Wall clock time and date at job start Tue Mar 31 2020 16:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00209 * 2 1 4 4 H 1.48500 * 109.47392 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47164 * 299.99957 * 3 2 1 6 6 H 1.48501 * 109.47574 * 59.99937 * 3 2 1 7 7 C 1.37875 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99812 * 172.22912 * 7 2 1 9 9 C 1.50697 * 120.00292 * 352.23145 * 7 2 1 10 10 C 1.53008 * 115.54863 * 84.78316 * 9 7 2 11 11 S 1.81403 * 109.46996 * 65.19755 * 10 9 7 12 12 O 1.42107 * 110.54179 * 285.43516 * 11 10 9 13 13 O 1.42101 * 110.54667 * 62.18420 * 11 10 9 14 14 N 1.65598 * 104.44822 * 173.81231 * 11 10 9 15 15 C 1.46498 * 119.99983 * 64.99823 * 14 11 10 16 16 C 1.50701 * 109.46858 * 164.99933 * 15 14 11 17 17 C 1.38351 * 119.98226 * 94.72842 * 16 15 14 18 18 N 1.32156 * 120.01420 * 179.75627 * 17 16 15 19 19 C 1.32238 * 119.98494 * 0.51511 * 18 17 16 20 20 Cl 1.73594 * 120.01537 * 179.76029 * 19 18 17 21 21 C 1.38529 * 119.96740 * 359.73309 * 19 18 17 22 22 N 1.32112 * 119.97740 * 0.02562 * 21 19 18 23 23 C 1.52998 * 117.50011 * 230.45351 * 9 7 2 24 24 C 1.53001 * 117.50024 * 299.11344 * 9 7 2 25 25 H 0.97009 * 119.99736 * 5.01695 * 1 2 3 26 26 H 1.08999 * 109.47023 * 305.19609 * 10 9 7 27 27 H 1.08997 * 109.46770 * 185.19425 * 10 9 7 28 28 H 0.96998 * 120.00181 * 244.99540 * 14 11 10 29 29 H 1.09000 * 109.47323 * 284.99621 * 15 14 11 30 30 H 1.09004 * 109.47472 * 45.00472 * 15 14 11 31 31 H 1.07995 * 119.99126 * 359.97438 * 17 16 15 32 32 H 1.07997 * 120.00644 * 179.97438 * 21 19 18 33 33 H 1.09004 * 117.49583 * 215.00001 * 23 9 7 34 34 H 1.09001 * 117.50062 * 0.02562 * 23 9 7 35 35 H 1.08998 * 117.49626 * 359.97438 * 24 9 7 36 36 H 1.08997 * 117.49705 * 144.97069 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0770 -1.1985 -0.1259 9 6 1.2613 -2.4931 0.1775 10 6 0.6667 -3.0923 -1.0986 11 16 2.0069 -3.5643 -2.2264 12 8 2.5778 -2.4125 -2.8321 13 8 2.8266 -4.5639 -1.6362 14 7 1.2436 -4.3447 -3.4716 15 6 0.3176 -3.6110 -4.3378 16 6 0.0487 -4.4170 -5.5824 17 6 -1.0592 -5.2433 -5.6451 18 7 -1.2983 -5.9467 -6.7381 19 6 -0.4727 -5.8685 -7.7681 20 17 -0.7826 -6.7969 -9.2018 21 6 0.6392 -5.0449 -7.7027 22 7 0.8743 -4.3386 -6.6112 23 6 1.7803 -3.4649 1.2391 24 6 0.4825 -2.6897 1.4797 25 1 -0.4850 0.8369 -0.0735 26 1 0.0273 -2.3543 -1.5829 27 1 0.0774 -3.9737 -0.8457 28 1 1.4096 -5.2876 -3.6274 29 1 -0.6187 -3.4398 -3.8065 30 1 0.7593 -2.6534 -4.6135 31 1 -1.7308 -5.3108 -4.8020 32 1 1.3141 -4.9808 -8.5434 33 1 1.6981 -4.5312 1.0284 34 1 2.6590 -3.1646 1.8099 35 1 0.5080 -1.8797 2.2086 36 1 -0.4536 -3.2456 1.4272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921534612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:06 Heat of formation + Delta-G solvation = -3.386491 kcal Electronic energy + Delta-G solvation = -23502.622599 eV Core-core repulsion = 19755.131900 eV Total energy + Delta-G solvation = -3747.490699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.60212 -37.33692 -36.80308 -36.36909 -35.78957 -35.12119 -34.50665 -32.07851 -31.59225 -28.23433 -26.85765 -25.49274 -25.24026 -23.05783 -21.25145 -19.83350 -18.80556 -18.36261 -17.83028 -17.34744 -16.73596 -16.29234 -15.76101 -15.32750 -15.17101 -14.76118 -14.48854 -14.23829 -13.82974 -13.54022 -13.23114 -13.03566 -12.53866 -12.12023 -12.00443 -11.89111 -11.85409 -11.56969 -11.47173 -11.33927 -11.21153 -11.05439 -10.97337 -10.60744 -10.49411 -10.17018 -9.80119 -9.60205 -9.58653 -9.40041 -8.99195 -8.60706 -8.14387 -6.17984 -4.28255 0.07393 0.55731 0.99734 1.20874 3.00447 3.26765 3.35052 3.42372 3.45540 3.55615 3.78182 3.88563 4.33855 4.34914 4.47700 4.55801 4.93785 4.96338 5.10011 5.16657 5.22206 5.38097 5.56374 5.70382 5.86490 5.93115 6.20658 6.32105 6.55780 6.63072 6.68737 6.93676 7.04579 7.18236 7.20028 7.35647 7.77406 8.16417 8.77975 9.43383 10.89637 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.002913 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.954073 B = 9608.189799 C =10026.418112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.082 3.918 3 Si 0.892 3.108 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.069 0.931 9 C 0.043 3.957 10 C -0.553 4.553 11 S 2.605 3.395 12 O -0.944 6.944 13 O -0.970 6.970 14 N -1.128 6.128 15 C 0.170 3.830 16 C 0.079 3.921 17 C 0.087 3.913 18 N -0.431 5.431 19 C 0.119 3.881 20 Cl -0.014 7.014 21 C 0.077 3.923 22 N -0.402 5.402 23 C -0.208 4.208 24 C -0.140 4.140 25 H 0.263 0.737 26 H 0.135 0.865 27 H 0.101 0.899 28 H 0.410 0.590 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.186 0.814 32 H 0.182 0.818 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 -11.031 -13.441 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.040 3.960 10 C -0.687 4.687 11 S 2.703 3.297 12 O -0.934 6.934 13 O -0.960 6.960 14 N -0.884 5.884 15 C 0.042 3.958 16 C -0.063 4.063 17 C -0.074 4.074 18 N -0.148 5.148 19 C -0.048 4.048 20 Cl 0.015 6.985 21 C -0.084 4.084 22 N -0.117 5.117 23 C -0.246 4.246 24 C -0.180 4.180 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.120 0.880 28 H 0.242 0.758 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.202 0.798 32 H 0.199 0.801 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.153 -10.632 -13.462 17.649 hybrid contribution -0.510 0.316 -0.203 0.633 sum -4.662 -10.316 -13.664 17.745 Atomic orbital electron populations 1.69980 1.06020 1.27121 1.47863 1.24946 0.94820 0.99241 0.93279 0.86515 0.80787 0.83128 0.77656 1.19215 1.20595 1.20872 1.20577 0.93783 0.88573 1.52385 0.91259 1.18283 0.99068 0.94377 0.84268 1.29988 1.16398 1.08580 1.13696 1.05303 0.76514 0.73765 0.74152 1.93550 1.74710 1.50749 1.74346 1.93518 1.65232 1.59550 1.77709 1.56066 1.62257 1.22488 1.47594 1.20086 0.95011 0.95038 0.85651 1.22454 0.91984 0.96318 0.95571 1.23773 0.96656 0.91389 0.95590 1.67867 1.27901 1.19656 0.99328 1.22952 0.94271 0.96108 0.91481 1.98432 1.95756 1.71730 1.32615 1.23732 0.95247 0.91973 0.97497 1.68511 1.26892 1.17455 0.98887 1.23206 0.98715 0.96036 1.06600 1.22556 0.92571 1.01026 1.01811 0.92763 0.84698 0.88038 0.75813 0.89022 0.87454 0.79760 0.80124 0.90652 0.89507 0.89573 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.13 12.98 55.43 0.72 -22.41 16 2 C 0.08 2.17 5.38 -17.82 -0.10 2.08 16 3 Si 0.89 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -13.67 8.18 -34.44 -0.28 -13.96 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 C 0.04 0.99 1.32 -155.66 -0.21 0.78 16 10 C -0.55 -10.65 5.93 37.16 0.22 -10.43 16 11 S 2.61 49.28 5.19 -107.50 -0.56 48.73 16 12 O -0.94 -21.50 17.17 -57.54 -0.99 -22.49 16 13 O -0.97 -20.41 18.08 -57.54 -1.04 -21.45 16 14 N -1.13 -15.28 5.88 -11.65 -0.07 -15.35 16 15 C 0.17 1.99 6.46 -5.19 -0.03 1.95 16 16 C 0.08 0.85 6.18 -82.42 -0.51 0.34 16 17 C 0.09 0.80 10.86 -17.37 -0.19 0.62 16 18 N -0.43 -4.54 10.49 -10.17 -0.11 -4.65 16 19 C 0.12 1.16 7.29 -17.27 -0.13 1.04 16 20 Cl -0.01 -0.11 29.13 -51.86 -1.51 -1.62 16 21 C 0.08 0.73 11.01 -17.32 -0.19 0.54 16 22 N -0.40 -4.74 10.42 -9.26 -0.10 -4.83 16 23 C -0.21 -4.40 9.96 -26.70 -0.27 -4.67 16 24 C -0.14 -3.06 9.49 -26.69 -0.25 -3.32 16 25 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 26 H 0.13 2.63 8.14 -51.92 -0.42 2.21 16 27 H 0.10 1.59 8.09 -51.93 -0.42 1.17 16 28 H 0.41 4.80 8.61 -34.47 -0.30 4.50 16 29 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 30 H 0.11 1.42 7.69 -51.93 -0.40 1.02 16 31 H 0.19 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 35 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -33.30 347.68 -9.40 -42.70 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.04 Total: 5.26 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -1.93 Total: -25.03 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.45 Total: -47.25 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -2.03 Total: -43.93 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 49.28 SS G_CDS: -0.56 Total: 48.73 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.51 Total: -1.62 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.30 -9.40 -42.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921534612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.314 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds