Wall clock time and date at job start Tue Mar 31 2020 16:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00209 * 2 1 4 4 H 1.48500 * 109.47392 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47164 * 299.99957 * 3 2 1 6 6 H 1.48501 * 109.47574 * 59.99937 * 3 2 1 7 7 C 1.37875 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99812 * 172.22912 * 7 2 1 9 9 C 1.50697 * 120.00292 * 352.23145 * 7 2 1 10 10 C 1.53008 * 115.54863 * 84.78316 * 9 7 2 11 11 S 1.81403 * 109.46996 * 65.19755 * 10 9 7 12 12 O 1.42107 * 110.54179 * 285.43516 * 11 10 9 13 13 O 1.42101 * 110.54667 * 62.18420 * 11 10 9 14 14 N 1.65598 * 104.44822 * 173.81231 * 11 10 9 15 15 C 1.46498 * 119.99983 * 64.99823 * 14 11 10 16 16 C 1.50701 * 109.46858 * 164.99933 * 15 14 11 17 17 C 1.38351 * 119.98226 * 94.72842 * 16 15 14 18 18 N 1.32156 * 120.01420 * 179.75627 * 17 16 15 19 19 C 1.32238 * 119.98494 * 0.51511 * 18 17 16 20 20 Cl 1.73594 * 120.01537 * 179.76029 * 19 18 17 21 21 C 1.38529 * 119.96740 * 359.73309 * 19 18 17 22 22 N 1.32112 * 119.97740 * 0.02562 * 21 19 18 23 23 C 1.52998 * 117.50011 * 230.45351 * 9 7 2 24 24 C 1.53001 * 117.50024 * 299.11344 * 9 7 2 25 25 H 0.97009 * 119.99736 * 5.01695 * 1 2 3 26 26 H 1.08999 * 109.47023 * 305.19609 * 10 9 7 27 27 H 1.08997 * 109.46770 * 185.19425 * 10 9 7 28 28 H 0.96998 * 120.00181 * 244.99540 * 14 11 10 29 29 H 1.09000 * 109.47323 * 284.99621 * 15 14 11 30 30 H 1.09004 * 109.47472 * 45.00472 * 15 14 11 31 31 H 1.07995 * 119.99126 * 359.97438 * 17 16 15 32 32 H 1.07997 * 120.00644 * 179.97438 * 21 19 18 33 33 H 1.09004 * 117.49583 * 215.00001 * 23 9 7 34 34 H 1.09001 * 117.50062 * 0.02562 * 23 9 7 35 35 H 1.08998 * 117.49626 * 359.97438 * 24 9 7 36 36 H 1.08997 * 117.49705 * 144.97069 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0770 -1.1985 -0.1259 9 6 1.2613 -2.4931 0.1775 10 6 0.6667 -3.0923 -1.0986 11 16 2.0069 -3.5643 -2.2264 12 8 2.5778 -2.4125 -2.8321 13 8 2.8266 -4.5639 -1.6362 14 7 1.2436 -4.3447 -3.4716 15 6 0.3176 -3.6110 -4.3378 16 6 0.0487 -4.4170 -5.5824 17 6 -1.0592 -5.2433 -5.6451 18 7 -1.2983 -5.9467 -6.7381 19 6 -0.4727 -5.8685 -7.7681 20 17 -0.7826 -6.7969 -9.2018 21 6 0.6392 -5.0449 -7.7027 22 7 0.8743 -4.3386 -6.6112 23 6 1.7803 -3.4649 1.2391 24 6 0.4825 -2.6897 1.4797 25 1 -0.4850 0.8369 -0.0735 26 1 0.0273 -2.3543 -1.5829 27 1 0.0774 -3.9737 -0.8457 28 1 1.4096 -5.2876 -3.6274 29 1 -0.6187 -3.4398 -3.8065 30 1 0.7593 -2.6534 -4.6135 31 1 -1.7308 -5.3108 -4.8020 32 1 1.3141 -4.9808 -8.5434 33 1 1.6981 -4.5312 1.0284 34 1 2.6590 -3.1646 1.8099 35 1 0.5080 -1.8797 2.2086 36 1 -0.4536 -3.2456 1.4272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921534612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:05 Heat of formation + Delta-G solvation = -28.656004 kcal Electronic energy + Delta-G solvation = -23503.718368 eV Core-core repulsion = 19755.131900 eV Total energy + Delta-G solvation = -3748.586468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35187 -38.52540 -38.07008 -37.91698 -36.87472 -36.63432 -35.32088 -34.04982 -32.44140 -29.80805 -27.76873 -27.43882 -25.97004 -23.89664 -22.94380 -21.51729 -20.28238 -19.15596 -18.74288 -18.42009 -18.32705 -17.66768 -16.80950 -16.70383 -16.52572 -16.27943 -15.80369 -15.42517 -15.07305 -14.89188 -14.49356 -14.02964 -13.71935 -13.60259 -13.29621 -13.09307 -12.93089 -12.88484 -12.87986 -12.83136 -12.78415 -12.52065 -12.41978 -12.29764 -12.17486 -11.87415 -11.52135 -10.83686 -10.61983 -10.50684 -10.35638 -10.30341 -9.84073 -8.16961 -6.30255 -0.75812 -0.41486 -0.16208 0.50596 1.38625 1.43046 1.53252 1.97888 2.42096 2.43913 2.77205 3.00413 3.08029 3.10878 3.21062 3.43284 3.47010 3.61422 3.80849 4.01157 4.34137 4.35413 4.41993 4.52055 4.57022 4.63761 4.75785 4.90623 4.99434 5.03016 5.26896 5.51792 5.63892 5.75696 5.90451 6.03538 6.26726 6.44387 6.75545 7.41893 8.89902 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.002913 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.954073 B = 9608.189799 C =10026.418112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.047 3.953 3 Si 0.931 3.069 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.011 3.989 10 C -0.548 4.548 11 S 2.622 3.378 12 O -0.992 6.992 13 O -0.995 6.995 14 N -1.111 6.111 15 C 0.162 3.838 16 C 0.069 3.931 17 C 0.097 3.903 18 N -0.448 5.448 19 C 0.117 3.883 20 Cl -0.002 7.002 21 C 0.075 3.925 22 N -0.432 5.432 23 C -0.200 4.200 24 C -0.136 4.136 25 H 0.266 0.734 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.421 0.579 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.218 0.782 32 H 0.205 0.795 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 -12.305 -13.993 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.157 4.157 3 Si 0.757 3.243 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.064 0.936 9 C 0.008 3.992 10 C -0.681 4.681 11 S 2.720 3.280 12 O -0.981 6.981 13 O -0.985 6.985 14 N -0.871 5.871 15 C 0.036 3.964 16 C -0.073 4.073 17 C -0.063 4.063 18 N -0.165 5.165 19 C -0.050 4.050 20 Cl 0.026 6.974 21 C -0.086 4.086 22 N -0.148 5.148 23 C -0.237 4.237 24 C -0.175 4.175 25 H 0.075 0.925 26 H 0.151 0.849 27 H 0.161 0.839 28 H 0.256 0.744 29 H 0.146 0.854 30 H 0.105 0.895 31 H 0.234 0.766 32 H 0.222 0.778 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.623 -11.913 -14.012 19.232 hybrid contribution -0.053 0.656 -0.104 0.666 sum -5.676 -11.257 -14.116 18.926 Atomic orbital electron populations 1.70000 1.06334 1.27673 1.48347 1.25430 0.95614 1.01206 0.93425 0.85916 0.79433 0.80896 0.78055 1.20097 1.20108 1.19896 1.20730 0.93103 0.90795 1.52600 0.93619 1.18409 1.00295 0.94120 0.86339 1.29846 1.16422 1.10043 1.11817 1.04457 0.76375 0.72767 0.74370 1.93494 1.76203 1.52982 1.75442 1.93472 1.66554 1.59857 1.78645 1.55464 1.62320 1.22868 1.46430 1.20322 0.95708 0.94054 0.86360 1.22341 0.92800 0.97043 0.95075 1.24190 0.96217 0.89943 0.95997 1.67950 1.28333 1.20286 0.99882 1.23127 0.94181 0.95989 0.91728 1.98437 1.95672 1.71360 1.31889 1.24068 0.95582 0.91386 0.97527 1.68461 1.27975 1.18474 0.99889 1.23255 0.98158 0.97062 1.05213 1.22519 0.93907 1.00732 1.00386 0.92512 0.84944 0.83873 0.74403 0.85432 0.89523 0.76582 0.77824 0.88119 0.90323 0.91777 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.57 12.98 21.45 0.28 -46.29 16 2 C 0.05 2.47 5.38 84.65 0.46 2.92 16 3 Si 0.93 43.08 29.55 68.60 2.03 45.11 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -28.68 8.18 25.60 0.21 -28.47 16 8 H 0.05 2.59 7.83 -2.91 -0.02 2.56 16 9 C 0.01 0.48 1.32 -52.93 -0.07 0.41 16 10 C -0.55 -20.02 5.93 71.98 0.43 -19.59 16 11 S 2.62 97.21 5.19 -56.49 -0.29 96.91 16 12 O -0.99 -45.95 17.17 -127.65 -2.19 -48.14 16 13 O -0.99 -41.03 18.08 -127.65 -2.31 -43.34 16 14 N -1.11 -28.20 5.88 -190.79 -1.12 -29.32 16 15 C 0.16 3.52 6.46 85.63 0.55 4.07 16 16 C 0.07 1.37 6.18 42.54 0.26 1.64 16 17 C 0.10 1.54 10.86 84.67 0.92 2.46 16 18 N -0.45 -8.44 10.49 -186.09 -1.95 -10.39 16 19 C 0.12 2.07 7.29 84.70 0.62 2.69 16 20 Cl 0.00 -0.03 29.13 -2.72 -0.08 -0.11 16 21 C 0.08 1.32 11.01 84.72 0.93 2.25 16 22 N -0.43 -9.70 10.42 -183.20 -1.91 -11.61 16 23 C -0.20 -8.16 9.96 30.62 0.30 -7.86 16 24 C -0.14 -5.75 9.49 30.62 0.29 -5.46 16 25 H 0.27 13.25 8.32 -92.70 -0.77 12.47 16 26 H 0.13 4.94 8.14 -2.39 -0.02 4.92 16 27 H 0.14 3.93 8.09 -2.39 -0.02 3.91 16 28 H 0.42 9.00 8.61 -96.75 -0.83 8.16 16 29 H 0.13 1.82 8.05 -2.39 -0.02 1.81 16 30 H 0.09 2.27 7.69 -2.39 -0.02 2.25 16 31 H 0.22 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.21 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.10 3.57 8.14 -2.38 -0.02 3.55 16 34 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -71.99 347.68 -2.35 -74.34 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.29 Total: 17.78 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 4.90 Total: -44.93 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -4.70 Total: -97.61 kcal Atomic # 8 Polarization: -86.98 SS G_CDS: -4.50 Total: -91.48 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 97.21 SS G_CDS: -0.29 Total: 96.91 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -71.99 -2.35 -74.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921534612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.686 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds