Wall clock time and date at job start Tue Mar 31 2020 16:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00238 * 2 1 4 4 H 1.48503 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47338 * 299.99850 * 3 2 1 6 6 H 1.48499 * 109.47183 * 59.99760 * 3 2 1 7 7 C 1.37881 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99714 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00016 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46735 * 60.00220 * 9 7 2 11 11 N 1.46493 * 109.46943 * 180.02562 * 9 7 2 12 12 C 1.34782 * 120.00049 * 205.00163 * 11 9 7 13 13 O 1.21568 * 119.99473 * 0.02562 * 12 11 9 14 14 C 1.47706 * 119.99832 * 179.97438 * 12 11 9 15 15 N 1.31809 * 126.52538 * 0.02698 * 14 12 11 16 16 N 1.28466 * 110.07776 * 179.97438 * 15 14 12 17 17 H 0.97001 * 124.88210 * 179.97438 * 16 15 14 18 18 C 1.35032 * 110.22744 * 0.23353 * 16 15 14 19 19 C 1.35363 * 107.23257 * 359.62253 * 18 16 15 20 20 C 1.50703 * 127.24873 * 180.09565 * 19 18 16 21 21 F 1.39899 * 109.47214 * 0.31196 * 20 19 18 22 22 F 1.39903 * 109.47085 * 120.31374 * 20 19 18 23 23 F 1.39904 * 109.46833 * 240.31189 * 20 19 18 24 24 C 1.52994 * 109.47240 * 300.00308 * 9 7 2 25 25 F 1.39901 * 109.47352 * 299.99711 * 24 9 7 26 26 F 1.39902 * 109.47334 * 60.00135 * 24 9 7 27 27 F 1.39898 * 109.47132 * 180.02562 * 24 9 7 28 28 H 0.97004 * 120.00051 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00311 * 25.00456 * 11 9 7 30 30 H 1.08002 * 126.38063 * 179.73544 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6239 -2.5575 -0.8880 11 7 2.2028 -3.6127 0.0027 12 6 1.8367 -4.8128 -0.4896 13 8 0.7166 -4.9710 -0.9348 14 6 2.7967 -5.9353 -0.4890 15 7 4.0361 -5.9074 -0.0414 16 7 4.5862 -7.0582 -0.1941 17 1 5.4960 -7.2765 0.0619 18 6 3.7176 -7.9185 -0.7675 19 6 2.5604 -7.2456 -0.9685 20 6 1.2902 -7.7778 -1.5802 21 9 1.4659 -9.1225 -1.9240 22 9 0.2451 -7.6652 -0.6569 23 9 0.9803 -7.0398 -2.7277 24 6 0.3717 -2.5794 1.2512 25 9 1.1763 -2.5046 2.3932 26 9 -0.5374 -1.5160 1.2508 27 9 -0.3274 -3.7912 1.2526 28 1 -0.4850 0.8401 -0.0004 29 1 3.0967 -3.4864 0.3577 30 1 3.9097 -8.9515 -1.0172 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799972.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:16 Heat of formation + Delta-G solvation = -266.693868 kcal Electronic energy + Delta-G solvation = -29803.709278 eV Core-core repulsion = 24384.934117 eV Total energy + Delta-G solvation = -5418.775161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.99528 -50.42961 -48.54699 -48.46518 -48.06352 -47.73523 -43.98325 -40.44201 -36.58730 -34.55479 -33.67238 -32.57990 -30.27656 -27.16195 -26.63570 -25.52456 -23.26794 -22.37814 -21.46948 -20.28438 -19.36028 -19.33172 -19.07192 -18.86111 -18.68101 -18.33756 -17.81164 -17.49063 -16.99142 -16.78721 -16.07074 -15.39734 -15.38248 -15.33091 -15.07761 -14.97492 -14.90101 -14.74257 -14.65966 -14.62024 -14.47928 -14.33187 -14.26708 -14.04178 -13.88865 -13.45214 -13.07616 -12.76835 -12.65991 -12.24283 -12.22458 -11.57148 -11.31555 -10.82359 -10.70318 -10.67259 -10.12945 -8.21685 -6.52751 0.23446 0.61573 1.46760 1.47872 1.51950 1.61314 1.84966 2.08274 2.18582 2.39334 2.53470 2.74811 2.93714 3.05383 3.41605 3.50920 3.74946 3.80960 3.84816 3.98050 4.17742 4.39606 4.62081 4.88530 5.29964 5.50531 5.63359 5.89368 6.41658 6.51528 6.67516 7.09252 7.21947 8.71574 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019244 B = 0.004268 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.614142 B = 6559.089550 C = 7029.409065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.985 3.015 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.561 4.561 8 H 0.092 0.908 9 C 0.251 3.749 10 H 0.054 0.946 11 N -0.689 5.689 12 C 0.578 3.422 13 O -0.548 6.548 14 C 0.018 3.982 15 N -0.249 5.249 16 N -0.346 5.346 17 H 0.478 0.522 18 C 0.101 3.899 19 C -0.291 4.291 20 C 0.548 3.452 21 F -0.168 7.168 22 F -0.185 7.185 23 F -0.184 7.184 24 C 0.414 3.586 25 F -0.203 7.203 26 F -0.148 7.148 27 F -0.218 7.218 28 H 0.269 0.731 29 H 0.416 0.584 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.572 -16.257 -0.835 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.809 3.191 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.598 4.598 8 H 0.110 0.890 9 C 0.145 3.855 10 H 0.071 0.929 11 N -0.340 5.340 12 C 0.362 3.638 13 O -0.424 6.424 14 C -0.144 4.144 15 N -0.085 5.085 16 N -0.062 5.062 17 H 0.330 0.670 18 C -0.047 4.047 19 C -0.303 4.303 20 C 0.492 3.508 21 F -0.149 7.149 22 F -0.166 7.166 23 F -0.165 7.165 24 C 0.358 3.642 25 F -0.185 7.185 26 F -0.130 7.130 27 F -0.200 7.200 28 H 0.079 0.921 29 H 0.253 0.747 30 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 12.332 -15.517 -0.639 19.831 hybrid contribution -0.447 0.312 0.148 0.565 sum 11.884 -15.206 -0.491 19.305 Atomic orbital electron populations 1.70535 1.07497 1.28207 1.44543 1.26007 0.95918 1.03696 0.93363 0.85080 0.79089 0.77275 0.77688 1.17902 1.20209 1.20589 1.21223 0.94510 0.88144 1.55874 0.89027 1.19439 0.88833 0.87107 0.90156 0.92874 1.45752 1.17408 1.09368 1.61429 1.17481 0.86039 0.82137 0.78107 1.90837 1.21191 1.83024 1.47309 1.21452 0.92862 0.94263 1.05851 1.73652 1.07456 1.07778 1.19590 1.43463 1.15690 1.05069 1.41963 0.66989 1.23348 0.86437 0.99611 0.95294 1.20371 0.97418 0.95929 1.16586 1.17128 0.83054 0.74882 0.75712 1.93166 1.95435 1.33757 1.92542 1.93212 1.61068 1.95762 1.66573 1.93205 1.93961 1.77480 1.51849 1.23254 0.80831 0.72469 0.87652 1.92987 1.74131 1.96148 1.55199 1.93381 1.68877 1.54397 1.96298 1.93072 1.81594 1.48352 1.97011 0.92063 0.74741 0.72819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.92 9.50 21.45 0.20 -48.71 16 2 C 0.02 0.81 5.20 84.66 0.44 1.25 16 3 Si 0.99 40.85 29.54 68.60 2.03 42.88 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.56 -28.88 8.47 25.60 0.22 -28.66 16 8 H 0.09 4.38 7.74 -2.91 -0.02 4.35 16 9 C 0.25 13.01 2.21 44.25 0.10 13.10 16 10 H 0.05 3.13 7.58 -2.39 -0.02 3.11 16 11 N -0.69 -29.98 4.98 -449.12 -2.24 -32.22 16 12 C 0.58 24.73 7.36 86.74 0.64 25.37 16 13 O -0.55 -27.29 13.06 -3.93 -0.05 -27.34 16 14 C 0.02 0.57 7.13 42.46 0.30 0.87 16 15 N -0.25 -6.04 11.92 -48.18 -0.57 -6.61 16 16 N -0.35 -4.21 6.83 -57.51 -0.39 -4.60 16 17 H 0.48 0.79 8.96 -219.99 -1.97 -1.19 16 18 C 0.10 1.27 11.48 83.54 0.96 2.23 16 19 C -0.29 -7.55 5.66 -19.72 -0.11 -7.66 16 20 C 0.55 16.37 2.85 71.24 0.20 16.57 16 21 F -0.17 -3.76 16.87 44.97 0.76 -3.00 16 22 F -0.18 -6.68 16.41 44.97 0.74 -5.94 16 23 F -0.18 -6.48 16.42 44.97 0.74 -5.75 16 24 C 0.41 22.09 2.81 71.98 0.20 22.30 16 25 F -0.20 -10.23 16.94 44.97 0.76 -9.47 16 26 F -0.15 -8.52 12.91 44.97 0.58 -7.94 16 27 F -0.22 -11.69 15.67 44.97 0.70 -10.98 16 28 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.42 15.93 8.27 -92.71 -0.77 15.16 16 30 H 0.26 0.22 8.02 -2.91 -0.02 0.20 16 Total: -1.00 -74.61 294.42 4.75 -69.86 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -1.45 Total: 4.47 kcal Atomic # 6 Polarization: 42.42 SS G_CDS: 2.95 Total: 45.37 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -3.00 Total: -92.15 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 9 Polarization: -47.37 SS G_CDS: 4.28 Total: -43.09 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -74.61 4.75 -69.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799972.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.834 kcal (2) G-P(sol) polarization free energy of solvation -74.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds