Wall clock time and date at job start Tue Mar 31 2020 16:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46676 * 196.06349 * 3 2 1 5 5 C 1.36941 * 120.00403 * 277.00658 * 4 3 2 6 6 H 1.07994 * 119.99874 * 146.12891 * 5 4 3 7 7 C 1.38811 * 119.99675 * 326.12344 * 5 4 3 8 8 N 1.31620 * 120.00307 * 335.70026 * 7 5 4 9 9 Si 1.86803 * 119.99662 * 155.69514 * 7 5 4 10 10 H 1.48497 * 109.46854 * 84.99661 * 9 7 5 11 11 H 1.48497 * 109.47057 * 204.99738 * 9 7 5 12 12 H 1.48493 * 109.47136 * 324.99702 * 9 7 5 13 13 S 1.65606 * 119.99915 * 97.00779 * 4 3 2 14 14 O 1.42101 * 106.40278 * 203.53936 * 13 4 3 15 15 O 1.42101 * 106.40063 * 336.45866 * 13 4 3 16 16 C 1.76198 * 107.21877 * 89.99623 * 13 4 3 17 17 C 1.38256 * 119.93410 * 269.73277 * 16 13 4 18 18 C 1.38371 * 120.07027 * 179.73050 * 17 16 13 19 19 F 1.35099 * 120.03316 * 180.29134 * 18 17 16 20 20 C 1.38836 * 119.92766 * 0.56004 * 18 17 16 21 21 O 1.36012 * 120.06747 * 179.69033 * 20 18 17 22 22 C 1.42908 * 116.99800 * 270.02138 * 21 20 18 23 23 C 1.38834 * 119.86476 * 359.70923 * 20 18 17 24 24 F 1.35098 * 120.03694 * 179.97438 * 23 20 18 25 25 C 1.38257 * 119.92957 * 90.00405 * 16 13 4 26 26 H 4.40638 * 5.51454 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47081 * 76.06765 * 3 2 1 28 28 H 1.09000 * 109.47439 * 316.06307 * 3 2 1 29 29 H 0.96999 * 119.99933 * 179.97438 * 8 7 5 30 30 H 1.08004 * 119.95922 * 359.97084 * 17 16 13 31 31 H 1.08996 * 109.46686 * 179.97438 * 22 21 20 32 32 H 1.08992 * 109.46706 * 299.99861 * 22 21 20 33 33 H 1.08999 * 109.46699 * 60.00048 * 22 21 20 34 34 H 1.08000 * 119.96296 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3282 0.3822 5 6 3.2250 2.3207 -0.5569 6 1 3.0417 3.3475 -0.2769 7 6 3.5533 2.0069 -1.8686 8 7 4.2256 0.9068 -2.1337 9 14 3.0407 3.1458 -3.2577 10 1 4.0508 4.2232 -3.4126 11 1 2.9440 2.3725 -4.5217 12 1 1.7199 3.7471 -2.9430 13 16 3.5744 1.6287 1.9500 14 8 3.4600 3.0327 2.1369 15 8 2.8833 0.6792 2.7501 16 6 5.2884 1.2458 2.0924 17 6 5.6829 -0.0308 2.4475 18 6 7.0282 -0.3361 2.5548 19 9 7.4130 -1.5854 2.8961 20 6 7.9820 0.6442 2.3167 21 8 9.3051 0.3489 2.4275 22 6 9.9062 0.5354 3.7106 23 6 7.5826 1.9267 1.9658 24 9 8.5078 2.8835 1.7338 25 6 6.2358 2.2241 1.8543 26 1 -1.0503 -0.0004 -0.0003 27 1 3.0094 -0.2466 -0.9974 28 1 3.0097 -0.7392 0.7130 29 1 4.4547 0.6874 -3.0503 30 1 4.9402 -0.7916 2.6376 31 1 10.9606 0.2636 3.6607 32 1 9.8135 1.5801 4.0067 33 1 9.4028 -0.0960 4.4427 34 1 5.9244 3.2214 1.5810 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915218137.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:05 Heat of formation + Delta-G solvation = -119.848397 kcal Electronic energy + Delta-G solvation = -26542.130545 eV Core-core repulsion = 22205.500247 eV Total energy + Delta-G solvation = -4336.630298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -50.24627 -50.21284 -40.74727 -38.66384 -38.04471 -37.81638 -36.40681 -34.25715 -32.90879 -31.66125 -31.64017 -28.47205 -28.11462 -25.76128 -24.38883 -24.33555 -20.60931 -19.99646 -19.73613 -19.16966 -18.89463 -18.33513 -18.06022 -17.67391 -17.28523 -17.07044 -16.70961 -16.56196 -16.19799 -16.10460 -15.95732 -15.69270 -15.23359 -15.09212 -14.25265 -14.21153 -14.08686 -13.63695 -13.41503 -13.34856 -13.11391 -12.95126 -12.80013 -12.71099 -12.57043 -12.53468 -12.07819 -11.84496 -11.38316 -11.28489 -11.19593 -10.84762 -10.29148 -10.06474 -9.92070 -8.55011 -6.13137 -0.78460 -0.33819 -0.20747 1.48290 1.55361 1.64332 1.68921 1.95064 2.12934 2.18364 2.29504 2.56611 2.72395 2.79764 2.95827 3.17192 3.44023 3.79127 3.85556 3.89347 3.95076 4.21182 4.22916 4.26762 4.39162 4.40358 4.59189 4.69569 4.80776 5.06785 5.18128 5.23727 5.27054 5.51800 6.00071 6.28494 6.65867 6.89292 7.13461 8.41049 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.005051 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.466830 B = 5542.669398 C = 6349.061558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.215 4.215 3 C 0.218 3.782 4 N -0.796 5.796 5 C -0.251 4.251 6 H 0.111 0.889 7 C 0.012 3.988 8 N -0.827 5.827 9 Si 0.983 3.017 10 H -0.264 1.264 11 H -0.269 1.269 12 H -0.262 1.262 13 S 2.513 3.487 14 O -1.002 7.002 15 O -1.010 7.010 16 C -0.612 4.612 17 C -0.065 4.065 18 C 0.086 3.914 19 F -0.121 7.121 20 C 0.062 3.938 21 O -0.336 6.336 22 C 0.023 3.977 23 C 0.084 3.916 24 F -0.123 7.123 25 C -0.059 4.059 26 H 0.252 0.748 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.290 0.710 30 H 0.165 0.835 31 H 0.131 0.869 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 -2.066 2.845 6.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.217 4.217 3 C 0.093 3.907 4 N -0.616 5.616 5 C -0.402 4.402 6 H 0.128 0.872 7 C -0.202 4.202 8 N -0.465 5.465 9 Si 0.804 3.196 10 H -0.189 1.189 11 H -0.193 1.193 12 H -0.186 1.186 13 S 2.617 3.383 14 O -0.992 6.992 15 O -1.000 7.000 16 C -0.690 4.690 17 C -0.085 4.085 18 C 0.066 3.934 19 F -0.099 7.099 20 C 0.016 3.984 21 O -0.253 6.253 22 C -0.070 4.070 23 C 0.064 3.936 24 F -0.101 7.101 25 C -0.079 4.079 26 H 0.269 0.731 27 H 0.140 0.860 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.183 0.817 31 H 0.149 0.851 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.768 -2.064 3.642 6.345 hybrid contribution 0.840 0.184 -0.404 0.950 sum 5.609 -1.880 3.238 6.744 Atomic orbital electron populations 1.25654 0.96603 0.98589 1.01408 1.24117 0.95749 1.01533 1.00322 1.18395 0.83801 0.83594 1.04950 1.53951 1.63628 1.17149 1.26909 1.20160 1.40631 0.91177 0.88248 0.87182 1.26562 0.93348 0.98604 1.01686 1.69947 1.28569 1.24587 1.23366 0.85077 0.79736 0.78240 0.76500 1.18924 1.19320 1.18582 1.12636 0.74731 0.73412 0.77555 1.93310 1.86540 1.32600 1.86709 1.93321 1.72820 1.62849 1.71026 1.32194 1.30338 0.99224 1.07259 1.20986 0.94448 0.96680 0.96338 1.17740 0.92227 0.80387 1.03092 1.91509 1.91730 1.37052 1.89655 1.18674 0.85194 0.90987 1.03584 1.86087 1.17424 1.86994 1.34837 1.23455 1.00100 1.01735 0.81736 1.17804 0.86572 0.85080 1.04188 1.91503 1.64774 1.61823 1.92040 1.20957 0.89857 1.01029 0.96027 0.73139 0.85958 0.89175 0.89993 0.81705 0.85084 0.92530 0.92391 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.94 19.25 74.32 1.43 -5.50 16 2 C -0.22 -8.72 13.61 31.13 0.42 -8.29 16 3 C 0.22 9.20 5.47 84.57 0.46 9.66 16 4 N -0.80 -36.17 2.82 -352.52 -0.99 -37.16 16 5 C -0.25 -11.58 9.08 84.03 0.76 -10.82 16 6 H 0.11 5.14 7.42 -2.91 -0.02 5.11 16 7 C 0.01 0.53 4.98 84.86 0.42 0.95 16 8 N -0.83 -36.50 11.32 21.65 0.25 -36.26 16 9 Si 0.98 34.62 29.62 68.60 2.03 36.65 16 10 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 11 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 12 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 13 S 2.51 114.07 5.60 -56.49 -0.32 113.75 16 14 O -1.00 -49.73 16.17 -128.00 -2.07 -51.80 16 15 O -1.01 -47.93 16.20 -128.00 -2.07 -50.01 16 16 C -0.61 -24.80 5.97 22.28 0.13 -24.66 16 17 C -0.06 -2.38 9.49 22.31 0.21 -2.16 16 18 C 0.09 2.99 7.31 22.44 0.16 3.15 16 19 F -0.12 -3.91 17.11 44.97 0.77 -3.14 16 20 C 0.06 2.14 5.74 22.56 0.13 2.26 16 21 O -0.34 -10.39 10.15 -93.68 -0.95 -11.34 16 22 C 0.02 0.48 11.13 113.37 1.26 1.74 16 23 C 0.08 3.03 7.31 22.44 0.16 3.19 16 24 F -0.12 -4.20 17.11 44.97 0.77 -3.44 16 25 C -0.06 -2.28 9.49 22.31 0.21 -2.07 16 26 H 0.25 5.80 7.80 -4.40 -0.03 5.76 16 27 H 0.12 5.28 5.37 -2.39 -0.01 5.27 16 28 H 0.09 3.52 7.54 -2.39 -0.02 3.50 16 29 H 0.29 11.77 8.31 -92.71 -0.77 11.00 16 30 H 0.17 5.59 7.60 -2.91 -0.02 5.57 16 31 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.16 6.01 7.61 -2.91 -0.02 5.99 16 Total: -1.00 -58.63 332.33 4.35 -54.27 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.16 Total: 21.01 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 5.78 Total: -32.55 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -0.75 Total: -73.42 kcal Atomic # 8 Polarization: -108.05 SS G_CDS: -5.09 Total: -113.15 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 1.54 Total: -6.58 kcal Atomic # 14 Polarization: 34.62 SS G_CDS: 2.03 Total: 36.65 kcal Atomic # 16 Polarization: 114.07 SS G_CDS: -0.32 Total: 113.75 kcal Total: -58.63 4.35 -54.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915218137.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.574 kcal (2) G-P(sol) polarization free energy of solvation -58.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds