Wall clock time and date at job start Tue Mar 31 2020 16:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47309 * 266.07330 * 3 2 1 5 5 H 1.48505 * 109.46947 * 26.07551 * 3 2 1 6 6 H 1.48504 * 109.46647 * 146.06892 * 3 2 1 7 7 C 1.37879 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99990 * 353.91863 * 7 2 1 9 9 C 1.50704 * 119.99792 * 173.91456 * 7 2 1 10 10 O 1.42901 * 110.64255 * 325.51097 * 9 7 2 11 11 C 1.55156 * 110.71916 * 88.65237 * 9 7 2 12 12 C 1.54901 * 101.58361 * 154.03775 * 11 9 7 13 13 N 1.47423 * 104.83303 * 322.99217 * 12 11 9 14 14 C 1.34781 * 125.64670 * 204.08920 * 13 12 11 15 15 O 1.21592 * 119.99687 * 180.02562 * 14 13 12 16 16 N 1.34773 * 120.00140 * 0.02562 * 14 13 12 17 17 C 1.46498 * 119.99608 * 180.02562 * 16 14 13 18 18 C 1.50708 * 109.46898 * 180.02562 * 17 16 14 19 19 N 1.28986 * 124.90194 * 89.69298 * 18 17 16 20 20 C 1.31833 * 117.13032 * 179.77611 * 19 18 17 21 21 C 1.33760 * 114.45947 * 0.51222 * 20 19 18 22 22 Cl 1.73599 * 126.04073 * 179.71491 * 21 20 19 23 23 S 1.70976 * 124.89743 * 270.00047 * 18 17 16 24 24 C 1.47019 * 108.70410 * 24.35631 * 13 12 11 25 25 H 0.96998 * 119.99752 * 0.02562 * 1 2 3 26 26 H 0.96698 * 113.99548 * 297.55385 * 10 9 7 27 27 H 1.09002 * 111.00260 * 35.96553 * 11 9 7 28 28 H 1.09002 * 111.03534 * 272.13156 * 11 9 7 29 29 H 1.08995 * 110.37116 * 204.14858 * 12 11 9 30 30 H 1.08999 * 110.36643 * 81.82977 * 12 11 9 31 31 H 0.96996 * 119.99950 * 359.97438 * 16 14 13 32 32 H 1.09003 * 109.47233 * 299.99531 * 17 16 14 33 33 H 1.08998 * 109.47580 * 60.00362 * 17 16 14 34 34 H 1.08000 * 122.76971 * 180.25065 * 20 19 18 35 35 H 1.08993 * 109.88500 * 118.12915 * 24 13 12 36 36 H 1.09006 * 109.88008 * 239.29717 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5797 1.9986 -1.3968 5 1 1.4075 2.6753 0.6154 6 1 3.5027 1.4656 0.7816 7 6 2.0046 -1.1940 -0.0005 8 1 1.4692 -2.1267 0.0981 9 6 3.5053 -1.1975 -0.1389 10 8 3.9346 -0.1378 -0.9961 11 6 4.1850 -1.0885 1.2516 12 6 5.5508 -1.7686 0.9844 13 7 5.2464 -2.8765 0.0607 14 6 5.9836 -3.9940 -0.0957 15 8 5.6356 -4.8455 -0.8909 16 7 7.1063 -4.1675 0.6294 17 6 7.9078 -5.3819 0.4590 18 6 9.1003 -5.3299 1.3791 19 7 9.1192 -5.7775 2.5887 20 6 10.2494 -5.6568 3.2567 21 6 11.2356 -5.0646 2.5742 22 17 12.8378 -4.7478 3.1626 23 16 10.6210 -4.6625 0.9727 24 6 4.0089 -2.5577 -0.6664 25 1 -0.4850 0.8401 -0.0004 26 1 3.6061 -0.2078 -1.9028 27 1 3.6186 -1.6330 2.0071 28 1 4.3176 -0.0461 1.5416 29 1 5.9710 -2.1538 1.9134 30 1 6.2404 -1.0648 0.5183 31 1 7.3840 -3.4881 1.2635 32 1 7.3010 -6.2547 0.7004 33 1 8.2484 -5.4506 -0.5741 34 1 10.3677 -6.0035 4.2727 35 1 4.2136 -2.4904 -1.7348 36 1 3.2597 -3.3267 -0.4780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876367021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:06 Heat of formation + Delta-G solvation = -46.066213 kcal Electronic energy + Delta-G solvation = -23238.218703 eV Core-core repulsion = 19488.877272 eV Total energy + Delta-G solvation = -3749.341431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48660 -40.87862 -39.42932 -37.96258 -36.36554 -36.08113 -34.43625 -32.36028 -31.33285 -29.97724 -28.60681 -26.86652 -25.00826 -24.00805 -21.60233 -21.41615 -21.12430 -19.95893 -19.45940 -18.88438 -17.56910 -17.17543 -16.95829 -16.91684 -16.55603 -15.98110 -15.67399 -15.49907 -15.12328 -14.99057 -14.58222 -14.38411 -14.07895 -13.99246 -13.69552 -13.34808 -13.23168 -13.21278 -13.15730 -12.75078 -12.31556 -12.20735 -11.96943 -11.85252 -11.41364 -11.20507 -10.91116 -10.62174 -10.44378 -10.40379 -10.35739 -10.06503 -9.51328 -8.32318 -6.47273 -0.76473 -0.32650 0.37786 0.99938 1.30791 1.54158 1.55768 1.73038 1.78074 2.05594 2.46562 2.81176 2.99244 3.00209 3.51520 3.69750 3.82275 4.04028 4.07777 4.28347 4.31654 4.44937 4.50240 4.58591 4.84090 4.85381 4.95885 5.13155 5.21117 5.23480 5.42056 5.53797 5.96783 6.06609 6.41848 6.60223 6.88846 6.96408 7.30772 7.43675 8.80959 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.024650 B = 0.002471 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.648080 B =11329.147359 C =11874.387573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.024 3.976 3 Si 1.007 2.993 4 H -0.280 1.280 5 H -0.338 1.338 6 H -0.247 1.247 7 C -0.551 4.551 8 H 0.037 0.963 9 C 0.220 3.780 10 O -0.560 6.560 11 C -0.121 4.121 12 C 0.107 3.893 13 N -0.629 5.629 14 C 0.722 3.278 15 O -0.631 6.631 16 N -0.728 5.728 17 C 0.219 3.781 18 C 0.016 3.984 19 N -0.466 5.466 20 C 0.050 3.950 21 C -0.199 4.199 22 Cl 0.017 6.983 23 S 0.244 5.756 24 C 0.121 3.879 25 H 0.267 0.733 26 H 0.383 0.617 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.408 0.592 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.203 0.797 35 H 0.062 0.938 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.288 -7.013 5.384 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.176 4.176 3 Si 0.839 3.161 4 H -0.207 1.207 5 H -0.270 1.270 6 H -0.172 1.172 7 C -0.588 4.588 8 H 0.056 0.944 9 C 0.179 3.821 10 O -0.369 6.369 11 C -0.159 4.159 12 C -0.015 4.015 13 N -0.366 5.366 14 C 0.424 3.576 15 O -0.512 6.512 16 N -0.386 5.386 17 C 0.092 3.908 18 C -0.260 4.260 19 N -0.181 5.181 20 C -0.104 4.104 21 C -0.347 4.347 22 Cl 0.045 6.955 23 S 0.497 5.503 24 C -0.003 4.003 25 H 0.076 0.924 26 H 0.233 0.767 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.245 0.755 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.220 0.780 35 H 0.080 0.920 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 28.307 -7.194 4.683 29.579 hybrid contribution -0.504 0.282 0.761 0.955 sum 27.802 -6.912 5.443 29.161 Atomic orbital electron populations 1.70099 1.08743 1.28610 1.50179 1.25933 0.95344 1.03902 0.92424 0.84785 0.76966 0.75573 0.78735 1.20709 1.26997 1.17198 1.21399 0.91121 0.93612 1.52715 0.94440 1.19933 0.91302 0.82402 0.88461 1.86075 1.76174 1.49298 1.25341 1.23019 0.94603 1.01721 0.96587 1.22447 0.97796 0.88093 0.93149 1.47599 1.26206 1.18957 1.43821 1.15406 0.80107 0.81004 0.81066 1.90891 1.73407 1.44842 1.42084 1.44825 1.25065 1.23466 1.45291 1.19565 0.86404 0.88141 0.96675 1.26837 1.00508 1.03135 0.95543 1.66486 1.26700 1.18873 1.06082 1.22231 0.85589 0.99754 1.02785 1.27273 0.94905 1.12379 1.00149 1.98401 1.16395 1.94021 1.86656 1.84201 1.04155 1.52814 1.09083 1.22390 0.84179 0.98071 0.95665 0.92393 0.76741 0.90498 0.89404 0.88838 0.89801 0.75543 0.89225 0.87939 0.77995 0.92016 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.49 13.96 21.45 0.30 -56.19 16 2 C 0.02 1.30 5.46 84.65 0.46 1.76 16 3 Si 1.01 45.61 24.82 68.60 1.70 47.31 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.34 -15.98 7.11 99.48 0.71 -15.27 16 6 H -0.25 -10.26 5.20 99.48 0.52 -9.75 16 7 C -0.55 -29.21 8.82 25.60 0.23 -28.98 16 8 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 9 C 0.22 9.16 0.68 -10.35 -0.01 9.15 16 10 O -0.56 -21.71 8.74 -148.98 -1.30 -23.01 16 11 C -0.12 -4.31 5.88 31.98 0.19 -4.13 16 12 C 0.11 2.95 6.56 86.85 0.57 3.52 16 13 N -0.63 -21.04 3.33 -829.76 -2.76 -23.80 16 14 C 0.72 23.71 8.49 179.05 1.52 25.23 16 15 O -0.63 -25.61 16.67 -4.01 -0.07 -25.67 16 16 N -0.73 -16.94 5.51 -482.28 -2.66 -19.60 16 17 C 0.22 4.35 6.25 85.64 0.54 4.88 16 18 C 0.02 0.27 6.75 88.53 0.60 0.87 16 19 N -0.47 -8.72 10.54 -191.34 -2.02 -10.74 16 20 C 0.05 0.73 11.32 83.67 0.95 1.68 16 21 C -0.20 -2.61 7.21 66.80 0.48 -2.13 16 22 Cl 0.02 0.19 29.31 -2.72 -0.08 0.11 16 23 S 0.24 3.07 23.18 -56.49 -1.31 1.76 16 24 C 0.12 4.81 6.22 86.73 0.54 5.35 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.38 13.30 8.97 -74.06 -0.66 12.64 16 27 H 0.08 2.86 8.04 -2.39 -0.02 2.84 16 28 H 0.09 3.08 6.24 -2.39 -0.01 3.06 16 29 H 0.09 1.98 7.30 -2.39 -0.02 1.96 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.41 7.77 6.94 -92.71 -0.64 7.12 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 36 H 0.05 2.04 7.66 -2.38 -0.02 2.02 16 Total: -1.00 -70.08 330.90 -2.47 -72.55 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.34 Total: 20.07 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 6.06 Total: 17.20 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -7.13 Total: -110.33 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -1.37 Total: -48.68 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.70 Total: 47.31 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.31 Total: 1.76 kcal Atomic # 17 Polarization: 0.19 SS G_CDS: -0.08 Total: 0.11 kcal Total: -70.08 -2.47 -72.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876367021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.486 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds