Wall clock time and date at job start Tue Mar 31 2020 16:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47329 * 271.30146 * 3 2 1 5 5 C 1.36936 * 119.99856 * 273.01407 * 4 3 2 6 6 H 1.07993 * 120.00274 * 187.71331 * 5 4 3 7 7 C 1.38815 * 119.99925 * 7.70766 * 5 4 3 8 8 N 1.31621 * 119.99838 * 24.88010 * 7 5 4 9 9 Si 1.86798 * 120.00282 * 204.87826 * 7 5 4 10 10 H 1.48498 * 109.47063 * 89.99707 * 9 7 5 11 11 H 1.48497 * 109.47584 * 210.00286 * 9 7 5 12 12 H 1.48501 * 109.46893 * 330.00150 * 9 7 5 13 13 S 1.65600 * 120.00091 * 93.28588 * 4 3 2 14 14 O 1.42098 * 106.40374 * 23.26716 * 13 4 3 15 15 O 1.42099 * 106.39971 * 156.18847 * 13 4 3 16 16 C 1.76197 * 107.21849 * 269.72546 * 13 4 3 17 17 C 1.38291 * 119.95029 * 115.00014 * 16 13 4 18 18 C 1.38282 * 120.05517 * 179.97438 * 17 16 13 19 19 F 1.35100 * 120.02529 * 180.02562 * 18 17 16 20 20 C 1.38952 * 119.95413 * 0.02562 * 18 17 16 21 21 O 1.35949 * 120.05172 * 179.97438 * 20 18 17 22 22 C 1.42897 * 117.00336 * 180.02562 * 21 20 18 23 23 C 1.38600 * 119.90185 * 0.02562 * 20 18 17 24 24 C 1.38425 * 119.94629 * 359.72233 * 23 20 18 25 25 F 1.35099 * 119.98215 * 180.27707 * 24 23 20 26 26 H 4.40644 * 5.51376 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47068 * 151.29699 * 3 2 1 28 28 H 1.09010 * 109.46988 * 31.30032 * 3 2 1 29 29 H 0.96997 * 119.99736 * 180.02562 * 8 7 5 30 30 H 1.07998 * 119.97005 * 359.97438 * 17 16 13 31 31 H 1.09003 * 109.47104 * 180.02562 * 22 21 20 32 32 H 1.09003 * 109.47166 * 299.99564 * 22 21 20 33 33 H 1.08994 * 109.47645 * 59.99953 * 22 21 20 34 34 H 1.08004 * 120.02839 * 179.97438 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0305 1.3808 5 6 3.3033 1.1384 2.0738 6 1 3.7789 1.1275 3.0434 7 6 2.8634 2.3375 1.5301 8 7 1.8911 2.3402 0.6429 9 14 3.6512 3.9470 2.0573 10 1 4.7999 4.2510 1.1666 11 1 2.6511 5.0409 1.9663 12 1 4.1290 3.8286 3.4584 13 16 3.4886 -1.4788 2.1014 14 8 3.7538 -2.3963 1.0492 15 8 4.4185 -1.1947 3.1376 16 6 2.0182 -2.0410 2.8929 17 6 1.3975 -3.1970 2.4558 18 6 0.2437 -3.6404 3.0757 19 9 -0.3618 -4.7700 2.6486 20 6 -0.2924 -2.9234 4.1383 21 8 -1.4270 -3.3573 4.7489 22 6 -1.9216 -2.5699 5.8340 23 6 0.3305 -1.7645 4.5742 24 6 1.4882 -1.3272 3.9540 25 9 2.0991 -0.2007 4.3819 26 1 -1.0500 0.0002 0.0000 27 1 3.0089 0.9022 -0.4936 28 1 3.0097 -0.8774 -0.5339 29 1 1.5840 3.1781 0.2627 30 1 1.8143 -3.7538 1.6296 31 1 -2.8284 -3.0266 6.2305 32 1 -1.1675 -2.5191 6.6194 33 1 -2.1460 -1.5637 5.4801 34 1 -0.0847 -1.2054 5.3997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915218373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:19 Heat of formation + Delta-G solvation = -90.417789 kcal Electronic energy + Delta-G solvation = -27179.082270 eV Core-core repulsion = 22843.728179 eV Total energy + Delta-G solvation = -4335.354091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.59031 -48.57114 -39.88513 -37.10602 -36.44391 -35.85202 -34.47173 -32.15329 -31.24369 -30.51622 -29.89584 -27.40729 -26.69287 -23.97264 -22.86755 -22.60484 -18.80097 -18.54763 -18.15908 -17.56087 -17.36107 -16.69942 -16.53079 -16.24968 -15.99920 -15.10918 -15.07813 -14.93423 -14.71458 -14.46623 -14.29623 -14.20885 -13.63083 -13.41919 -13.22517 -12.52804 -12.25494 -12.12365 -11.95571 -11.85520 -11.61815 -11.33161 -11.09479 -11.01380 -10.83823 -10.77741 -10.49510 -10.37112 -10.07194 -9.75014 -9.31454 -8.96010 -8.81501 -8.44366 -8.13949 -6.74723 -4.06601 0.99851 1.18894 1.58512 2.97801 3.02958 3.09299 3.14323 3.39860 3.70653 3.91417 4.10656 4.29504 4.37176 4.47065 4.55617 4.67323 4.89971 4.98818 5.00820 5.23782 5.29748 5.48528 5.50174 5.67557 5.74767 5.84379 6.15146 6.25250 6.33184 6.64535 6.68913 6.91254 7.05440 7.13637 7.19227 8.05172 8.40884 8.82739 8.86170 10.15068 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.005474 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.766699 B = 5113.725036 C = 5468.585920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.114 4.114 3 C 0.233 3.767 4 N -0.782 5.782 5 C -0.221 4.221 6 H 0.130 0.870 7 C 0.027 3.973 8 N -0.806 5.806 9 Si 0.934 3.066 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.261 1.261 13 S 2.500 3.500 14 O -0.996 6.996 15 O -0.975 6.975 16 C -0.701 4.701 17 C -0.004 4.004 18 C 0.031 3.969 19 F -0.134 7.134 20 C 0.149 3.851 21 O -0.306 6.306 22 C 0.023 3.977 23 C -0.246 4.246 24 C 0.229 3.771 25 F -0.107 7.107 26 H 0.196 0.804 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.279 0.721 30 H 0.160 0.840 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 -2.450 4.364 7.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.116 4.116 3 C 0.107 3.893 4 N -0.603 5.603 5 C -0.373 4.373 6 H 0.147 0.853 7 C -0.188 4.188 8 N -0.444 5.444 9 Si 0.759 3.241 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.185 1.185 13 S 2.597 3.403 14 O -0.985 6.985 15 O -0.964 6.964 16 C -0.775 4.775 17 C -0.024 4.024 18 C 0.010 3.990 19 F -0.113 7.113 20 C 0.102 3.898 21 O -0.218 6.218 22 C -0.072 4.072 23 C -0.266 4.266 24 C 0.208 3.792 25 F -0.085 7.085 26 H 0.213 0.787 27 H 0.134 0.866 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.178 0.822 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.282 -3.340 4.298 7.585 hybrid contribution -1.214 1.003 0.799 1.766 sum -6.496 -2.336 5.097 8.581 Atomic orbital electron populations 1.24200 0.95301 1.06875 1.01909 1.23344 0.94533 0.95118 0.98624 1.18548 0.83940 1.03074 0.83695 1.55804 1.70197 1.18709 1.15558 1.20457 1.28340 0.82011 1.06458 0.85293 1.25752 0.95117 1.00665 0.97256 1.70244 1.20159 1.28839 1.25205 0.85763 0.79002 0.79218 0.80132 1.19434 1.20588 1.18478 1.13823 0.78993 0.74387 0.73066 1.93315 1.85810 1.64350 1.55038 1.93369 1.61606 1.83891 1.57532 1.32521 1.30516 1.04642 1.09844 1.20620 0.90921 0.93653 0.97221 1.17018 0.96317 0.87423 0.98209 1.91474 1.82673 1.47950 1.89162 1.18690 0.86761 0.92421 0.91965 1.86143 1.37860 1.50777 1.47057 1.23170 0.99848 0.96334 0.87832 1.21019 0.99391 0.99661 1.06559 1.16686 0.89484 0.82140 0.90900 1.91642 1.81479 1.47190 1.88183 0.78717 0.86557 0.89698 0.90954 0.82218 0.87824 0.92191 0.92067 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.38 19.25 29.55 0.57 -4.81 16 2 C -0.11 -2.47 11.21 -37.12 -0.42 -2.89 16 3 C 0.23 5.01 5.45 -6.83 -0.04 4.97 16 4 N -0.78 -18.02 2.88 -62.77 -0.18 -18.20 16 5 C -0.22 -5.17 8.42 -15.06 -0.13 -5.30 16 6 H 0.13 3.06 6.83 -52.49 -0.36 2.70 16 7 C 0.03 0.59 4.92 -17.43 -0.09 0.50 16 8 N -0.81 -18.13 8.97 55.49 0.50 -17.63 16 9 Si 0.93 17.55 29.62 -169.99 -5.04 12.51 16 10 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 11 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 12 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 13 S 2.50 58.13 5.30 -107.50 -0.57 57.56 16 14 O -1.00 -23.74 15.53 -57.17 -0.89 -24.63 16 15 O -0.97 -24.78 16.18 -57.17 -0.93 -25.71 16 16 C -0.70 -14.86 5.92 -39.49 -0.23 -15.09 16 17 C 0.00 -0.09 9.52 -39.55 -0.38 -0.46 16 18 C 0.03 0.56 7.31 -39.30 -0.29 0.28 16 19 F -0.13 -2.38 17.11 2.25 0.04 -2.34 16 20 C 0.15 2.52 6.69 -39.18 -0.26 2.26 16 21 O -0.31 -4.50 10.36 -19.58 -0.20 -4.70 16 22 C 0.02 0.22 9.81 101.05 0.99 1.22 16 23 C -0.25 -4.17 9.02 -39.38 -0.36 -4.52 16 24 C 0.23 4.64 7.21 -39.44 -0.28 4.35 16 25 F -0.11 -2.28 14.78 2.25 0.03 -2.25 16 26 H 0.20 3.33 7.80 -54.09 -0.42 2.91 16 27 H 0.12 2.48 6.46 -51.93 -0.34 2.14 16 28 H 0.09 1.71 6.95 -51.92 -0.36 1.35 16 29 H 0.28 5.93 8.31 -40.82 -0.34 5.59 16 30 H 0.16 2.92 7.33 -52.49 -0.38 2.54 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 33 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 34 H 0.15 2.01 6.30 -52.48 -0.33 1.68 16 LS Contribution 320.20 15.07 4.83 4.83 Total: -1.00 -28.68 320.20 -5.86 -34.54 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -2.54 Total: 5.54 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -0.90 Total: -19.51 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.32 Total: -35.82 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -2.02 Total: -55.04 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.07 Total: -4.59 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.04 Total: 12.51 kcal Atomic # 16 Polarization: 58.13 SS G_CDS: -0.57 Total: 57.56 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.68 -5.86 -34.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915218373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.883 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds