Wall clock time and date at job start Tue Mar 31 2020 16:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48494 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46821 * 300.00021 * 3 2 1 6 6 H 1.48501 * 109.47152 * 59.99742 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 299.99553 * 9 7 2 11 11 N 1.46500 * 109.46896 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99783 * 154.99772 * 11 9 7 13 13 O 1.21622 * 120.00355 * 359.97438 * 12 11 9 14 14 C 1.47162 * 119.99629 * 180.02562 * 12 11 9 15 15 C 1.38411 * 126.88449 * 180.02562 * 14 12 11 16 16 C 1.39672 * 105.36203 * 180.02562 * 15 14 12 17 17 C 1.50697 * 126.06653 * 179.97438 * 16 15 14 18 18 F 1.39898 * 109.47083 * 90.00075 * 17 16 15 19 19 F 1.39904 * 109.46747 * 209.99605 * 17 16 15 20 20 F 1.39896 * 109.47424 * 329.99320 * 17 16 15 21 21 N 1.30861 * 107.86157 * 359.97438 * 16 15 14 22 22 N 1.28454 * 110.92865 * 359.71589 * 21 16 15 23 23 H 0.96999 * 125.18976 * 180.28229 * 22 21 16 24 24 C 1.52997 * 109.47466 * 59.99800 * 9 7 2 25 25 F 1.39905 * 109.47157 * 59.99756 * 24 9 7 26 26 F 1.39900 * 109.47010 * 300.00147 * 24 9 7 27 27 F 1.39897 * 109.47422 * 179.97438 * 24 9 7 28 28 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00274 * 335.00063 * 11 9 7 30 30 H 1.08005 * 127.31518 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8122 0.4939 13 8 0.7166 -4.9703 0.9395 14 6 2.7937 -5.9305 0.4944 15 6 2.5709 -7.2141 0.9619 16 6 3.7687 -7.8994 0.7466 17 6 4.0394 -9.3419 1.0887 18 9 3.7008 -10.1510 -0.0012 19 9 5.3970 -9.5038 1.3856 20 9 3.2721 -9.7098 2.1990 21 7 4.6142 -7.0665 0.1952 22 7 4.0774 -5.9116 0.0279 23 1 4.5176 -5.1425 -0.3666 24 6 0.3720 -2.5805 -1.2490 25 9 1.1766 -2.5066 -2.3910 26 9 -0.5372 -1.5172 -1.2495 27 9 -0.3271 -3.7923 -1.2492 28 1 -0.4850 0.8400 -0.0004 29 1 3.0970 -3.4864 -0.3545 30 1 1.6638 -7.6028 1.4008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803111.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:04 Heat of formation + Delta-G solvation = -266.354565 kcal Electronic energy + Delta-G solvation = -28737.506160 eV Core-core repulsion = 23318.745712 eV Total energy + Delta-G solvation = -5418.760447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.19201 -50.44416 -48.71483 -48.68858 -48.07891 -47.75088 -44.04950 -40.57917 -36.71686 -34.71630 -33.78470 -32.51534 -30.30210 -27.74553 -26.65491 -25.29208 -23.20056 -22.66670 -21.94363 -20.73967 -19.59389 -19.47476 -18.97398 -18.90529 -18.69214 -18.58811 -17.91733 -17.13757 -16.94369 -16.75893 -16.13134 -15.63186 -15.48186 -15.41476 -15.11526 -15.05952 -15.00601 -14.95905 -14.83094 -14.79095 -14.56258 -14.47708 -14.32144 -14.06712 -13.92905 -13.57244 -13.11433 -12.81681 -12.69315 -12.52504 -12.23422 -11.60783 -11.39479 -11.08686 -10.73385 -10.61661 -10.24908 -8.24122 -6.55228 -0.12617 0.70883 1.08689 1.46415 1.48450 1.58190 1.62543 1.88657 1.94484 2.35814 2.48570 2.52113 2.82670 2.92466 3.31270 3.38536 3.65693 3.74415 3.80546 3.98075 4.12298 4.20802 4.81419 4.85282 5.13502 5.42081 5.54307 5.61339 6.28893 6.42857 6.50625 6.94457 7.18207 8.68571 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.023602 B = 0.003184 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.057335 B = 8791.804543 C = 9313.549790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.018 3.982 3 Si 0.981 3.019 4 H -0.254 1.254 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.561 4.561 8 H 0.098 0.902 9 C 0.252 3.748 10 H 0.059 0.941 11 N -0.695 5.695 12 C 0.584 3.416 13 O -0.545 6.545 14 C -0.022 4.022 15 C -0.109 4.109 16 C -0.080 4.080 17 C 0.570 3.430 18 F -0.169 7.169 19 F -0.169 7.169 20 F -0.162 7.162 21 N -0.210 5.210 22 N -0.333 5.333 23 H 0.469 0.531 24 C 0.413 3.587 25 F -0.202 7.202 26 F -0.149 7.149 27 F -0.218 7.218 28 H 0.269 0.731 29 H 0.413 0.587 30 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.694 -11.515 0.410 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.188 4.188 3 Si 0.805 3.195 4 H -0.177 1.177 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.598 4.598 8 H 0.115 0.885 9 C 0.145 3.855 10 H 0.076 0.924 11 N -0.346 5.346 12 C 0.369 3.631 13 O -0.420 6.420 14 C -0.150 4.150 15 C -0.138 4.138 16 C -0.237 4.237 17 C 0.514 3.486 18 F -0.151 7.151 19 F -0.150 7.150 20 F -0.143 7.143 21 N -0.047 5.047 22 N -0.055 5.055 23 H 0.320 0.680 24 C 0.356 3.644 25 F -0.184 7.184 26 F -0.131 7.131 27 F -0.200 7.200 28 H 0.079 0.921 29 H 0.250 0.750 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.736 -11.448 0.324 15.031 hybrid contribution -0.443 1.085 -0.383 1.232 sum 9.293 -10.363 -0.059 13.920 Atomic orbital electron populations 1.70516 1.07462 1.28226 1.44361 1.25944 0.95830 1.03585 0.93439 0.85136 0.79254 0.77625 0.77477 1.17698 1.20956 1.20573 1.21231 0.94702 0.87939 1.55897 0.88454 1.19472 0.88781 0.86851 0.90346 0.92378 1.45755 1.17425 1.09625 1.61813 1.17208 0.86042 0.81655 0.78169 1.90866 1.21111 1.82773 1.47294 1.21512 0.87655 0.96988 1.08859 1.22080 0.99432 0.90526 1.01733 1.21729 0.94641 0.95690 1.11624 1.16518 0.74253 0.83229 0.74611 1.93249 1.92131 1.74968 1.54719 1.93232 1.32447 1.96105 1.93202 1.93241 1.75520 1.92306 1.53272 1.73029 1.24296 0.92186 1.15208 1.43787 1.08616 1.10557 1.42558 0.68000 1.23295 0.80907 0.72504 0.87668 1.92998 1.74038 1.96148 1.55197 1.93389 1.68911 1.54475 1.96292 1.93074 1.81637 1.48281 1.97007 0.92088 0.75017 0.79498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.48 9.50 21.45 0.20 -45.28 16 2 C 0.02 0.86 5.20 84.65 0.44 1.30 16 3 Si 0.98 37.81 29.54 68.60 2.03 39.84 16 4 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.56 -25.59 8.46 25.60 0.22 -25.37 16 8 H 0.10 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.25 11.37 2.21 44.24 0.10 11.46 16 10 H 0.06 3.03 7.58 -2.39 -0.02 3.01 16 11 N -0.70 -23.98 4.98 -449.64 -2.24 -26.22 16 12 C 0.58 20.14 7.34 86.59 0.64 20.78 16 13 O -0.54 -23.28 15.49 -4.10 -0.06 -23.35 16 14 C -0.02 -0.58 7.16 40.79 0.29 -0.29 16 15 C -0.11 -2.70 10.48 22.66 0.24 -2.46 16 16 C -0.08 -1.83 6.56 43.05 0.28 -1.55 16 17 C 0.57 11.91 3.55 71.24 0.25 12.16 16 18 F -0.17 -3.60 17.30 44.97 0.78 -2.82 16 19 F -0.17 -3.58 17.26 44.97 0.78 -2.80 16 20 F -0.16 -3.28 17.04 44.97 0.77 -2.52 16 21 N -0.21 -4.67 12.08 -47.50 -0.57 -5.24 16 22 N -0.33 -6.69 6.85 -47.99 -0.33 -7.02 16 23 H 0.47 6.17 8.22 -220.00 -1.81 4.36 16 24 C 0.41 19.68 2.81 71.98 0.20 19.88 16 25 F -0.20 -9.03 16.94 44.97 0.76 -8.27 16 26 F -0.15 -7.93 12.91 44.97 0.58 -7.35 16 27 F -0.22 -10.39 15.67 44.97 0.70 -9.68 16 28 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 29 H 0.41 10.89 7.72 -92.71 -0.72 10.18 16 30 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -60.05 298.28 4.81 -55.24 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -1.24 Total: 9.55 kcal Atomic # 6 Polarization: 33.25 SS G_CDS: 2.66 Total: 35.91 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.94 Total: -83.75 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.06 Total: -23.35 kcal Atomic # 9 Polarization: -37.81 SS G_CDS: 4.37 Total: -33.44 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -60.05 4.81 -55.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803111.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.111 kcal (2) G-P(sol) polarization free energy of solvation -60.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds