Wall clock time and date at job start Tue Mar 31 2020 16:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46676 * 196.06349 * 3 2 1 5 5 C 1.36941 * 120.00403 * 277.00658 * 4 3 2 6 6 H 1.07994 * 119.99874 * 146.12891 * 5 4 3 7 7 C 1.38811 * 119.99675 * 326.12344 * 5 4 3 8 8 N 1.31620 * 120.00307 * 335.70026 * 7 5 4 9 9 Si 1.86803 * 119.99662 * 155.69514 * 7 5 4 10 10 H 1.48497 * 109.46854 * 84.99661 * 9 7 5 11 11 H 1.48497 * 109.47057 * 204.99738 * 9 7 5 12 12 H 1.48493 * 109.47136 * 324.99702 * 9 7 5 13 13 S 1.65606 * 119.99915 * 97.00779 * 4 3 2 14 14 O 1.42101 * 106.40278 * 203.53936 * 13 4 3 15 15 O 1.42101 * 106.40063 * 336.45866 * 13 4 3 16 16 C 1.76198 * 107.21877 * 89.99623 * 13 4 3 17 17 C 1.38256 * 119.93410 * 269.73277 * 16 13 4 18 18 C 1.38371 * 120.07027 * 179.73050 * 17 16 13 19 19 F 1.35099 * 120.03316 * 180.29134 * 18 17 16 20 20 C 1.38836 * 119.92766 * 0.56004 * 18 17 16 21 21 O 1.36012 * 120.06747 * 179.69033 * 20 18 17 22 22 C 1.42908 * 116.99800 * 270.02138 * 21 20 18 23 23 C 1.38834 * 119.86476 * 359.70923 * 20 18 17 24 24 F 1.35098 * 120.03694 * 179.97438 * 23 20 18 25 25 C 1.38257 * 119.92957 * 90.00405 * 16 13 4 26 26 H 4.40638 * 5.51454 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47081 * 76.06765 * 3 2 1 28 28 H 1.09000 * 109.47439 * 316.06307 * 3 2 1 29 29 H 0.96999 * 119.99933 * 179.97438 * 8 7 5 30 30 H 1.08004 * 119.95922 * 359.97084 * 17 16 13 31 31 H 1.08996 * 109.46686 * 179.97438 * 22 21 20 32 32 H 1.08992 * 109.46706 * 299.99861 * 22 21 20 33 33 H 1.08999 * 109.46699 * 60.00048 * 22 21 20 34 34 H 1.08000 * 119.96296 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3282 0.3822 5 6 3.2250 2.3207 -0.5569 6 1 3.0417 3.3475 -0.2769 7 6 3.5533 2.0069 -1.8686 8 7 4.2256 0.9068 -2.1337 9 14 3.0407 3.1458 -3.2577 10 1 4.0508 4.2232 -3.4126 11 1 2.9440 2.3725 -4.5217 12 1 1.7199 3.7471 -2.9430 13 16 3.5744 1.6287 1.9500 14 8 3.4600 3.0327 2.1369 15 8 2.8833 0.6792 2.7501 16 6 5.2884 1.2458 2.0924 17 6 5.6829 -0.0308 2.4475 18 6 7.0282 -0.3361 2.5548 19 9 7.4130 -1.5854 2.8961 20 6 7.9820 0.6442 2.3167 21 8 9.3051 0.3489 2.4275 22 6 9.9062 0.5354 3.7106 23 6 7.5826 1.9267 1.9658 24 9 8.5078 2.8835 1.7338 25 6 6.2358 2.2241 1.8543 26 1 -1.0503 -0.0004 -0.0003 27 1 3.0094 -0.2466 -0.9974 28 1 3.0097 -0.7392 0.7130 29 1 4.4547 0.6874 -3.0503 30 1 4.9402 -0.7916 2.6376 31 1 10.9606 0.2636 3.6607 32 1 9.8135 1.5801 4.0067 33 1 9.4028 -0.0960 4.4427 34 1 5.9244 3.2214 1.5810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915218137.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:13 Heat of formation + Delta-G solvation = -103.266481 kcal Electronic energy + Delta-G solvation = -26541.411499 eV Core-core repulsion = 22205.500247 eV Total energy + Delta-G solvation = -4335.911252 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.84432 -48.79677 -39.38871 -37.29254 -36.40859 -36.01147 -34.58368 -32.67275 -31.31625 -30.25056 -30.17978 -27.03953 -26.86232 -24.10020 -22.93195 -22.89120 -18.99079 -18.44668 -18.18971 -17.79100 -17.47064 -16.71512 -16.45776 -16.30141 -15.71000 -15.60798 -15.15751 -15.08448 -14.93321 -14.54862 -14.54441 -14.46628 -13.61444 -13.53856 -12.84492 -12.65207 -12.60702 -12.05991 -12.04880 -11.94755 -11.63874 -11.40865 -11.32242 -10.96550 -10.88548 -10.75159 -10.57082 -10.20371 -10.16753 -9.75096 -9.60374 -9.32024 -8.84556 -8.59916 -8.26203 -6.90691 -4.40674 0.68020 1.13423 1.48118 2.95999 3.04598 3.08608 3.13538 3.45547 3.55851 3.61788 3.82324 3.96692 4.35256 4.43660 4.46480 4.85663 4.85931 5.12463 5.18448 5.20082 5.28913 5.39828 5.45302 5.57716 5.67141 5.84291 5.98642 6.16287 6.33669 6.60741 6.65137 6.71576 6.88186 7.13808 7.29225 7.97903 8.33946 8.36622 8.82067 10.04360 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.005051 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.466830 B = 5542.669398 C = 6349.061558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.155 4.155 3 C 0.219 3.781 4 N -0.789 5.789 5 C -0.227 4.227 6 H 0.119 0.881 7 C 0.037 3.963 8 N -0.810 5.810 9 Si 0.929 3.071 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.260 1.260 13 S 2.504 3.496 14 O -0.975 6.975 15 O -0.994 6.994 16 C -0.596 4.596 17 C -0.065 4.065 18 C 0.086 3.914 19 F -0.128 7.128 20 C 0.050 3.950 21 O -0.322 6.322 22 C 0.032 3.968 23 C 0.088 3.912 24 F -0.127 7.127 25 C -0.053 4.053 26 H 0.210 0.790 27 H 0.131 0.869 28 H 0.083 0.917 29 H 0.283 0.717 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 -1.715 3.162 5.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.157 4.157 3 C 0.094 3.906 4 N -0.610 5.610 5 C -0.379 4.379 6 H 0.136 0.864 7 C -0.179 4.179 8 N -0.447 5.447 9 Si 0.753 3.247 10 H -0.192 1.192 11 H -0.201 1.201 12 H -0.184 1.184 13 S 2.605 3.395 14 O -0.965 6.965 15 O -0.983 6.983 16 C -0.672 4.672 17 C -0.085 4.085 18 C 0.066 3.934 19 F -0.107 7.107 20 C 0.004 3.996 21 O -0.239 6.239 22 C -0.062 4.062 23 C 0.068 3.932 24 F -0.106 7.106 25 C -0.073 4.073 26 H 0.227 0.773 27 H 0.148 0.852 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.172 0.828 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.457 -1.704 3.949 6.194 hybrid contribution 0.843 0.138 -0.578 1.032 sum 5.300 -1.566 3.371 6.473 Atomic orbital electron populations 1.24640 0.95659 1.01281 1.04105 1.23866 0.95035 0.99013 0.97805 1.18400 0.82887 0.84122 1.05220 1.53990 1.63190 1.16595 1.27238 1.20063 1.39184 0.91197 0.87451 0.86350 1.25947 0.93889 0.97543 1.00537 1.69911 1.28416 1.23800 1.22606 0.85865 0.80279 0.79744 0.78789 1.19243 1.20096 1.18424 1.13066 0.74401 0.74286 0.77728 1.93359 1.85774 1.31084 1.86259 1.93362 1.71865 1.62673 1.70411 1.32554 1.31344 0.98187 1.05068 1.20868 0.93660 0.97035 0.96981 1.17821 0.92537 0.80041 1.03006 1.91493 1.91859 1.37563 1.89756 1.18620 0.84290 0.91464 1.05259 1.86120 1.18487 1.86991 1.32271 1.23102 0.98634 1.00916 0.83590 1.17873 0.86913 0.84640 1.03814 1.91496 1.65097 1.61946 1.92031 1.20911 0.89299 1.01079 0.95963 0.77332 0.85224 0.89867 0.90592 0.82758 0.88255 0.93175 0.93210 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.27 19.25 29.55 0.57 -3.70 16 2 C -0.16 -3.17 13.61 -37.12 -0.51 -3.67 16 3 C 0.22 4.56 5.47 -6.83 -0.04 4.52 16 4 N -0.79 -17.61 2.82 -62.77 -0.18 -17.79 16 5 C -0.23 -5.17 9.08 -15.06 -0.14 -5.30 16 6 H 0.12 2.68 7.42 -52.49 -0.39 2.29 16 7 C 0.04 0.80 4.98 -17.43 -0.09 0.71 16 8 N -0.81 -17.86 11.32 55.49 0.63 -17.23 16 9 Si 0.93 17.17 29.62 -169.99 -5.03 12.13 16 10 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 11 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 12 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 13 S 2.50 55.67 5.60 -107.50 -0.60 55.07 16 14 O -0.98 -23.57 16.17 -57.17 -0.92 -24.50 16 15 O -0.99 -23.24 16.20 -57.17 -0.93 -24.17 16 16 C -0.60 -11.95 5.97 -39.57 -0.24 -12.19 16 17 C -0.07 -1.21 9.49 -39.53 -0.38 -1.59 16 18 C 0.09 1.54 7.31 -39.31 -0.29 1.26 16 19 F -0.13 -2.17 17.11 2.25 0.04 -2.14 16 20 C 0.05 0.89 5.74 -39.14 -0.22 0.66 16 21 O -0.32 -5.30 10.15 -19.78 -0.20 -5.50 16 22 C 0.03 0.38 11.13 101.05 1.13 1.50 16 23 C 0.09 1.61 7.31 -39.31 -0.29 1.32 16 24 F -0.13 -2.24 17.11 2.25 0.04 -2.20 16 25 C -0.05 -1.01 9.49 -39.53 -0.38 -1.39 16 26 H 0.21 2.81 7.80 -54.08 -0.42 2.38 16 27 H 0.13 2.74 5.37 -51.93 -0.28 2.46 16 28 H 0.08 1.58 7.54 -51.93 -0.39 1.19 16 29 H 0.28 5.82 8.31 -40.82 -0.34 5.48 16 30 H 0.15 2.63 7.60 -52.48 -0.40 2.23 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.16 2.93 7.61 -52.49 -0.40 2.53 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -27.74 332.33 -5.69 -33.43 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -2.68 Total: 5.73 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.86 Total: -17.87 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.45 Total: -35.02 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -2.05 Total: -54.16 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.08 Total: -4.33 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.60 Total: 55.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.74 -5.69 -33.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915218137.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.836 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds