Wall clock time and date at job start Tue Mar 31 2020 16:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48494 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46821 * 300.00021 * 3 2 1 6 6 H 1.48501 * 109.47152 * 59.99742 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 299.99553 * 9 7 2 11 11 N 1.46500 * 109.46896 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99783 * 154.99772 * 11 9 7 13 13 O 1.21622 * 120.00355 * 359.97438 * 12 11 9 14 14 C 1.47162 * 119.99629 * 180.02562 * 12 11 9 15 15 C 1.38411 * 126.88449 * 180.02562 * 14 12 11 16 16 C 1.39672 * 105.36203 * 180.02562 * 15 14 12 17 17 C 1.50697 * 126.06653 * 179.97438 * 16 15 14 18 18 F 1.39898 * 109.47083 * 90.00075 * 17 16 15 19 19 F 1.39904 * 109.46747 * 209.99605 * 17 16 15 20 20 F 1.39896 * 109.47424 * 329.99320 * 17 16 15 21 21 N 1.30861 * 107.86157 * 359.97438 * 16 15 14 22 22 N 1.28454 * 110.92865 * 359.71589 * 21 16 15 23 23 H 0.96999 * 125.18976 * 180.28229 * 22 21 16 24 24 C 1.52997 * 109.47466 * 59.99800 * 9 7 2 25 25 F 1.39905 * 109.47157 * 59.99756 * 24 9 7 26 26 F 1.39900 * 109.47010 * 300.00147 * 24 9 7 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 9 7 28 28 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00274 * 335.00063 * 11 9 7 30 30 H 1.08005 * 127.31518 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8122 0.4939 13 8 0.7166 -4.9703 0.9395 14 6 2.7937 -5.9305 0.4944 15 6 2.5709 -7.2141 0.9619 16 6 3.7687 -7.8994 0.7466 17 6 4.0394 -9.3419 1.0887 18 9 3.7008 -10.1510 -0.0012 19 9 5.3970 -9.5038 1.3856 20 9 3.2721 -9.7098 2.1990 21 7 4.6142 -7.0665 0.1952 22 7 4.0774 -5.9116 0.0279 23 1 4.5176 -5.1425 -0.3666 24 6 0.3720 -2.5805 -1.2490 25 9 1.1766 -2.5066 -2.3910 26 9 -0.5372 -1.5172 -1.2495 27 9 -0.3271 -3.7923 -1.2492 28 1 -0.4850 0.8400 -0.0004 29 1 3.0970 -3.4864 -0.3545 30 1 1.6638 -7.6028 1.4008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803111.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:04 Heat of formation + Delta-G solvation = -247.398746 kcal Electronic energy + Delta-G solvation = -28736.684174 eV Core-core repulsion = 23318.745712 eV Total energy + Delta-G solvation = -5417.938461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.28632 -48.53360 -47.81908 -47.77695 -46.18950 -45.78879 -43.01077 -39.09588 -35.07141 -33.18504 -32.55507 -31.32834 -28.65226 -26.78890 -24.80863 -23.91501 -21.76887 -21.55008 -20.59090 -19.38930 -18.68624 -18.49347 -17.67357 -17.19253 -17.05595 -16.83521 -16.27718 -15.98871 -15.54509 -15.10127 -14.71019 -14.64600 -14.49506 -14.21077 -14.02731 -13.99450 -13.92904 -13.84751 -13.40033 -13.10820 -12.75789 -12.59506 -12.55596 -12.46223 -12.18222 -11.99576 -11.51694 -11.33931 -11.04135 -11.00021 -10.59188 -10.09927 -9.89235 -9.87288 -9.48741 -8.92842 -8.62449 -6.40848 -4.66803 1.00986 1.73885 2.01768 2.65082 3.07150 3.12924 3.17230 3.22966 3.28610 3.48428 3.79009 4.06052 4.22424 4.35514 4.56769 4.68593 4.76447 5.09214 5.23003 5.61891 5.66121 5.86577 5.97588 6.38717 6.63964 6.76520 7.19514 7.32272 7.44401 7.87053 8.23395 8.40629 9.02160 10.50732 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.023602 B = 0.003184 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.057335 B = 8791.804543 C = 9313.549790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.067 3.933 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.245 3.755 10 H 0.092 0.908 11 N -0.704 5.704 12 C 0.579 3.421 13 O -0.504 6.504 14 C -0.010 4.010 15 C -0.115 4.115 16 C -0.073 4.073 17 C 0.563 3.437 18 F -0.170 7.170 19 F -0.169 7.169 20 F -0.165 7.165 21 N -0.216 5.216 22 N -0.354 5.354 23 H 0.455 0.545 24 C 0.417 3.583 25 F -0.208 7.208 26 F -0.134 7.134 27 F -0.217 7.217 28 H 0.270 0.730 29 H 0.394 0.606 30 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.647 -11.231 0.599 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.143 4.143 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.594 4.594 8 H 0.097 0.903 9 C 0.140 3.860 10 H 0.109 0.891 11 N -0.353 5.353 12 C 0.362 3.638 13 O -0.377 6.377 14 C -0.138 4.138 15 C -0.143 4.143 16 C -0.231 4.231 17 C 0.507 3.493 18 F -0.151 7.151 19 F -0.150 7.150 20 F -0.147 7.147 21 N -0.053 5.053 22 N -0.073 5.073 23 H 0.302 0.698 24 C 0.360 3.640 25 F -0.190 7.190 26 F -0.115 7.115 27 F -0.199 7.199 28 H 0.081 0.919 29 H 0.228 0.772 30 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.631 -11.149 0.527 13.521 hybrid contribution 0.182 1.078 -0.432 1.175 sum 7.813 -10.072 0.095 12.747 Atomic orbital electron populations 1.70389 1.05896 1.27623 1.42952 1.25079 0.95189 1.00235 0.93794 0.86119 0.79707 0.81735 0.78063 1.19395 1.20440 1.20417 1.20855 0.93787 0.87846 1.56888 0.90291 1.19882 0.88531 0.85293 0.92254 0.89081 1.46009 1.17278 1.10455 1.61566 1.16923 0.86070 0.81347 0.79471 1.90885 1.19100 1.82060 1.45651 1.22153 0.87052 0.97984 1.06648 1.21885 0.98877 0.90820 1.02728 1.21622 0.94957 0.95126 1.11441 1.16689 0.74256 0.83771 0.74579 1.93245 1.92129 1.75049 1.54666 1.93229 1.32431 1.96149 1.93204 1.93231 1.75599 1.92389 1.53441 1.73019 1.24489 0.92042 1.15736 1.43783 1.09677 1.10288 1.43574 0.69757 1.23091 0.80923 0.72976 0.86967 1.92998 1.74357 1.96189 1.55497 1.93420 1.68256 1.53646 1.96165 1.93081 1.81503 1.48309 1.96960 0.91897 0.77200 0.80297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.55 9.50 55.43 0.53 -21.02 16 2 C 0.07 1.62 5.20 -17.82 -0.09 1.52 16 3 Si 0.92 18.84 29.54 -169.99 -5.02 13.82 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.56 -12.98 8.46 -34.44 -0.29 -13.27 16 8 H 0.08 1.71 7.74 -52.49 -0.41 1.30 16 9 C 0.25 5.52 2.21 -69.09 -0.15 5.37 16 10 H 0.09 2.30 7.58 -51.93 -0.39 1.90 16 11 N -0.70 -12.46 4.98 -56.10 -0.28 -12.74 16 12 C 0.58 10.16 7.34 -12.64 -0.09 10.07 16 13 O -0.50 -10.66 15.49 5.26 0.08 -10.58 16 14 C -0.01 -0.14 7.16 -82.06 -0.59 -0.73 16 15 C -0.11 -1.51 10.48 -38.98 -0.41 -1.92 16 16 C -0.07 -0.92 6.56 -82.47 -0.54 -1.46 16 17 C 0.56 6.44 3.55 36.00 0.13 6.57 16 18 F -0.17 -1.96 17.30 2.25 0.04 -1.92 16 19 F -0.17 -1.97 17.26 2.25 0.04 -1.93 16 20 F -0.17 -1.82 17.04 2.25 0.04 -1.78 16 21 N -0.22 -2.69 12.08 33.64 0.41 -2.28 16 22 N -0.35 -3.99 6.85 33.48 0.23 -3.76 16 23 H 0.46 3.64 8.22 -190.45 -1.57 2.07 16 24 C 0.42 9.90 2.81 37.16 0.10 10.00 16 25 F -0.21 -4.74 16.94 2.25 0.04 -4.71 16 26 F -0.13 -3.49 12.91 2.25 0.03 -3.46 16 27 F -0.22 -5.11 15.67 2.25 0.04 -5.08 16 28 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.39 5.60 7.72 -40.82 -0.32 5.28 16 30 H 0.18 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 298.28 15.07 4.49 4.49 Total: -1.00 -28.41 298.28 -3.51 -31.93 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -2.24 Total: 2.86 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: -1.93 Total: 16.15 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.88 Total: -39.80 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 9 Polarization: -19.09 SS G_CDS: 0.22 Total: -18.87 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.41 -3.51 -31.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803111.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.473 kcal (2) G-P(sol) polarization free energy of solvation -28.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds