Wall clock time and date at job start Tue Mar 31 2020 16:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99691 * 2 1 4 4 H 1.48504 * 109.46736 * 264.80692 * 3 2 1 5 5 H 1.48499 * 109.47135 * 24.80628 * 3 2 1 6 6 H 1.48497 * 109.47106 * 144.80554 * 3 2 1 7 7 C 1.37870 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99792 * 4.87536 * 7 2 1 9 9 C 1.50695 * 120.00293 * 184.88121 * 7 2 1 10 10 H 1.08997 * 109.47234 * 334.94178 * 9 7 2 11 11 N 1.46505 * 109.47315 * 94.94124 * 9 7 2 12 12 C 1.34777 * 119.99906 * 205.00239 * 11 9 7 13 13 O 1.21631 * 120.00090 * 359.97438 * 12 11 9 14 14 C 1.47166 * 119.99750 * 180.02562 * 12 11 9 15 15 C 1.38401 * 126.88468 * 179.97438 * 14 12 11 16 16 C 1.39671 * 105.36135 * 180.02562 * 15 14 12 17 17 C 1.50699 * 126.06996 * 180.26171 * 16 15 14 18 18 F 1.39897 * 109.47159 * 184.71721 * 17 16 15 19 19 F 1.39904 * 109.47057 * 304.71619 * 17 16 15 20 20 F 1.39902 * 109.47185 * 64.71522 * 17 16 15 21 21 N 1.30861 * 107.85863 * 359.97438 * 16 15 14 22 22 N 1.28443 * 110.92908 * 359.97438 * 21 16 15 23 23 H 0.97006 * 125.18759 * 180.02562 * 22 21 16 24 24 C 1.53000 * 109.47394 * 214.94006 * 9 7 2 25 25 F 1.39900 * 109.47401 * 294.94039 * 24 9 7 26 26 F 1.39900 * 109.46796 * 54.93449 * 24 9 7 27 27 F 1.39899 * 109.47613 * 174.93769 * 24 9 7 28 28 H 0.97000 * 120.00356 * 0.02562 * 1 2 3 29 29 H 0.96995 * 119.99605 * 25.00384 * 11 9 7 30 30 H 1.08007 * 127.31834 * 0.03570 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6063 1.9831 -1.3944 5 1 1.3959 2.6819 0.5874 6 1 3.4874 1.4745 0.8069 7 6 2.0046 -1.1939 0.0005 8 1 1.4675 -2.1276 -0.0785 9 6 3.5074 -1.1962 0.1116 10 1 3.9004 -0.2483 -0.2561 11 7 3.8933 -1.3738 1.5137 12 6 5.0873 -0.9225 1.9464 13 8 5.8447 -0.3683 1.1727 14 6 5.4751 -1.1014 3.3547 15 6 6.6582 -0.6971 3.9483 16 6 6.5545 -1.0895 5.2848 17 6 7.5910 -0.8708 6.3566 18 9 7.1779 -1.4943 7.5389 19 9 8.8113 -1.4164 5.9435 20 9 7.7461 0.5011 6.5824 21 7 5.3949 -1.6751 5.4423 22 7 4.7391 -1.6989 4.3381 23 1 3.8562 -2.0831 4.2205 24 6 4.0789 -2.3436 -0.7238 25 9 3.6671 -3.5656 -0.1812 26 9 3.6157 -2.2380 -2.0397 27 9 5.4762 -2.2765 -0.7144 28 1 -0.4851 0.8400 -0.0004 29 1 3.2894 -1.8161 2.1306 30 1 7.4857 -0.1867 3.4780 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:02 Heat of formation + Delta-G solvation = -270.722214 kcal Electronic energy + Delta-G solvation = -28771.527311 eV Core-core repulsion = 23352.577468 eV Total energy + Delta-G solvation = -5418.949843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.27682 -49.23379 -47.80115 -47.77538 -46.76143 -46.70537 -42.99293 -39.14286 -35.18353 -33.15851 -32.58830 -31.39817 -29.28384 -26.77734 -25.16383 -23.95124 -21.74242 -21.48626 -20.64282 -19.42479 -18.68325 -18.53188 -17.89658 -17.75710 -17.61541 -17.01664 -16.73088 -16.00523 -15.64442 -15.56557 -14.63705 -14.59856 -14.32850 -14.20170 -14.11277 -13.99255 -13.91983 -13.88185 -13.70300 -13.61863 -13.25072 -13.17116 -12.92146 -12.87884 -12.78664 -12.55466 -12.03006 -11.50031 -11.32177 -10.95241 -10.33763 -10.08678 -10.07207 -9.98441 -9.47980 -9.17799 -8.80641 -6.73262 -4.91035 1.02219 1.74781 2.03788 2.66509 2.94557 3.06274 3.12966 3.17033 3.23064 3.48623 3.74004 3.80374 3.92100 4.22912 4.51183 4.65044 4.68765 4.96279 4.97662 5.09018 5.19320 5.34541 5.85998 6.02996 6.42545 6.65012 6.71007 7.33148 7.58439 7.89924 8.28241 8.34261 8.81125 10.34373 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.003817 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.905423 B = 7332.984114 C = 8023.226407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.102 3.898 3 Si 0.866 3.134 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.540 4.540 8 H 0.096 0.904 9 C 0.202 3.798 10 H 0.095 0.905 11 N -0.705 5.705 12 C 0.573 3.427 13 O -0.514 6.514 14 C -0.012 4.012 15 C -0.117 4.117 16 C -0.075 4.075 17 C 0.563 3.437 18 F -0.168 7.168 19 F -0.168 7.168 20 F -0.168 7.168 21 N -0.215 5.215 22 N -0.352 5.352 23 H 0.456 0.544 24 C 0.439 3.561 25 F -0.192 7.192 26 F -0.178 7.178 27 F -0.194 7.194 28 H 0.278 0.722 29 H 0.395 0.605 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.417 -1.826 9.289 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.110 4.110 3 Si 0.690 3.310 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.577 4.577 8 H 0.114 0.886 9 C 0.100 3.900 10 H 0.113 0.887 11 N -0.357 5.357 12 C 0.356 3.644 13 O -0.388 6.388 14 C -0.141 4.141 15 C -0.145 4.145 16 C -0.233 4.233 17 C 0.507 3.493 18 F -0.149 7.149 19 F -0.149 7.149 20 F -0.150 7.150 21 N -0.051 5.051 22 N -0.072 5.072 23 H 0.304 0.696 24 C 0.383 3.617 25 F -0.174 7.174 26 F -0.160 7.160 27 F -0.176 7.176 28 H 0.089 0.911 29 H 0.231 0.769 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.148 -1.827 9.456 13.283 hybrid contribution 0.222 0.602 -0.302 0.709 sum 9.370 -1.225 9.153 13.156 Atomic orbital electron populations 1.69840 1.06450 1.28757 1.43263 1.25019 0.94850 0.99372 0.91752 0.86959 0.80792 0.82760 0.80453 1.18663 1.20268 1.17851 1.20721 0.86010 0.96609 1.54336 0.88589 1.20115 0.98151 0.92636 0.79118 0.88718 1.47621 1.16484 1.58608 1.13025 1.17289 0.82929 0.80036 0.84182 1.90848 1.51402 1.42328 1.54233 1.22243 0.94521 1.05116 0.92190 1.21855 0.98573 1.02879 0.91187 1.21616 0.96124 1.10356 0.95175 1.16701 0.79142 0.74256 0.79244 1.93225 1.90128 1.82474 1.49070 1.93240 1.45691 1.85716 1.90239 1.93244 1.95796 1.31055 1.94859 1.73040 1.05257 1.17347 1.09504 1.43795 1.17320 1.41614 1.04465 0.69608 1.21600 0.74978 0.85011 0.80098 1.93075 1.90272 1.48108 1.85895 1.93124 1.88675 1.96155 1.38011 1.93158 1.31378 1.96513 1.96546 0.91133 0.76881 0.80484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.87 13.96 55.43 0.77 -21.09 16 2 C 0.10 2.46 5.47 -17.82 -0.10 2.36 16 3 Si 0.87 18.69 26.99 -169.99 -4.59 14.10 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.25 -5.51 6.82 56.52 0.39 -5.12 16 7 C -0.54 -12.59 8.52 -34.45 -0.29 -12.88 16 8 H 0.10 2.43 8.00 -52.48 -0.42 2.01 16 9 C 0.20 4.23 1.71 -69.08 -0.12 4.11 16 10 H 0.10 2.11 4.73 -51.93 -0.25 1.86 16 11 N -0.71 -12.44 4.90 -56.09 -0.28 -12.72 16 12 C 0.57 10.06 7.46 -12.64 -0.09 9.96 16 13 O -0.51 -10.59 15.49 5.25 0.08 -10.51 16 14 C -0.01 -0.18 7.16 -82.06 -0.59 -0.77 16 15 C -0.12 -1.57 10.78 -38.99 -0.42 -1.99 16 16 C -0.07 -0.96 6.50 -82.47 -0.54 -1.50 16 17 C 0.56 6.59 3.51 36.00 0.13 6.71 16 18 F -0.17 -2.01 17.14 2.25 0.04 -1.97 16 19 F -0.17 -1.91 17.30 2.25 0.04 -1.87 16 20 F -0.17 -1.96 17.30 2.25 0.04 -1.92 16 21 N -0.21 -2.77 11.93 33.64 0.40 -2.37 16 22 N -0.35 -4.18 6.85 33.48 0.23 -3.95 16 23 H 0.46 4.01 8.22 -190.45 -1.57 2.44 16 24 C 0.44 9.00 2.83 37.16 0.11 9.11 16 25 F -0.19 -3.76 16.93 2.25 0.04 -3.73 16 26 F -0.18 -3.77 16.89 2.25 0.04 -3.74 16 27 F -0.19 -3.97 15.83 2.25 0.04 -3.93 16 28 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.40 5.85 7.78 -40.82 -0.32 5.53 16 30 H 0.18 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 301.58 15.07 4.54 4.54 Total: -1.00 -27.40 301.58 -2.64 -30.04 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -2.12 Total: 4.01 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: -1.92 Total: 15.11 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 1.13 Total: -40.13 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 9 Polarization: -17.39 SS G_CDS: 0.23 Total: -17.16 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.59 Total: 14.10 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.40 -2.64 -30.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -240.680 kcal (2) G-P(sol) polarization free energy of solvation -27.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds