Wall clock time and date at job start Tue Mar 31 2020 16:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00069 * 2 1 4 4 H 1.48508 * 109.47183 * 240.00180 * 3 2 1 5 5 H 1.48500 * 109.47509 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47316 * 120.00281 * 3 2 1 7 7 C 1.37879 * 119.99555 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00145 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47273 * 60.00509 * 9 7 2 11 11 N 1.46505 * 109.46709 * 179.97438 * 9 7 2 12 12 C 1.34783 * 119.99520 * 204.99841 * 11 9 7 13 13 O 1.21615 * 120.00213 * 0.02562 * 12 11 9 14 14 C 1.47331 * 119.99625 * 180.02562 * 12 11 9 15 15 N 1.35760 * 126.23374 * 0.14754 * 14 12 11 16 16 C 1.30178 * 108.86268 * 180.30710 * 15 14 12 17 17 N 1.35842 * 109.00231 * 359.72991 * 16 15 14 18 18 H 0.96998 * 126.13431 * 179.97438 * 17 16 15 19 19 C 1.35378 * 107.73134 * 0.02562 * 17 16 15 20 20 C 1.50703 * 126.56509 * 180.02562 * 19 17 16 21 21 F 1.39905 * 109.47157 * 0.02562 * 20 19 17 22 22 F 1.39900 * 109.47159 * 240.02605 * 20 19 17 23 23 F 1.39897 * 109.47274 * 120.02296 * 20 19 17 24 24 C 1.53001 * 109.47249 * 299.99766 * 9 7 2 25 25 F 1.39900 * 109.47041 * 300.00071 * 24 9 7 26 26 F 1.39898 * 109.46728 * 60.00116 * 24 9 7 27 27 F 1.39899 * 109.47135 * 180.02562 * 24 9 7 28 28 H 0.97003 * 119.99610 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00324 * 25.00650 * 11 9 7 30 30 H 1.07997 * 125.49424 * 179.69294 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2030 -3.6127 0.0005 12 6 1.8368 -4.8123 -0.4928 13 8 0.7162 -4.9703 -0.9383 14 6 2.7940 -5.9323 -0.4923 15 7 4.0687 -5.8982 -0.0264 16 6 4.6107 -7.0695 -0.1972 17 7 3.7011 -7.8980 -0.7730 18 1 3.8438 -8.8277 -1.0101 19 6 2.5601 -7.1931 -0.9577 20 6 1.2786 -7.7024 -1.5655 21 9 1.4340 -9.0459 -1.9237 22 9 0.9705 -6.9490 -2.7033 23 9 0.2417 -7.5852 -0.6337 24 6 0.3709 -2.5799 1.2495 25 9 1.1748 -2.5056 2.3920 26 9 -0.5382 -1.5165 1.2489 27 9 -0.3282 -3.7917 1.2497 28 1 -0.4850 0.8401 0.0004 29 1 3.0968 -3.4866 0.3556 30 1 5.6206 -7.3387 0.0745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804865.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:33 Heat of formation + Delta-G solvation = -259.007543 kcal Electronic energy + Delta-G solvation = -29889.214202 eV Core-core repulsion = 24470.772346 eV Total energy + Delta-G solvation = -5418.441857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.12360 -48.29865 -47.73157 -47.46477 -45.94887 -45.56629 -42.54842 -38.71218 -34.70098 -33.34696 -32.42648 -31.08254 -28.52652 -26.03542 -24.54588 -23.32531 -22.23075 -21.09607 -20.11889 -19.44484 -18.44639 -18.29484 -17.43141 -16.83413 -16.75461 -16.56654 -16.18830 -15.61678 -15.47535 -14.95537 -14.73014 -14.48777 -14.38636 -14.08047 -13.97518 -13.67764 -13.65565 -13.61419 -13.09393 -12.86428 -12.60742 -12.45698 -12.34365 -12.22728 -11.93083 -11.76947 -11.15686 -10.83997 -10.81014 -10.69907 -10.55542 -10.39469 -9.65035 -9.58047 -9.19476 -8.68640 -8.25160 -6.19975 -4.43728 1.00028 2.05824 2.23224 2.78846 3.23842 3.28285 3.30076 3.57201 3.66516 3.70386 4.06078 4.21936 4.31905 4.38498 4.61521 4.73049 4.96843 5.10716 5.35863 5.83271 5.91353 5.93976 6.25546 6.68869 6.93808 7.12685 7.32926 7.51679 7.66294 8.31072 8.52092 8.80151 9.23477 10.71665 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.004312 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.119514 B = 6492.046202 C = 6957.243947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.244 3.756 10 H 0.088 0.912 11 N -0.687 5.687 12 C 0.579 3.421 13 O -0.520 6.520 14 C 0.041 3.959 15 N -0.456 5.456 16 C 0.225 3.775 17 N -0.544 5.544 18 H 0.431 0.569 19 C -0.066 4.066 20 C 0.554 3.446 21 F -0.188 7.188 22 F -0.152 7.152 23 F -0.151 7.151 24 C 0.417 3.583 25 F -0.208 7.208 26 F -0.136 7.136 27 F -0.217 7.217 28 H 0.269 0.731 29 H 0.408 0.592 30 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -15.659 -1.578 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.097 0.903 9 C 0.139 3.861 10 H 0.106 0.894 11 N -0.336 5.336 12 C 0.362 3.638 13 O -0.395 6.395 14 C -0.093 4.093 15 N -0.176 5.176 16 C -0.060 4.060 17 N -0.147 5.147 18 H 0.270 0.730 19 C -0.187 4.187 20 C 0.498 3.502 21 F -0.170 7.170 22 F -0.133 7.133 23 F -0.132 7.132 24 C 0.361 3.639 25 F -0.190 7.190 26 F -0.117 7.117 27 F -0.199 7.199 28 H 0.079 0.921 29 H 0.244 0.756 30 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.950 -14.869 -1.529 16.930 hybrid contribution 0.371 -0.475 0.010 0.603 sum 8.322 -15.344 -1.518 17.521 Atomic orbital electron populations 1.70397 1.05850 1.27482 1.43588 1.25078 0.95159 1.00100 0.94030 0.86250 0.79306 0.81221 0.78941 1.19780 1.20910 1.19788 1.20841 0.93867 0.87953 1.56164 0.90327 1.19819 0.88676 0.85596 0.92007 0.89399 1.45860 1.17710 1.09623 1.60409 1.16939 0.85570 0.81947 0.79378 1.90876 1.19428 1.82634 1.46580 1.20942 0.93294 0.92873 1.02212 1.70868 1.05843 1.21184 1.19662 1.25532 0.97031 0.85405 0.98046 1.42879 1.09924 1.14636 1.47262 0.72955 1.20728 0.90006 0.94974 1.12958 1.16833 0.82508 0.74055 0.76829 1.93164 1.95804 1.35560 1.92429 1.93299 1.93489 1.75789 1.50696 1.93310 1.59404 1.95415 1.65039 1.23094 0.80867 0.72876 0.87082 1.92995 1.74417 1.96177 1.55422 1.93407 1.68356 1.53735 1.96195 1.93077 1.81477 1.48330 1.96969 0.92059 0.75641 0.75507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.16 9.50 55.43 0.53 -22.64 16 2 C 0.07 1.71 5.20 -17.82 -0.09 1.61 16 3 Si 0.92 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 7 C -0.55 -14.27 8.46 -34.44 -0.29 -14.57 16 8 H 0.08 1.93 7.74 -52.49 -0.41 1.52 16 9 C 0.24 6.20 2.21 -69.08 -0.15 6.04 16 10 H 0.09 2.45 7.57 -51.93 -0.39 2.06 16 11 N -0.69 -14.98 4.98 -56.04 -0.28 -15.26 16 12 C 0.58 12.20 7.34 -12.56 -0.09 12.10 16 13 O -0.52 -12.25 12.49 5.26 0.07 -12.18 16 14 C 0.04 0.68 6.98 -83.09 -0.58 0.10 16 15 N -0.46 -6.38 11.01 -11.03 -0.12 -6.50 16 16 C 0.23 1.93 13.04 -89.91 -1.17 0.76 16 17 N -0.54 -4.65 5.97 -10.11 -0.06 -4.71 16 18 H 0.43 1.94 8.77 -40.82 -0.36 1.59 16 19 C -0.07 -0.91 6.50 -81.68 -0.53 -1.45 16 20 C 0.55 8.09 2.81 36.01 0.10 8.20 16 21 F -0.19 -2.17 17.03 2.25 0.04 -2.13 16 22 F -0.15 -2.52 16.15 2.25 0.04 -2.48 16 23 F -0.15 -2.56 16.20 2.25 0.04 -2.52 16 24 C 0.42 10.91 2.81 37.16 0.10 11.01 16 25 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 26 F -0.14 -3.80 12.91 2.25 0.03 -3.77 16 27 F -0.22 -5.62 15.68 2.25 0.04 -5.58 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.41 8.15 8.25 -40.82 -0.34 7.82 16 30 H 0.23 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 293.78 15.07 4.43 4.43 Total: -1.00 -32.51 293.78 -4.01 -36.51 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -1.05 Total: 3.02 kcal Atomic # 6 Polarization: 26.53 SS G_CDS: -2.71 Total: 23.82 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.07 Total: -49.11 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 9 Polarization: -21.94 SS G_CDS: 0.21 Total: -21.73 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.51 -4.01 -36.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804865.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.493 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds