Wall clock time and date at job start Tue Mar 31 2020 16:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00130 * 2 1 4 4 H 1.48493 * 109.47393 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47198 * 120.00139 * 3 2 1 6 6 H 1.48507 * 109.47275 * 239.99994 * 3 2 1 7 7 C 1.40054 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99966 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99975 * 354.97653 * 9 7 2 11 11 N 1.34777 * 120.00043 * 174.98237 * 9 7 2 12 12 C 1.46966 * 120.59305 * 4.93605 * 11 9 7 13 13 C 1.53814 * 108.39849 * 124.75935 * 12 11 9 14 14 N 1.46966 * 108.57810 * 49.63797 * 13 12 11 15 15 S 1.65600 * 120.59473 * 124.62539 * 14 13 12 16 16 O 1.42101 * 106.40125 * 23.56160 * 15 14 13 17 17 O 1.42097 * 106.40396 * 156.48086 * 15 14 13 18 18 C 1.76195 * 107.21626 * 270.02415 * 15 14 13 19 19 C 1.35144 * 127.25127 * 89.99975 * 18 15 14 20 20 C 1.37804 * 114.75899 * 179.97438 * 19 18 15 21 21 N 1.30078 * 116.88619 * 359.97438 * 20 19 18 22 22 S 1.69606 * 107.15045 * 359.73081 * 21 20 19 23 23 C 1.46968 * 118.81084 * 304.64938 * 14 13 12 24 24 C 1.46966 * 120.59464 * 185.21833 * 11 9 7 25 25 H 0.97000 * 119.99587 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.61294 * 244.54438 * 12 11 9 27 27 H 1.09002 * 109.60786 * 5.05936 * 12 11 9 28 28 H 1.09007 * 109.74220 * 289.85406 * 13 12 11 29 29 H 1.08995 * 109.67785 * 169.38601 * 13 12 11 30 30 H 1.08004 * 122.61596 * 359.97438 * 19 18 15 31 31 H 1.08002 * 121.55646 * 180.02562 * 20 19 18 32 32 H 1.09002 * 109.60813 * 295.47678 * 23 14 13 33 33 H 1.08999 * 109.60718 * 174.97107 * 23 14 13 34 34 H 1.08998 * 109.61138 * 354.95013 * 24 11 9 35 35 H 1.08995 * 109.60532 * 115.28615 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2759 2.7464 -0.0006 5 1 3.0945 1.6963 1.2124 6 1 3.0945 1.6964 -1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0616 -2.4824 0.0924 11 7 1.9450 -3.6455 -0.1010 12 6 3.4145 -3.6655 -0.1038 13 6 3.8894 -4.6047 1.0180 14 7 3.1635 -5.8773 0.9018 15 16 3.9867 -7.3087 0.7758 16 8 5.2688 -7.0858 1.3466 17 8 3.1001 -8.3227 1.2285 18 6 4.2514 -7.6088 -0.9401 19 6 5.3077 -7.2158 -1.6859 20 6 5.2514 -7.5930 -3.0101 21 7 4.2072 -8.2724 -3.3844 22 16 3.2239 -8.4720 -2.0169 23 6 1.6940 -5.8568 0.8988 24 6 1.2191 -4.9182 -0.2172 25 1 -0.4849 0.8401 -0.0004 26 1 3.7736 -4.0299 -1.0662 27 1 3.7943 -2.6594 0.0741 28 1 3.6829 -4.1531 1.9884 29 1 4.9599 -4.7837 0.9181 30 1 6.1315 -6.6503 -1.2760 31 1 6.0380 -7.3372 -3.7046 32 1 1.3313 -5.4944 1.8607 33 1 1.3145 -6.8623 0.7173 34 1 0.1488 -4.7395 -0.1144 35 1 1.4232 -5.3682 -1.1887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885276911.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:07 Heat of formation + Delta-G solvation = -46.058491 kcal Electronic energy + Delta-G solvation = -24459.437663 eV Core-core repulsion = 20712.140273 eV Total energy + Delta-G solvation = -3747.297390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.09647 -38.71519 -37.44529 -36.25312 -36.05898 -32.98453 -32.52527 -31.80253 -31.04846 -27.12032 -25.80798 -25.69723 -23.43879 -21.83870 -21.21028 -19.81627 -19.22002 -18.45338 -17.68640 -17.05638 -16.25578 -15.95155 -15.71480 -15.13514 -14.66976 -14.58348 -14.54234 -14.34701 -14.20487 -13.78948 -13.61511 -12.79169 -12.54127 -12.43244 -12.34636 -12.16944 -11.89975 -11.74932 -11.63991 -11.50580 -11.25954 -11.02776 -10.97331 -10.89434 -10.73833 -10.44934 -10.33064 -10.14918 -9.30830 -9.11547 -8.92522 -7.71479 -7.34811 -6.29719 -4.75850 -0.19976 0.18502 0.97723 1.42902 1.94312 2.74986 3.08874 3.14796 3.15905 3.48630 3.99251 4.15549 4.38031 4.46014 4.58146 4.65263 4.69966 5.09965 5.23276 5.34776 5.40163 5.44282 5.59551 5.61532 5.84958 5.98559 6.02351 6.05025 6.22762 6.27537 6.47200 6.61300 7.35031 7.43455 7.99134 8.20834 8.91842 9.28773 10.45955 10.64455 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.003752 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.616257 B = 7461.599259 C = 7653.766466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.575 6.575 11 N -0.640 5.640 12 C 0.108 3.892 13 C 0.102 3.898 14 N -0.984 5.984 15 S 2.718 3.282 16 O -0.944 6.944 17 O -0.946 6.946 18 C -0.785 4.785 19 C -0.062 4.062 20 C 0.067 3.933 21 N -0.437 5.437 22 S 0.385 5.615 23 C 0.105 3.895 24 C 0.105 3.895 25 H 0.270 0.730 26 H 0.046 0.954 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.172 0.828 31 H 0.194 0.806 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.093 -12.862 -2.477 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.457 6.457 11 N -0.379 5.379 12 C -0.018 4.018 13 C -0.024 4.024 14 N -0.824 5.824 15 S 2.801 3.199 16 O -0.934 6.934 17 O -0.936 6.936 18 C -0.996 4.996 19 C -0.102 4.102 20 C -0.129 4.129 21 N -0.261 5.261 22 S 0.539 5.461 23 C -0.021 4.021 24 C -0.021 4.021 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.189 0.811 31 H 0.210 0.790 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.835 -14.461 -2.757 17.169 hybrid contribution 2.087 1.945 -0.277 2.866 sum 10.922 -12.516 -3.034 16.886 Atomic orbital electron populations 1.69992 1.07096 1.27583 1.34756 1.25723 0.94623 1.00333 0.92529 0.86441 0.79865 0.81047 0.79484 1.20534 1.19159 1.19276 1.20912 0.93503 0.89181 1.54584 0.90894 1.18276 0.86940 0.82095 0.76134 1.90601 1.14337 1.85875 1.54923 1.48119 1.04358 1.05688 1.79686 1.21900 0.83397 1.00711 0.95798 1.22172 0.95393 0.83173 1.01670 1.57555 1.15832 1.21728 1.87312 1.01592 0.73433 0.72834 0.72082 1.93584 1.40514 1.85289 1.74055 1.93606 1.65595 1.56250 1.78138 1.37381 1.10102 1.18578 1.33497 1.21291 0.98040 0.98542 0.92305 1.23117 0.97282 0.96711 0.95824 1.76551 1.08183 1.19005 1.22341 1.84004 1.23985 1.45127 0.93004 1.22044 0.77207 1.01039 1.01838 1.21508 0.99505 0.85602 0.95473 0.91914 0.93611 0.87472 0.89788 0.88999 0.81087 0.78970 0.89839 0.89085 0.88308 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.96 11.84 55.55 0.66 -21.30 16 2 C 0.09 2.33 5.50 -17.36 -0.10 2.23 16 3 Si 0.91 19.03 29.56 -169.99 -5.02 14.01 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.55 -14.24 8.87 -35.63 -0.32 -14.56 16 8 H 0.07 1.69 5.66 -52.49 -0.30 1.40 16 9 C 0.56 14.83 7.62 -12.99 -0.10 14.73 16 10 O -0.58 -17.58 14.45 5.20 0.08 -17.51 16 11 N -0.64 -13.17 2.94 -173.88 -0.51 -13.68 16 12 C 0.11 1.74 6.51 -3.36 -0.02 1.72 16 13 C 0.10 1.36 6.57 -3.36 -0.02 1.34 16 14 N -0.98 -13.25 3.26 -113.00 -0.37 -13.62 16 15 S 2.72 35.06 5.86 -107.50 -0.63 34.43 16 16 O -0.94 -13.42 16.58 -57.17 -0.95 -14.37 16 17 O -0.95 -13.93 16.66 -57.17 -0.95 -14.88 16 18 C -0.78 -8.99 6.65 29.63 0.20 -8.79 16 19 C -0.06 -0.58 10.04 -40.84 -0.41 -0.99 16 20 C 0.07 0.61 11.27 -18.45 -0.21 0.40 16 21 N -0.44 -5.03 12.09 28.86 0.35 -4.68 16 22 S 0.38 4.42 23.66 -107.50 -2.54 1.88 16 23 C 0.10 1.50 6.55 -3.60 -0.02 1.48 16 24 C 0.10 1.84 6.60 -3.60 -0.02 1.82 16 25 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.11 1.78 5.34 -51.93 -0.28 1.51 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 0.99 7.09 -51.93 -0.37 0.62 16 30 H 0.17 1.19 8.06 -52.48 -0.42 0.76 16 31 H 0.19 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 1.11 7.09 -51.93 -0.37 0.74 16 34 H 0.10 1.94 6.99 -51.93 -0.36 1.58 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -35.58 323.54 -9.39 -44.97 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.34 Total: 0.52 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.02 Total: -0.63 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.13 Total: -53.29 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -1.83 Total: -46.76 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Atomic # 16 Polarization: 39.48 SS G_CDS: -3.17 Total: 36.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.58 -9.39 -44.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885276911.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.088 kcal (2) G-P(sol) polarization free energy of solvation -35.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds