Wall clock time and date at job start Tue Mar 31 2020 16:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00238 * 2 1 4 4 H 1.48503 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47338 * 299.99850 * 3 2 1 6 6 H 1.48499 * 109.47183 * 59.99760 * 3 2 1 7 7 C 1.37881 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99714 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00016 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46735 * 60.00220 * 9 7 2 11 11 N 1.46493 * 109.46943 * 180.02562 * 9 7 2 12 12 C 1.34782 * 120.00049 * 205.00163 * 11 9 7 13 13 O 1.21568 * 119.99473 * 0.02562 * 12 11 9 14 14 C 1.47706 * 119.99832 * 179.97438 * 12 11 9 15 15 N 1.31809 * 126.52538 * 0.02698 * 14 12 11 16 16 N 1.28466 * 110.07776 * 179.97438 * 15 14 12 17 17 H 0.97001 * 124.88210 * 179.97438 * 16 15 14 18 18 C 1.35032 * 110.22744 * 0.23353 * 16 15 14 19 19 C 1.35363 * 107.23257 * 359.62253 * 18 16 15 20 20 C 1.50703 * 127.24873 * 180.09565 * 19 18 16 21 21 F 1.39899 * 109.47214 * 0.31196 * 20 19 18 22 22 F 1.39903 * 109.47085 * 120.31374 * 20 19 18 23 23 F 1.39904 * 109.46833 * 240.31189 * 20 19 18 24 24 C 1.52994 * 109.47240 * 300.00308 * 9 7 2 25 25 F 1.39901 * 109.47352 * 299.99711 * 24 9 7 26 26 F 1.39902 * 109.47334 * 60.00135 * 24 9 7 27 27 F 1.39898 * 109.47132 * 180.02562 * 24 9 7 28 28 H 0.97004 * 120.00051 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00311 * 25.00456 * 11 9 7 30 30 H 1.08002 * 126.38063 * 179.73544 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6239 -2.5575 -0.8880 11 7 2.2028 -3.6127 0.0027 12 6 1.8367 -4.8128 -0.4896 13 8 0.7166 -4.9710 -0.9348 14 6 2.7967 -5.9353 -0.4890 15 7 4.0361 -5.9074 -0.0414 16 7 4.5862 -7.0582 -0.1941 17 1 5.4960 -7.2765 0.0619 18 6 3.7176 -7.9185 -0.7675 19 6 2.5604 -7.2456 -0.9685 20 6 1.2902 -7.7778 -1.5802 21 9 1.4659 -9.1225 -1.9240 22 9 0.2451 -7.6652 -0.6569 23 9 0.9803 -7.0398 -2.7277 24 6 0.3717 -2.5794 1.2512 25 9 1.1763 -2.5046 2.3932 26 9 -0.5374 -1.5160 1.2508 27 9 -0.3274 -3.7912 1.2526 28 1 -0.4850 0.8401 -0.0004 29 1 3.0967 -3.4864 0.3577 30 1 3.9097 -8.9515 -1.0172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799972.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:17 Heat of formation + Delta-G solvation = -242.719573 kcal Electronic energy + Delta-G solvation = -29802.669675 eV Core-core repulsion = 24384.934117 eV Total energy + Delta-G solvation = -5417.735557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.82309 -48.32867 -47.41988 -47.19136 -45.97932 -45.59394 -43.02763 -38.79214 -34.74875 -32.75405 -32.58871 -31.47913 -28.46356 -26.06390 -24.66400 -24.09860 -21.70621 -21.11672 -19.88490 -19.24422 -18.15392 -17.97891 -17.62033 -16.84537 -16.80625 -16.64131 -16.52609 -15.93148 -15.70438 -14.91660 -14.37190 -14.25281 -14.14667 -13.91793 -13.74349 -13.63724 -13.39990 -13.39220 -13.07968 -12.89521 -12.48538 -12.37405 -12.34072 -12.26582 -11.97193 -11.80189 -11.26145 -11.14838 -10.86668 -10.81678 -10.42519 -9.81279 -9.72338 -9.65792 -9.63423 -8.73203 -8.31369 -6.23491 -4.47312 1.39500 1.51062 2.36352 2.96276 3.18874 3.26056 3.29648 3.57009 3.63732 3.84876 4.12773 4.21098 4.48228 4.58807 4.68048 4.70087 4.93717 5.02910 5.32213 5.71526 5.85975 5.87940 6.21644 6.53678 6.89643 7.08327 7.38848 7.50025 7.62907 8.24706 8.48610 8.74200 9.20130 10.68310 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.004268 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.614142 B = 6559.089550 C = 7029.409065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.244 3.756 10 H 0.090 0.910 11 N -0.691 5.691 12 C 0.583 3.417 13 O -0.509 6.509 14 C 0.054 3.946 15 N -0.247 5.247 16 N -0.377 5.377 17 H 0.454 0.546 18 C 0.053 3.947 19 C -0.260 4.260 20 C 0.551 3.449 21 F -0.187 7.187 22 F -0.163 7.163 23 F -0.165 7.165 24 C 0.417 3.583 25 F -0.209 7.209 26 F -0.136 7.136 27 F -0.216 7.216 28 H 0.268 0.732 29 H 0.406 0.594 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.423 -14.896 -1.050 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.097 0.903 9 C 0.139 3.861 10 H 0.107 0.893 11 N -0.341 5.341 12 C 0.364 3.636 13 O -0.382 6.382 14 C -0.110 4.110 15 N -0.081 5.081 16 N -0.089 5.089 17 H 0.299 0.701 18 C -0.094 4.094 19 C -0.272 4.272 20 C 0.495 3.505 21 F -0.169 7.169 22 F -0.144 7.144 23 F -0.146 7.146 24 C 0.361 3.639 25 F -0.191 7.191 26 F -0.117 7.117 27 F -0.198 7.198 28 H 0.079 0.921 29 H 0.241 0.759 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 9.119 -14.127 -0.868 16.837 hybrid contribution 0.477 0.041 0.213 0.524 sum 9.596 -14.086 -0.655 17.056 Atomic orbital electron populations 1.70410 1.05853 1.27324 1.43607 1.25081 0.95161 1.00129 0.94015 0.86139 0.79804 0.81895 0.77880 1.19389 1.20543 1.20564 1.20905 0.93881 0.87913 1.56119 0.90271 1.19840 0.88667 0.85536 0.92072 0.89285 1.45914 1.17649 1.09717 1.60805 1.16909 0.85611 0.81557 0.79506 1.90874 1.19144 1.82245 1.45906 1.22137 0.92110 0.94634 1.02108 1.73754 1.08733 1.05544 1.20073 1.43341 1.14811 1.06610 1.44105 0.70051 1.22653 0.89148 0.98330 0.99282 1.20330 0.96203 0.96197 1.14472 1.16943 0.82884 0.74195 0.76465 1.93140 1.95593 1.35396 1.92737 1.93261 1.59760 1.95564 1.65848 1.93248 1.93718 1.76790 1.50811 1.23085 0.80870 0.72919 0.87049 1.92992 1.74389 1.96183 1.55495 1.93409 1.68329 1.53736 1.96188 1.93082 1.81461 1.48277 1.96964 0.92118 0.75950 0.78402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.96 9.50 55.43 0.53 -22.44 16 2 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.55 -14.09 8.47 -34.44 -0.29 -14.38 16 8 H 0.08 1.92 7.74 -52.49 -0.41 1.51 16 9 C 0.24 6.11 2.21 -69.09 -0.15 5.96 16 10 H 0.09 2.46 7.58 -51.93 -0.39 2.07 16 11 N -0.69 -14.72 4.98 -55.93 -0.28 -15.00 16 12 C 0.58 12.13 7.36 -12.39 -0.09 12.04 16 13 O -0.51 -12.06 13.06 5.31 0.07 -11.99 16 14 C 0.05 0.89 7.13 -82.76 -0.59 0.30 16 15 N -0.25 -3.30 11.92 33.42 0.40 -2.90 16 16 N -0.38 -3.14 6.83 30.47 0.21 -2.94 16 17 H 0.45 1.61 8.96 -190.44 -1.71 -0.10 16 18 C 0.05 0.46 11.48 -17.17 -0.20 0.27 16 19 C -0.26 -3.62 5.66 -104.40 -0.59 -4.21 16 20 C 0.55 8.38 2.85 36.01 0.10 8.48 16 21 F -0.19 -2.30 16.87 2.25 0.04 -2.27 16 22 F -0.16 -2.88 16.41 2.25 0.04 -2.85 16 23 F -0.16 -2.84 16.42 2.25 0.04 -2.80 16 24 C 0.42 10.80 2.81 37.15 0.10 10.91 16 25 F -0.21 -5.22 16.94 2.25 0.04 -5.18 16 26 F -0.14 -3.77 12.91 2.25 0.03 -3.74 16 27 F -0.22 -5.57 15.67 2.25 0.04 -5.54 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.41 7.76 8.27 -40.82 -0.34 7.42 16 30 H 0.20 0.80 8.02 -52.49 -0.42 0.38 16 LS Contribution 294.42 15.07 4.44 4.44 Total: -1.00 -32.43 294.42 -3.64 -36.08 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -2.40 Total: 1.10 kcal Atomic # 6 Polarization: 22.76 SS G_CDS: -1.80 Total: 20.96 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.85 Total: -43.28 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 9 Polarization: -22.58 SS G_CDS: 0.21 Total: -22.36 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.43 -3.64 -36.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799972.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.642 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds