.48 16 20 C -0.13 -3.76 10.05 21.22 0.21 -3.55 16 21 C -0.11 -2.75 10.13 21.25 0.22 -2.53 16 22 C -0.17 -4.28 7.10 66.75 0.47 -3.81 16 23 Cl -0.01 -0.28 29.29 -2.72 -0.08 -0.36 16 24 S 0.15 4.11 23.33 -56.49 -1.32 2.79 16 25 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 26 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 29 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 30 H 0.06 2.68 3.08 -2.39 -0.01 2.67 16 31 H 0.07 3.08 7.31 -2.38 -0.02 3.07 16 32 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.11 3.45 7.59 -2.38 -0.02 3.44 16 34 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 35 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -60.54 342.14 5.37 -55.17 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.08 Total: 14.25 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.31 Total: 12.95 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -1.07 Total: -68.02 kcal Atomic # 8 Polarization: -60.10 SS G_CDS: -0.25 Total: -60.35 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.70 Total: 43.57 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.32 Total: 2.79 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -60.54 5.37 -55.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.587 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds