Wall clock time and date at job start Tue Mar 31 2020 16:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34770 * 117.00275 * 2 1 4 4 O 1.21533 * 119.99935 * 359.97438 * 3 2 1 5 5 C 1.47233 * 120.00574 * 180.02562 * 3 2 1 6 6 C 1.40026 * 120.21587 * 89.97362 * 5 3 2 7 7 F 1.35098 * 120.05754 * 0.04255 * 6 5 3 8 8 C 1.38086 * 119.88645 * 180.02562 * 6 5 3 9 9 C 1.38472 * 120.32559 * 359.97401 * 8 6 5 10 10 C 1.38246 * 120.43703 * 359.76886 * 9 8 6 11 11 F 1.35104 * 119.94465 * 180.28002 * 10 9 8 12 12 C 1.38953 * 120.10507 * 0.51139 * 10 9 8 13 13 N 1.39373 * 120.16526 * 179.74522 * 12 10 9 14 14 C 1.34783 * 119.99760 * 275.06162 * 13 12 10 15 15 O 1.21281 * 119.99481 * 354.81124 * 14 13 12 16 16 C 1.50691 * 120.00062 * 175.07947 * 14 13 12 17 17 S 1.80997 * 109.47285 * 179.72818 * 16 14 13 18 18 C 1.76206 * 100.00275 * 180.02562 * 17 16 14 19 19 H 1.08005 * 119.99203 * 0.02562 * 18 17 16 20 20 C 1.38794 * 120.00202 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00037 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00047 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.47015 * 60.00196 * 22 20 18 24 24 H 1.48500 * 109.47323 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47406 * 300.00424 * 22 20 18 26 26 H 1.08996 * 109.47558 * 300.00481 * 1 2 3 27 27 H 1.09004 * 109.46968 * 60.00739 * 1 2 3 28 28 H 1.09004 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.83727 * 180.02562 * 8 6 5 30 30 H 1.08000 * 119.77792 * 180.02562 * 9 8 6 31 31 H 0.96992 * 120.00144 * 95.05903 * 13 12 10 32 32 H 1.09005 * 109.47648 * 299.72769 * 16 14 13 33 33 H 1.09001 * 109.46976 * 59.72363 * 16 14 13 34 34 H 0.96999 * 120.00229 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5342 1.2779 -0.0006 6 6 4.2374 1.3145 -1.2109 7 9 3.5680 1.2800 -2.3838 8 6 5.6164 1.3863 -1.2035 9 6 6.3082 1.4229 -0.0045 10 6 5.6271 1.3928 1.1982 11 9 6.3118 1.4347 2.3622 12 6 4.2399 1.3147 1.2119 13 7 3.5523 1.2790 2.4236 14 6 3.3746 0.1060 3.0633 15 8 3.7293 -0.9294 2.5406 16 6 2.7298 0.0804 4.4250 17 16 2.6262 -1.6288 5.0115 18 6 1.8556 -1.3697 6.5748 19 1 1.6013 -0.3691 6.8922 20 6 1.5744 -2.4514 7.3977 21 7 1.8830 -3.6709 7.0102 22 14 0.7581 -2.1766 9.0553 23 1 -0.5616 -1.5255 8.8553 24 1 0.5681 -3.4827 9.7361 25 1 1.6192 -1.3032 9.8925 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 6.1580 1.4149 -2.1374 30 1 7.3867 1.4795 -0.0090 31 1 3.2017 2.0982 2.8067 32 1 3.3282 0.6678 5.1215 33 1 1.7275 0.5038 4.3604 34 1 1.6868 -4.4269 7.5854 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906280163.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:56 Heat of formation + Delta-G solvation = -194.930190 kcal Electronic energy + Delta-G solvation = -25661.582131 eV Core-core repulsion = 21321.696042 eV Total energy + Delta-G solvation = -4339.886089 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.30201 -50.14581 -42.09498 -41.05229 -39.48858 -37.72938 -36.11810 -34.59896 -32.72293 -31.67798 -29.94594 -28.83256 -27.68288 -25.72946 -24.25159 -22.56913 -22.14732 -20.07249 -19.76589 -19.27146 -18.97209 -18.58013 -18.13243 -17.72015 -17.31846 -16.99325 -16.94427 -16.88662 -16.56795 -16.42073 -15.98516 -15.59519 -15.07599 -14.95626 -14.71716 -14.54574 -14.22431 -14.00914 -13.65158 -13.46629 -13.19593 -13.07107 -12.98328 -12.87944 -12.65347 -12.03870 -12.01408 -11.78937 -11.34766 -11.14424 -10.94236 -10.48729 -10.33676 -9.89114 -8.69747 -8.35967 -6.14756 -0.64507 -0.43622 0.59088 1.15175 1.28206 1.38517 1.41711 1.43606 1.53075 1.84954 2.03124 2.24983 2.76547 2.86892 2.98537 3.22691 3.29824 3.50413 3.62140 3.72492 3.98285 4.10417 4.17877 4.19061 4.39430 4.41862 4.48088 4.57644 4.68565 4.80498 4.98802 5.06843 5.40729 5.46209 5.99943 6.18397 6.25469 6.88594 7.05476 8.72925 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.003424 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.470541 B = 8176.353233 C = 9192.999959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.520 3.480 4 O -0.506 6.506 5 C -0.139 4.139 6 C 0.128 3.872 7 F -0.126 7.126 8 C -0.093 4.093 9 C -0.074 4.074 10 C 0.088 3.912 11 F -0.128 7.128 12 C 0.154 3.846 13 N -0.684 5.684 14 C 0.544 3.456 15 O -0.531 6.531 16 C -0.130 4.130 17 S -0.135 6.135 18 C -0.550 4.550 19 H 0.083 0.917 20 C 0.017 3.983 21 N -0.910 5.910 22 Si 0.997 3.003 23 H -0.262 1.262 24 H -0.278 1.278 25 H -0.262 1.262 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.207 0.793 30 H 0.202 0.798 31 H 0.429 0.571 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 14.492 -17.471 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.363 3.637 4 O -0.395 6.395 5 C -0.142 4.142 6 C 0.107 3.893 7 F -0.105 7.105 8 C -0.111 4.111 9 C -0.093 4.093 10 C 0.067 3.933 11 F -0.107 7.107 12 C 0.060 3.940 13 N -0.339 5.339 14 C 0.332 3.668 15 O -0.405 6.405 16 C -0.281 4.281 17 S 0.092 5.908 18 C -0.698 4.698 19 H 0.101 0.899 20 C -0.188 4.188 21 N -0.546 5.546 22 Si 0.818 3.182 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.187 1.187 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.224 0.776 30 H 0.219 0.781 31 H 0.270 0.730 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.792 12.858 -18.256 23.339 hybrid contribution -1.585 1.361 1.883 2.813 sum 5.207 14.219 -16.373 22.301 Atomic orbital electron populations 1.23680 0.73721 1.06050 1.03199 1.86738 1.25875 1.31803 1.82774 1.20908 0.88899 0.82057 0.71818 1.90861 1.66772 1.36337 1.45533 1.19286 0.90429 1.10488 0.94045 1.17609 0.91196 1.01765 0.78683 1.91563 1.80924 1.93502 1.44475 1.21476 0.89523 0.98425 1.01671 1.21610 1.03732 0.96061 0.87868 1.18050 0.87826 1.03818 0.83631 1.91557 1.78770 1.93598 1.46725 1.17117 0.89836 1.02227 0.84772 1.43116 1.58987 1.11100 1.20742 1.20340 0.77410 0.82680 0.86411 1.90735 1.49402 1.33117 1.67259 1.23350 1.04680 1.04564 0.95473 1.85566 1.80220 1.03422 1.21628 1.23174 1.46194 0.96774 1.03651 0.89871 1.26079 0.95798 0.93905 1.02994 1.70160 1.45950 0.99423 1.39049 0.85032 0.78818 0.77874 0.76457 1.18709 1.20328 1.18692 0.91746 0.90170 0.85521 0.77641 0.78076 0.73011 0.86498 0.87016 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.57 113.37 1.20 1.82 16 2 O -0.36 -11.26 10.58 -56.81 -0.60 -11.86 16 3 C 0.52 15.98 6.50 70.19 0.46 16.44 16 4 O -0.51 -16.44 16.90 19.73 0.33 -16.11 16 5 C -0.14 -3.70 5.77 -19.97 -0.12 -3.82 16 6 C 0.13 2.58 7.29 22.67 0.17 2.74 16 7 F -0.13 -2.68 16.83 44.97 0.76 -1.93 16 8 C -0.09 -1.06 10.00 22.29 0.22 -0.83 16 9 C -0.07 -0.92 10.00 22.33 0.22 -0.70 16 10 C 0.09 1.93 7.30 22.44 0.16 2.10 16 11 F -0.13 -3.22 17.07 44.97 0.77 -2.46 16 12 C 0.15 4.14 5.29 38.62 0.20 4.35 16 13 N -0.68 -19.76 4.46 -302.75 -1.35 -21.11 16 14 C 0.54 20.62 7.81 87.65 0.68 21.31 16 15 O -0.53 -24.55 15.84 -3.03 -0.05 -24.60 16 16 C -0.13 -5.15 6.16 71.23 0.44 -4.72 16 17 S -0.14 -7.41 20.57 -56.49 -1.16 -8.57 16 18 C -0.55 -31.04 9.50 67.95 0.65 -30.39 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.02 0.98 5.49 84.86 0.47 1.44 16 21 N -0.91 -55.18 13.22 21.65 0.29 -54.90 16 22 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.21 0.48 8.06 -2.91 -0.02 0.46 16 30 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.43 9.70 8.83 -92.71 -0.82 8.88 16 32 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 33 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -81.24 339.77 6.13 -75.11 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.37 Total: 11.56 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 4.75 Total: 9.73 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.06 Total: -76.00 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.32 Total: -52.57 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 1.52 Total: -4.38 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.16 Total: -8.57 kcal Total: -81.24 6.13 -75.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906280163.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.818 kcal (2) G-P(sol) polarization free energy of solvation -81.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds