Wall clock time and date at job start Tue Mar 31 2020 16:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99691 * 2 1 4 4 H 1.48504 * 109.46736 * 264.80692 * 3 2 1 5 5 H 1.48499 * 109.47135 * 24.80628 * 3 2 1 6 6 H 1.48497 * 109.47106 * 144.80554 * 3 2 1 7 7 C 1.37870 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99792 * 4.87536 * 7 2 1 9 9 C 1.50695 * 120.00293 * 184.88121 * 7 2 1 10 10 H 1.08997 * 109.47234 * 334.94178 * 9 7 2 11 11 N 1.46505 * 109.47315 * 94.94124 * 9 7 2 12 12 C 1.34777 * 119.99906 * 205.00239 * 11 9 7 13 13 O 1.21631 * 120.00090 * 359.97438 * 12 11 9 14 14 C 1.47166 * 119.99750 * 180.02562 * 12 11 9 15 15 C 1.38401 * 126.88468 * 179.97438 * 14 12 11 16 16 C 1.39671 * 105.36135 * 180.02562 * 15 14 12 17 17 C 1.50699 * 126.06996 * 180.26171 * 16 15 14 18 18 F 1.39897 * 109.47159 * 184.71721 * 17 16 15 19 19 F 1.39904 * 109.47057 * 304.71619 * 17 16 15 20 20 F 1.39902 * 109.47185 * 64.71522 * 17 16 15 21 21 N 1.30861 * 107.85863 * 359.97438 * 16 15 14 22 22 N 1.28443 * 110.92908 * 359.97438 * 21 16 15 23 23 H 0.97006 * 125.18759 * 180.02562 * 22 21 16 24 24 C 1.53000 * 109.47394 * 214.94006 * 9 7 2 25 25 F 1.39900 * 109.47401 * 294.94039 * 24 9 7 26 26 F 1.39900 * 109.46796 * 54.93449 * 24 9 7 27 27 F 1.39899 * 109.47613 * 174.93769 * 24 9 7 28 28 H 0.97000 * 120.00356 * 0.02562 * 1 2 3 29 29 H 0.96995 * 119.99605 * 25.00384 * 11 9 7 30 30 H 1.08007 * 127.31834 * 0.03570 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6063 1.9831 -1.3944 5 1 1.3959 2.6819 0.5874 6 1 3.4874 1.4745 0.8069 7 6 2.0046 -1.1939 0.0005 8 1 1.4675 -2.1276 -0.0785 9 6 3.5074 -1.1962 0.1116 10 1 3.9004 -0.2483 -0.2561 11 7 3.8933 -1.3738 1.5137 12 6 5.0873 -0.9225 1.9464 13 8 5.8447 -0.3683 1.1727 14 6 5.4751 -1.1014 3.3547 15 6 6.6582 -0.6971 3.9483 16 6 6.5545 -1.0895 5.2848 17 6 7.5910 -0.8708 6.3566 18 9 7.1779 -1.4943 7.5389 19 9 8.8113 -1.4164 5.9435 20 9 7.7461 0.5011 6.5824 21 7 5.3949 -1.6751 5.4423 22 7 4.7391 -1.6989 4.3381 23 1 3.8562 -2.0831 4.2205 24 6 4.0789 -2.3436 -0.7238 25 9 3.6671 -3.5656 -0.1812 26 9 3.6157 -2.2380 -2.0397 27 9 5.4762 -2.2765 -0.7144 28 1 -0.4851 0.8400 -0.0004 29 1 3.2894 -1.8161 2.1306 30 1 7.4857 -0.1867 3.4780 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803110.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:01 Heat of formation + Delta-G solvation = -289.181818 kcal Electronic energy + Delta-G solvation = -28772.327780 eV Core-core repulsion = 23352.577468 eV Total energy + Delta-G solvation = -5419.750311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.19898 -50.89952 -48.71354 -48.70288 -48.40902 -48.38595 -44.05455 -40.61993 -36.80940 -34.72563 -33.84318 -32.62400 -30.83510 -27.75004 -26.94613 -25.26767 -23.06924 -22.67804 -21.96104 -20.84850 -19.70074 -19.60358 -19.38632 -19.28450 -18.70119 -18.57977 -18.46904 -17.24457 -17.04417 -16.93677 -15.95925 -15.63868 -15.49683 -15.43908 -15.33731 -15.27576 -15.11818 -15.01139 -14.91368 -14.83785 -14.83717 -14.81837 -14.58585 -14.53043 -14.49806 -13.77702 -13.55101 -13.08424 -12.67151 -12.54839 -12.02912 -11.89824 -11.50519 -11.09687 -11.02370 -10.63819 -10.31869 -8.59415 -6.79686 -0.13380 0.70172 1.08038 1.23972 1.33753 1.39681 1.57418 1.77667 1.87610 2.12402 2.14545 2.49949 2.79079 2.88476 3.17758 3.29669 3.30440 3.37829 3.59734 3.68579 3.98796 4.16414 4.35351 4.82658 4.86498 5.14485 5.49644 5.81747 6.28341 6.40529 6.44013 6.90279 6.95248 8.52101 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.003817 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.905423 B = 7332.984114 C = 8023.226407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.210 3.790 10 H 0.086 0.914 11 N -0.702 5.702 12 C 0.579 3.421 13 O -0.545 6.545 14 C -0.026 4.026 15 C -0.109 4.109 16 C -0.081 4.081 17 C 0.570 3.430 18 F -0.168 7.168 19 F -0.165 7.165 20 F -0.167 7.167 21 N -0.211 5.211 22 N -0.335 5.335 23 H 0.469 0.531 24 C 0.440 3.560 25 F -0.186 7.186 26 F -0.183 7.183 27 F -0.192 7.192 28 H 0.281 0.719 29 H 0.411 0.589 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.493 -1.671 10.428 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.105 3.895 10 H 0.103 0.897 11 N -0.354 5.354 12 C 0.364 3.636 13 O -0.421 6.421 14 C -0.155 4.155 15 C -0.138 4.138 16 C -0.238 4.238 17 C 0.514 3.486 18 F -0.149 7.149 19 F -0.146 7.146 20 F -0.148 7.148 21 N -0.048 5.048 22 N -0.057 5.057 23 H 0.319 0.681 24 C 0.384 3.616 25 F -0.167 7.167 26 F -0.165 7.165 27 F -0.173 7.173 28 H 0.091 0.909 29 H 0.249 0.751 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.214 -1.693 10.621 14.832 hybrid contribution -0.054 0.464 -0.608 0.767 sum 10.160 -1.229 10.013 14.317 Atomic orbital electron populations 1.69908 1.07657 1.29555 1.45429 1.25522 0.95201 1.01676 0.91594 0.86227 0.79727 0.80126 0.80298 1.18688 1.19743 1.17834 1.20634 0.87053 0.95529 1.54222 0.91075 1.19828 0.96624 0.92536 0.80466 0.89652 1.47072 1.17290 1.59044 1.12042 1.17419 0.82066 0.78921 0.85210 1.90835 1.52163 1.43579 1.55485 1.21672 0.95535 1.07261 0.90984 1.22073 0.98417 1.01927 0.91360 1.21752 0.96366 1.10397 0.95297 1.16521 0.78921 0.74281 0.78899 1.93227 1.90158 1.82509 1.49054 1.93250 1.45455 1.85688 1.90201 1.93251 1.95767 1.30958 1.94820 1.73051 1.05344 1.16950 1.09484 1.43816 1.17602 1.40720 1.03586 0.68076 1.21510 0.75065 0.85154 0.79831 1.93086 1.90225 1.47672 1.85764 1.93115 1.88758 1.96198 1.38407 1.93164 1.31110 1.96523 1.96516 0.90857 0.75122 0.79363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.06 13.96 21.44 0.30 -45.76 16 2 C 0.07 3.27 5.47 84.65 0.46 3.73 16 3 Si 0.91 37.99 26.99 68.60 1.85 39.84 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.25 -10.49 6.82 99.48 0.68 -9.81 16 7 C -0.54 -24.98 8.52 25.60 0.22 -24.76 16 8 H 0.07 3.64 8.00 -2.91 -0.02 3.62 16 9 C 0.21 8.58 1.71 44.24 0.08 8.66 16 10 H 0.09 3.71 4.73 -2.39 -0.01 3.70 16 11 N -0.70 -23.77 4.90 -449.62 -2.21 -25.98 16 12 C 0.58 19.35 7.46 86.59 0.65 19.99 16 13 O -0.54 -21.65 15.49 -4.13 -0.06 -21.71 16 14 C -0.03 -0.70 7.16 40.79 0.29 -0.41 16 15 C -0.11 -2.70 10.78 22.65 0.24 -2.45 16 16 C -0.08 -1.89 6.50 43.05 0.28 -1.61 16 17 C 0.57 12.05 3.51 71.24 0.25 12.30 16 18 F -0.17 -3.66 17.14 44.97 0.77 -2.89 16 19 F -0.16 -3.40 17.30 44.97 0.78 -2.62 16 20 F -0.17 -3.51 17.30 44.97 0.78 -2.74 16 21 N -0.21 -4.89 11.93 -47.50 -0.57 -5.46 16 22 N -0.34 -7.14 6.85 -48.00 -0.33 -7.47 16 23 H 0.47 7.10 8.22 -220.00 -1.81 5.29 16 24 C 0.44 17.66 2.83 71.98 0.20 17.86 16 25 F -0.19 -7.09 16.93 44.97 0.76 -6.33 16 26 F -0.18 -7.66 16.89 44.97 0.76 -6.90 16 27 F -0.19 -7.59 15.83 44.97 0.71 -6.88 16 28 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.41 11.50 7.78 -92.71 -0.72 10.78 16 30 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -56.53 301.58 4.95 -51.58 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -1.27 Total: 10.00 kcal Atomic # 6 Polarization: 30.63 SS G_CDS: 2.67 Total: 33.30 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -2.80 Total: -84.67 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.06 Total: -21.71 kcal Atomic # 9 Polarization: -32.91 SS G_CDS: 4.56 Total: -28.35 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.85 Total: 39.84 kcal Total: -56.53 4.95 -51.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803110.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.600 kcal (2) G-P(sol) polarization free energy of solvation -56.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -294.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds