Wall clock time and date at job start Tue Mar 31 2020 16:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47329 * 271.30146 * 3 2 1 5 5 C 1.36936 * 119.99856 * 273.01407 * 4 3 2 6 6 H 1.07993 * 120.00274 * 187.71331 * 5 4 3 7 7 C 1.38815 * 119.99925 * 7.70766 * 5 4 3 8 8 N 1.31621 * 119.99838 * 24.88010 * 7 5 4 9 9 Si 1.86798 * 120.00282 * 204.87826 * 7 5 4 10 10 H 1.48498 * 109.47063 * 89.99707 * 9 7 5 11 11 H 1.48497 * 109.47584 * 210.00286 * 9 7 5 12 12 H 1.48501 * 109.46893 * 330.00150 * 9 7 5 13 13 S 1.65600 * 120.00091 * 93.28588 * 4 3 2 14 14 O 1.42098 * 106.40374 * 23.26716 * 13 4 3 15 15 O 1.42099 * 106.39971 * 156.18847 * 13 4 3 16 16 C 1.76197 * 107.21849 * 269.72546 * 13 4 3 17 17 C 1.38291 * 119.95029 * 115.00014 * 16 13 4 18 18 C 1.38282 * 120.05517 * 179.97438 * 17 16 13 19 19 F 1.35100 * 120.02529 * 180.02562 * 18 17 16 20 20 C 1.38952 * 119.95413 * 0.02562 * 18 17 16 21 21 O 1.35949 * 120.05172 * 179.97438 * 20 18 17 22 22 C 1.42897 * 117.00336 * 180.02562 * 21 20 18 23 23 C 1.38600 * 119.90185 * 0.02562 * 20 18 17 24 24 C 1.38425 * 119.94629 * 359.72233 * 23 20 18 25 25 F 1.35099 * 119.98215 * 180.27707 * 24 23 20 26 26 H 4.40644 * 5.51376 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47068 * 151.29699 * 3 2 1 28 28 H 1.09010 * 109.46988 * 31.30032 * 3 2 1 29 29 H 0.96997 * 119.99736 * 180.02562 * 8 7 5 30 30 H 1.07998 * 119.97005 * 359.97438 * 17 16 13 31 31 H 1.09003 * 109.47104 * 180.02562 * 22 21 20 32 32 H 1.09003 * 109.47166 * 299.99564 * 22 21 20 33 33 H 1.08994 * 109.47645 * 59.99953 * 22 21 20 34 34 H 1.08004 * 120.02839 * 179.97438 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0305 1.3808 5 6 3.3033 1.1384 2.0738 6 1 3.7789 1.1275 3.0434 7 6 2.8634 2.3375 1.5301 8 7 1.8911 2.3402 0.6429 9 14 3.6512 3.9470 2.0573 10 1 4.7999 4.2510 1.1666 11 1 2.6511 5.0409 1.9663 12 1 4.1290 3.8286 3.4584 13 16 3.4886 -1.4788 2.1014 14 8 3.7538 -2.3963 1.0492 15 8 4.4185 -1.1947 3.1376 16 6 2.0182 -2.0410 2.8929 17 6 1.3975 -3.1970 2.4558 18 6 0.2437 -3.6404 3.0757 19 9 -0.3618 -4.7700 2.6486 20 6 -0.2924 -2.9234 4.1383 21 8 -1.4270 -3.3573 4.7489 22 6 -1.9216 -2.5699 5.8340 23 6 0.3305 -1.7645 4.5742 24 6 1.4882 -1.3272 3.9540 25 9 2.0991 -0.2007 4.3819 26 1 -1.0500 0.0002 0.0000 27 1 3.0089 0.9022 -0.4936 28 1 3.0097 -0.8774 -0.5339 29 1 1.5840 3.1781 0.2627 30 1 1.8143 -3.7538 1.6296 31 1 -2.8284 -3.0266 6.2305 32 1 -1.1675 -2.5191 6.6194 33 1 -2.1460 -1.5637 5.4801 34 1 -0.0847 -1.2054 5.3997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915218373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:15 Heat of formation + Delta-G solvation = -108.309736 kcal Electronic energy + Delta-G solvation = -27179.858123 eV Core-core repulsion = 22843.728179 eV Total energy + Delta-G solvation = -4336.129944 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -50.15069 -50.00767 -41.13685 -38.45014 -38.15319 -37.70666 -36.35019 -33.84855 -32.92905 -31.93083 -31.24144 -28.42832 -28.36842 -25.69435 -24.23113 -24.05609 -20.46774 -20.01964 -19.73759 -19.12661 -18.78097 -18.41497 -18.14357 -17.59714 -17.46182 -16.57910 -16.52521 -16.35488 -16.22741 -16.11135 -15.72464 -15.52104 -15.25877 -15.05839 -14.71517 -14.23025 -13.67994 -13.59109 -13.30865 -13.23593 -13.06956 -12.69404 -12.66456 -12.65130 -12.57471 -12.31023 -12.22453 -11.98111 -11.75707 -11.39637 -10.97539 -10.59867 -10.22976 -10.13964 -9.57923 -8.43797 -5.83561 -0.48417 -0.26678 -0.14137 1.52109 1.58209 1.66181 1.85160 1.89905 2.08836 2.33053 2.45942 2.76514 2.83016 2.90197 2.95166 3.16530 3.36978 3.74222 3.92335 3.98836 4.15439 4.22386 4.25059 4.29376 4.48644 4.51534 4.65359 4.73520 4.81462 4.95111 5.22101 5.32042 5.38024 5.47619 5.95540 6.30878 6.65873 7.10757 7.20977 8.45938 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.005474 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.766699 B = 5113.725036 C = 5468.585920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.147 4.147 3 C 0.232 3.768 4 N -0.788 5.788 5 C -0.242 4.242 6 H 0.118 0.882 7 C 0.002 3.998 8 N -0.817 5.817 9 Si 0.992 3.008 10 H -0.264 1.264 11 H -0.273 1.273 12 H -0.264 1.264 13 S 2.503 3.497 14 O -1.012 7.012 15 O -1.005 7.005 16 C -0.724 4.724 17 C -0.011 4.011 18 C 0.025 3.975 19 F -0.131 7.131 20 C 0.164 3.836 21 O -0.311 6.311 22 C 0.008 3.992 23 C -0.234 4.234 24 C 0.209 3.791 25 F -0.119 7.119 26 H 0.226 0.774 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.285 0.715 30 H 0.161 0.839 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.880 -1.777 5.389 9.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.149 4.149 3 C 0.107 3.893 4 N -0.608 5.608 5 C -0.393 4.393 6 H 0.136 0.864 7 C -0.211 4.211 8 N -0.455 5.455 9 Si 0.813 3.187 10 H -0.189 1.189 11 H -0.198 1.198 12 H -0.188 1.188 13 S 2.603 3.397 14 O -1.001 7.001 15 O -0.995 6.995 16 C -0.802 4.802 17 C -0.031 4.031 18 C 0.004 3.996 19 F -0.110 7.110 20 C 0.116 3.884 21 O -0.224 6.224 22 C -0.086 4.086 23 C -0.253 4.253 24 C 0.188 3.812 25 F -0.097 7.097 26 H 0.243 0.757 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.179 0.821 31 H 0.153 0.847 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.333 -2.675 5.303 9.437 hybrid contribution -0.765 0.723 0.548 1.187 sum -8.097 -1.952 5.851 10.179 Atomic orbital electron populations 1.24952 0.96164 1.05525 1.00500 1.23559 0.95048 0.96395 0.99935 1.18561 0.84417 1.03195 0.83099 1.55771 1.70746 1.18362 1.15909 1.20518 1.29437 0.82697 1.06680 0.86433 1.26412 0.95098 1.02600 0.96996 1.70300 1.20339 1.29745 1.25142 0.84930 0.78344 0.75818 0.79578 1.18874 1.19840 1.18772 1.13702 0.79035 0.74363 0.72560 1.93269 1.86396 1.64945 1.55529 1.93310 1.63299 1.84417 1.58490 1.32164 1.30461 1.06160 1.11428 1.20626 0.91578 0.93342 0.97568 1.17054 0.96145 0.87669 0.98716 1.91476 1.82506 1.47817 1.89221 1.18683 0.87068 0.91574 0.91058 1.86171 1.36383 1.51706 1.48129 1.23644 1.01404 0.96805 0.86711 1.21276 0.97822 0.99524 1.06711 1.16983 0.90751 0.82097 0.91417 1.91607 1.81953 1.47833 1.88312 0.75743 0.86746 0.89167 0.90418 0.82103 0.84714 0.90711 0.91016 0.79824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.98 19.25 74.32 1.43 -8.54 16 2 C -0.15 -6.37 11.21 31.12 0.35 -6.02 16 3 C 0.23 10.18 5.45 84.57 0.46 10.64 16 4 N -0.79 -37.13 2.88 -352.51 -1.02 -38.14 16 5 C -0.24 -11.47 8.42 84.03 0.71 -10.77 16 6 H 0.12 5.75 6.83 -2.91 -0.02 5.73 16 7 C 0.00 0.09 4.92 84.86 0.42 0.51 16 8 N -0.82 -36.24 8.97 21.65 0.19 -36.05 16 9 Si 0.99 35.27 29.62 68.60 2.03 37.30 16 10 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 11 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 12 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 13 S 2.50 120.09 5.30 -56.49 -0.30 119.79 16 14 O -1.01 -49.86 15.53 -128.00 -1.99 -51.85 16 15 O -1.01 -53.08 16.18 -128.00 -2.07 -55.15 16 16 C -0.72 -31.12 5.92 22.33 0.13 -30.99 16 17 C -0.01 -0.44 9.52 22.29 0.21 -0.23 16 18 C 0.02 0.88 7.31 22.45 0.16 1.04 16 19 F -0.13 -4.51 17.11 44.97 0.77 -3.74 16 20 C 0.16 5.19 6.69 22.53 0.15 5.35 16 21 O -0.31 -8.12 10.36 -92.98 -0.96 -9.09 16 22 C 0.01 0.12 9.81 113.37 1.11 1.23 16 23 C -0.23 -7.40 9.02 22.40 0.20 -7.19 16 24 C 0.21 8.37 7.21 22.36 0.16 8.53 16 25 F -0.12 -5.10 14.78 44.97 0.66 -4.44 16 26 H 0.23 7.09 7.80 -4.42 -0.03 7.05 16 27 H 0.11 4.97 6.46 -2.39 -0.02 4.95 16 28 H 0.09 3.75 6.95 -2.38 -0.02 3.73 16 29 H 0.28 11.76 8.31 -92.71 -0.77 10.99 16 30 H 0.16 6.04 7.33 -2.91 -0.02 6.02 16 31 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 33 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 34 H 0.18 4.33 6.30 -2.91 -0.02 4.31 16 Total: -1.00 -61.68 320.20 3.99 -57.68 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 1.17 Total: 20.13 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 5.50 Total: -36.45 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -0.82 Total: -74.19 kcal Atomic # 8 Polarization: -111.06 SS G_CDS: -5.02 Total: -116.09 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 1.43 Total: -8.17 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Atomic # 16 Polarization: 120.09 SS G_CDS: -0.30 Total: 119.79 kcal Total: -61.68 3.99 -57.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915218373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.625 kcal (2) G-P(sol) polarization free energy of solvation -61.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds