Wall clock time and date at job start Tue Mar 31 2020 16:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00041 * 2 1 4 4 H 1.48499 * 109.47444 * 240.00365 * 3 2 1 5 5 H 1.48501 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47431 * 120.00388 * 3 2 1 7 7 C 1.37879 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99896 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.64351 * 298.31228 * 9 7 2 11 11 C 1.55159 * 110.87327 * 175.06760 * 9 7 2 12 12 C 1.55132 * 101.48684 * 205.89810 * 11 9 7 13 13 N 1.47422 * 104.72087 * 37.29365 * 12 11 9 14 14 C 1.34777 * 125.64727 * 155.82223 * 13 12 11 15 15 O 1.21593 * 119.99953 * 179.68840 * 14 13 12 16 16 N 1.34773 * 120.00097 * 359.95968 * 14 13 12 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 N 1.28990 * 124.90197 * 89.70070 * 18 17 16 20 20 C 1.31830 * 117.13027 * 179.77630 * 19 18 17 21 21 C 1.33756 * 114.46140 * 0.50692 * 20 19 18 22 22 Cl 1.73603 * 126.04021 * 179.71807 * 21 20 19 23 23 S 1.70967 * 124.90008 * 270.00082 * 18 17 16 24 24 C 1.47020 * 108.70730 * 335.54988 * 13 12 11 25 25 H 0.97000 * 120.00162 * 359.97438 * 1 2 3 26 26 H 0.96699 * 114.00148 * 61.68443 * 10 9 7 27 27 H 1.09005 * 111.00089 * 324.13684 * 11 9 7 28 28 H 1.09000 * 111.00555 * 87.98657 * 11 9 7 29 29 H 1.09001 * 110.49739 * 278.45195 * 12 11 9 30 30 H 1.09000 * 110.34355 * 156.05515 * 12 11 9 31 31 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 32 32 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 33 33 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 34 34 H 1.08005 * 122.76785 * 180.24536 * 20 19 18 35 35 H 1.08999 * 109.88065 * 120.70222 * 24 13 12 36 36 H 1.08999 * 109.89017 * 241.71947 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4504 -2.6185 1.1770 11 6 2.2255 -3.7000 -0.1258 12 6 1.3104 -4.7744 -0.7702 13 7 0.4607 -4.0256 -1.7139 14 6 -0.1466 -4.5394 -2.8018 15 8 -0.8317 -3.8264 -3.5094 16 7 0.0011 -5.8449 -3.1025 17 6 -0.6638 -6.4049 -4.2817 18 6 -0.3402 -7.8726 -4.3914 19 7 -1.0270 -8.8221 -3.8524 20 6 -0.6067 -10.0557 -4.0511 21 6 0.5034 -10.1500 -4.7914 22 17 1.3167 -11.6197 -5.2300 23 16 0.9945 -8.5191 -5.2421 24 6 0.3801 -2.6269 -1.2682 25 1 -0.4850 0.8400 0.0004 26 1 -0.2277 -1.9344 1.2627 27 1 3.0650 -3.4557 -0.7767 28 1 2.5746 -4.0238 0.8547 29 1 0.6975 -5.2592 -0.0103 30 1 1.9099 -5.5125 -1.3030 31 1 0.5477 -6.4138 -2.5381 32 1 -1.7421 -6.2770 -4.1857 33 1 -0.3148 -5.8877 -5.1755 34 1 -1.1142 -10.9186 -3.6459 35 1 0.7610 -1.9669 -2.0476 36 1 -0.6538 -2.3701 -1.0378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876367022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:09 Heat of formation + Delta-G solvation = -49.956791 kcal Electronic energy + Delta-G solvation = -23256.068494 eV Core-core repulsion = 19506.558355 eV Total energy + Delta-G solvation = -3749.510139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41471 -40.84320 -39.17267 -37.95588 -36.08300 -36.03828 -34.20949 -32.26395 -31.26768 -29.59918 -28.53853 -26.77584 -25.05169 -24.08530 -21.48703 -21.39345 -21.09296 -19.80499 -19.13225 -18.77254 -17.62974 -17.09917 -17.03633 -16.76643 -16.25155 -15.94352 -15.62244 -15.42783 -14.96854 -14.76089 -14.63746 -14.34924 -14.03890 -13.63302 -13.48937 -13.33701 -13.24300 -13.20261 -12.80776 -12.52531 -12.32163 -12.30420 -12.07655 -11.96187 -11.41518 -11.14905 -10.90905 -10.63117 -10.43861 -10.35773 -10.28522 -10.05575 -9.44162 -8.23950 -6.39720 -0.76304 -0.32569 0.38280 1.00181 1.33109 1.44920 1.45192 1.53118 1.79939 2.09030 2.39795 2.82564 3.02808 3.04806 3.69888 3.80866 4.03930 4.07574 4.18419 4.30402 4.37918 4.49883 4.59117 4.74308 4.84506 5.07311 5.14289 5.21596 5.25443 5.38157 5.50534 5.76473 5.99634 6.12636 6.42403 6.66777 6.97504 7.29674 7.37225 7.47941 8.81922 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.002364 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.995426 B =11841.079900 C =12020.413093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.557 4.557 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.110 4.110 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.717 3.283 15 O -0.636 6.636 16 N -0.727 5.727 17 C 0.219 3.781 18 C 0.016 3.984 19 N -0.465 5.465 20 C 0.051 3.949 21 C -0.198 4.198 22 Cl 0.018 6.982 23 S 0.245 5.755 24 C 0.142 3.858 25 H 0.270 0.730 26 H 0.375 0.625 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.408 0.592 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.205 0.795 35 H 0.033 0.967 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.070 -22.292 -9.845 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.595 4.595 8 H 0.086 0.914 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.147 4.147 12 C -0.015 4.015 13 N -0.370 5.370 14 C 0.419 3.581 15 O -0.518 6.518 16 N -0.386 5.386 17 C 0.092 3.908 18 C -0.260 4.260 19 N -0.181 5.181 20 C -0.103 4.103 21 C -0.346 4.346 22 Cl 0.046 6.954 23 S 0.498 5.502 24 C 0.018 3.982 25 H 0.079 0.921 26 H 0.224 0.776 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.244 0.756 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.221 0.779 35 H 0.052 0.948 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.191 -21.757 -10.649 24.583 hybrid contribution -0.616 0.548 0.506 0.968 sum 3.575 -21.209 -10.143 23.779 Atomic orbital electron populations 1.69800 1.07095 1.28494 1.50034 1.25812 0.95785 1.02791 0.93168 0.85540 0.78342 0.78477 0.78874 1.19713 1.21126 1.19351 1.21792 0.93935 0.91291 1.52451 0.91390 1.19729 0.87095 0.93521 0.80443 1.86098 1.51741 1.56261 1.45449 1.22758 0.96903 0.93622 1.01462 1.22453 0.92400 0.94853 0.91821 1.47879 1.51629 1.12009 1.25452 1.15528 0.79879 0.82177 0.80494 1.90875 1.46379 1.60782 1.53728 1.44803 1.55514 1.07536 1.30717 1.19540 0.99066 0.83275 0.88956 1.26773 0.97643 0.99651 1.01940 1.66485 1.30892 0.99507 1.21255 1.22241 0.94227 0.95219 0.98643 1.27267 1.02395 0.94674 1.10292 1.98399 1.76992 1.28664 1.91298 1.84200 1.24477 0.94357 1.47135 1.22378 0.99225 0.78865 0.97763 0.92122 0.77600 0.89543 0.89223 0.91274 0.88109 0.75562 0.89428 0.88189 0.77870 0.94843 0.95292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.78 10.96 21.45 0.24 -49.55 16 2 C 0.03 1.33 5.28 84.66 0.45 1.78 16 3 Si 0.96 41.80 29.54 68.60 2.03 43.83 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.56 -28.80 8.13 25.60 0.21 -28.59 16 8 H 0.07 3.40 7.78 -2.91 -0.02 3.38 16 9 C 0.23 11.08 0.85 -10.35 -0.01 11.07 16 10 O -0.59 -29.42 13.07 -148.98 -1.95 -31.36 16 11 C -0.11 -4.02 6.24 32.07 0.20 -3.82 16 12 C 0.11 3.36 6.58 86.93 0.57 3.93 16 13 N -0.63 -25.31 3.32 -829.31 -2.76 -28.07 16 14 C 0.72 27.75 8.49 179.06 1.52 29.27 16 15 O -0.64 -30.09 16.67 -4.01 -0.07 -30.16 16 16 N -0.73 -19.82 5.51 -482.29 -2.66 -22.48 16 17 C 0.22 5.07 6.25 85.63 0.54 5.61 16 18 C 0.02 0.31 6.75 88.53 0.60 0.90 16 19 N -0.47 -9.54 10.54 -191.36 -2.02 -11.56 16 20 C 0.05 0.80 11.32 83.67 0.95 1.75 16 21 C -0.20 -2.83 7.21 66.80 0.48 -2.35 16 22 Cl 0.02 0.22 29.31 -2.72 -0.08 0.14 16 23 S 0.25 3.50 23.18 -56.49 -1.31 2.19 16 24 C 0.14 6.98 5.23 86.73 0.45 7.43 16 25 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.37 19.69 7.45 -74.06 -0.55 19.14 16 27 H 0.09 3.01 8.05 -2.38 -0.02 2.99 16 28 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.10 2.28 7.29 -2.39 -0.02 2.27 16 31 H 0.41 9.12 6.94 -92.71 -0.64 8.48 16 32 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.03 1.82 7.81 -2.39 -0.02 1.80 16 36 H 0.03 1.60 7.92 -2.39 -0.02 1.58 16 Total: -1.00 -65.78 337.94 -2.66 -68.44 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.04 Total: 31.61 kcal Atomic # 6 Polarization: 21.01 SS G_CDS: 5.95 Total: 26.97 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -7.20 Total: -111.65 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -2.01 Total: -61.52 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.31 Total: 2.19 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.14 kcal Total: -65.78 -2.66 -68.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876367022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.483 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds