Wall clock time and date at job start Tue Mar 31 2020 16:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47011 * 240.00141 * 3 2 1 5 5 H 1.48495 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47495 * 119.99928 * 3 2 1 7 7 C 1.37881 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99927 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47585 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47696 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00298 * 179.97438 * 12 11 10 14 14 O 1.21355 * 120.00200 * 0.02562 * 13 12 11 15 15 C 1.49457 * 120.00175 * 179.97438 * 13 12 11 16 16 O 1.21347 * 120.00028 * 0.02562 * 15 13 12 17 17 N 1.34772 * 120.00159 * 180.02562 * 15 13 12 18 18 C 1.46495 * 120.00283 * 180.02562 * 17 15 13 19 19 C 1.50696 * 109.47485 * 179.97438 * 18 17 15 20 20 N 1.28985 * 124.90273 * 89.99897 * 19 18 17 21 21 C 1.31834 * 117.13612 * 179.97438 * 20 19 18 22 22 C 1.33751 * 114.45808 * 0.02562 * 21 20 19 23 23 Cl 1.73608 * 126.03986 * 179.97438 * 22 21 20 24 24 S 1.70978 * 124.90068 * 269.95867 * 19 18 17 25 25 H 0.97001 * 119.99515 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47059 * 59.99649 * 9 7 2 27 27 H 1.09010 * 109.47123 * 300.00046 * 9 7 2 28 28 H 1.09002 * 109.47552 * 60.00286 * 10 9 7 29 29 H 1.08998 * 109.47399 * 300.00026 * 10 9 7 30 30 H 1.09004 * 109.46873 * 59.99612 * 11 10 9 31 31 H 1.09003 * 109.47321 * 300.00420 * 11 10 9 32 32 H 0.97001 * 119.99579 * 0.02562 * 12 11 10 33 33 H 0.97001 * 120.00138 * 359.97438 * 17 15 13 34 34 H 1.09004 * 109.47235 * 59.99543 * 18 17 15 35 35 H 1.08998 * 109.47385 * 299.99843 * 18 17 15 36 36 H 1.08001 * 122.76653 * 179.72777 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 7 2.4321 -6.1007 0.0049 13 6 1.9828 -7.3713 0.0070 14 8 0.7897 -7.5931 0.0081 15 6 2.9539 -8.5073 0.0068 16 8 4.1470 -8.2857 0.0053 17 7 2.5047 -9.7780 0.0084 18 6 3.4565 -10.8915 0.0088 19 6 2.7030 -12.1966 0.0112 20 7 2.3329 -12.8370 -1.0455 21 6 1.6804 -13.9683 -0.8652 22 6 1.4896 -14.2994 0.4166 23 17 0.6712 -15.7172 0.9944 24 16 2.2163 -13.0425 1.4150 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8718 -3.6037 0.8927 29 1 2.8718 -3.6052 -0.8873 30 1 0.8532 -5.0459 -0.8851 31 1 0.8537 -5.0438 0.8948 32 1 3.3857 -5.9234 0.0045 33 1 1.5510 -9.9552 0.0100 34 1 4.0839 -10.8330 0.8982 35 1 4.0826 -10.8348 -0.8817 36 1 1.3248 -14.5750 -1.6849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875178370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:04 Heat of formation + Delta-G solvation = -39.254520 kcal Electronic energy + Delta-G solvation = -21587.939418 eV Core-core repulsion = 17838.893364 eV Total energy + Delta-G solvation = -3749.046054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85950 -40.33159 -38.62330 -37.51239 -36.00696 -35.25622 -33.35242 -31.39003 -31.27426 -28.42101 -27.13825 -25.16989 -23.96183 -22.47101 -20.93970 -20.82521 -20.31504 -19.25890 -18.30917 -17.14688 -16.70698 -16.37823 -16.21089 -15.89109 -15.26999 -15.17170 -15.04192 -14.67014 -14.46666 -13.95299 -13.80707 -13.68541 -13.03217 -12.89732 -12.75067 -12.31555 -11.92198 -11.82470 -11.80847 -11.53313 -10.90127 -10.78075 -10.64396 -10.42995 -9.96519 -9.94735 -9.91710 -9.72985 -9.59825 -9.38549 -9.15807 -9.02974 -8.38501 -6.03463 -4.06629 -0.28039 0.13184 0.84149 1.30407 1.46151 1.85182 2.36242 3.12058 3.30286 3.32011 3.36720 3.38785 3.57309 4.15962 4.40288 4.44667 4.49983 4.75225 4.99581 5.28475 5.32454 5.56154 5.66519 5.67142 6.05511 6.21740 6.51784 6.61221 6.75713 6.88553 6.93237 7.27781 7.58143 7.60251 7.71884 7.94340 7.97675 8.35736 8.99603 9.57739 11.07705 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.039276 B = 0.001564 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.735071 B =17900.563735 C =18262.904082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.689 5.689 13 C 0.502 3.498 14 O -0.524 6.524 15 C 0.515 3.485 16 O -0.514 6.514 17 N -0.702 5.702 18 C 0.198 3.802 19 C 0.020 3.980 20 N -0.440 5.440 21 C 0.057 3.943 22 C -0.193 4.193 23 Cl 0.011 6.989 24 S 0.210 5.790 25 H 0.262 0.738 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.416 0.584 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.842 -32.929 2.366 33.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.341 5.341 13 C 0.281 3.719 14 O -0.401 6.401 15 C 0.296 3.704 16 O -0.389 6.389 17 N -0.358 5.358 18 C 0.071 3.929 19 C -0.257 4.257 20 N -0.155 5.155 21 C -0.097 4.097 22 C -0.341 4.341 23 Cl 0.039 6.961 24 S 0.463 5.537 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.248 0.752 33 H 0.253 0.747 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.867 -32.492 2.982 32.990 hybrid contribution -0.040 0.099 -0.724 0.732 sum 4.828 -32.393 2.258 32.829 Atomic orbital electron populations 1.69954 1.06056 1.26834 1.50417 1.25025 0.94867 0.99315 0.95205 0.86627 0.79549 0.83010 0.78624 1.20228 1.21280 1.20228 1.21163 0.93026 0.90893 1.51165 0.92606 1.19030 0.93799 0.90767 0.97732 1.21931 0.99893 0.92908 1.01351 1.21871 0.91720 0.84647 1.02625 1.46063 1.12311 1.04885 1.70842 1.19854 0.88319 0.84406 0.79290 1.90779 1.15900 1.84614 1.48765 1.20370 0.88920 0.83941 0.77218 1.90784 1.16116 1.84613 1.47341 1.45670 1.11468 1.04319 1.74388 1.19838 0.89731 0.77660 1.05624 1.26953 1.04609 1.02388 0.91745 1.66464 1.11460 1.06464 1.31109 1.21984 0.98650 0.93849 0.95204 1.27171 1.10602 0.98931 0.97400 1.98403 1.75897 1.33787 1.87973 1.84358 1.47887 1.12239 1.09247 0.92859 0.96175 0.96194 0.92395 0.92381 0.91010 0.90999 0.75235 0.74703 0.88161 0.87276 0.79463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 12 N -0.69 -9.82 5.55 -60.73 -0.34 -10.16 16 13 C 0.50 7.08 7.89 -11.58 -0.09 6.99 16 14 O -0.52 -8.54 16.48 5.49 0.09 -8.45 16 15 C 0.51 6.14 7.89 -11.58 -0.09 6.05 16 16 O -0.51 -6.90 16.48 5.50 0.09 -6.81 16 17 N -0.70 -6.50 5.54 -61.91 -0.34 -6.84 16 18 C 0.20 1.43 6.25 -5.20 -0.03 1.40 16 19 C 0.02 0.14 6.75 -13.48 -0.09 0.05 16 20 N -0.44 -3.67 10.54 -11.84 -0.12 -3.80 16 21 C 0.06 0.39 11.32 -19.12 -0.22 0.17 16 22 C -0.19 -1.23 7.21 29.16 0.21 -1.02 16 23 Cl 0.01 0.06 29.31 -51.86 -1.52 -1.46 16 24 S 0.21 1.22 23.18 -107.50 -2.49 -1.27 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.41 5.28 7.95 -40.82 -0.32 4.96 16 33 H 0.42 3.72 7.94 -40.82 -0.32 3.40 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -32.04 354.14 -8.60 -40.64 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -3.99 Total: 1.98 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.03 Total: 0.25 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.07 Total: -46.53 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.18 Total: -15.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.27 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.52 Total: -1.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.04 -8.60 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875178370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.385 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds