Wall clock time and date at job start Tue Mar 31 2020 16:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00069 * 2 1 4 4 H 1.48508 * 109.47183 * 240.00180 * 3 2 1 5 5 H 1.48500 * 109.47509 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47316 * 120.00281 * 3 2 1 7 7 C 1.37879 * 119.99555 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00145 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47273 * 60.00509 * 9 7 2 11 11 N 1.46505 * 109.46709 * 179.97438 * 9 7 2 12 12 C 1.34783 * 119.99520 * 204.99841 * 11 9 7 13 13 O 1.21615 * 120.00213 * 0.02562 * 12 11 9 14 14 C 1.47331 * 119.99625 * 180.02562 * 12 11 9 15 15 N 1.35760 * 126.23374 * 0.14754 * 14 12 11 16 16 C 1.30178 * 108.86268 * 180.30710 * 15 14 12 17 17 N 1.35842 * 109.00231 * 359.72991 * 16 15 14 18 18 H 0.96998 * 126.13431 * 179.97438 * 17 16 15 19 19 C 1.35378 * 107.73134 * 0.02562 * 17 16 15 20 20 C 1.50703 * 126.56509 * 180.02562 * 19 17 16 21 21 F 1.39905 * 109.47157 * 0.02562 * 20 19 17 22 22 F 1.39900 * 109.47159 * 240.02605 * 20 19 17 23 23 F 1.39897 * 109.47274 * 120.02296 * 20 19 17 24 24 C 1.53001 * 109.47249 * 299.99766 * 9 7 2 25 25 F 1.39900 * 109.47041 * 300.00071 * 24 9 7 26 26 F 1.39898 * 109.46728 * 60.00116 * 24 9 7 27 27 F 1.39899 * 109.47135 * 180.02562 * 24 9 7 28 28 H 0.97003 * 119.99610 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00324 * 25.00650 * 11 9 7 30 30 H 1.07997 * 125.49424 * 179.69294 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2030 -3.6127 0.0005 12 6 1.8368 -4.8123 -0.4928 13 8 0.7162 -4.9703 -0.9383 14 6 2.7940 -5.9323 -0.4923 15 7 4.0687 -5.8982 -0.0264 16 6 4.6107 -7.0695 -0.1972 17 7 3.7011 -7.8980 -0.7730 18 1 3.8438 -8.8277 -1.0101 19 6 2.5601 -7.1931 -0.9577 20 6 1.2786 -7.7024 -1.5655 21 9 1.4340 -9.0459 -1.9237 22 9 0.9705 -6.9490 -2.7033 23 9 0.2417 -7.5852 -0.6337 24 6 0.3709 -2.5799 1.2495 25 9 1.1748 -2.5056 2.3920 26 9 -0.5382 -1.5165 1.2489 27 9 -0.3282 -3.7917 1.2497 28 1 -0.4850 0.8401 0.0004 29 1 3.0968 -3.4866 0.3556 30 1 5.6206 -7.3387 0.0745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804865.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:32 Heat of formation + Delta-G solvation = -281.984282 kcal Electronic energy + Delta-G solvation = -29890.210548 eV Core-core repulsion = 24470.772346 eV Total energy + Delta-G solvation = -5419.438203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.28150 -50.41796 -48.84431 -48.72225 -48.05201 -47.72431 -43.50287 -40.36505 -36.55758 -34.65112 -34.01695 -32.18568 -30.36286 -27.25077 -26.57314 -24.74873 -23.23245 -22.75002 -21.48074 -20.74728 -19.63608 -19.54950 -19.07194 -18.86477 -18.65770 -18.24689 -17.78921 -16.92208 -16.84943 -16.62822 -16.17663 -15.67342 -15.54058 -15.32129 -15.17996 -15.12198 -14.94703 -14.93810 -14.89595 -14.85295 -14.49007 -14.43301 -14.28303 -14.02266 -13.86225 -13.71514 -13.05937 -12.77554 -12.59926 -12.22268 -11.72324 -11.59647 -11.51087 -11.23511 -10.66674 -10.30054 -10.03386 -8.20015 -6.51209 -0.13052 1.04149 1.26999 1.48396 1.51474 1.59636 1.80266 2.10321 2.21973 2.40685 2.54851 2.60729 2.94935 3.02047 3.19231 3.21742 3.74656 3.82470 3.87613 3.99779 4.20498 4.42835 4.83372 4.93945 5.34055 5.52682 5.64532 6.04690 6.39659 6.52436 6.68641 7.12023 7.24117 8.72701 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.004312 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.119514 B = 6492.046202 C = 6957.243947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.563 4.563 8 H 0.090 0.910 9 C 0.252 3.748 10 H 0.053 0.947 11 N -0.686 5.686 12 C 0.573 3.427 13 O -0.556 6.556 14 C 0.006 3.994 15 N -0.492 5.492 16 C 0.263 3.737 17 N -0.519 5.519 18 H 0.453 0.547 19 C -0.061 4.061 20 C 0.551 3.449 21 F -0.167 7.167 22 F -0.168 7.168 23 F -0.169 7.169 24 C 0.414 3.586 25 F -0.203 7.203 26 F -0.148 7.148 27 F -0.218 7.218 28 H 0.269 0.731 29 H 0.416 0.584 30 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.702 -16.887 -1.357 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.189 4.189 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.599 4.599 8 H 0.108 0.892 9 C 0.145 3.855 10 H 0.071 0.929 11 N -0.336 5.336 12 C 0.358 3.642 13 O -0.433 6.433 14 C -0.127 4.127 15 N -0.211 5.211 16 C -0.022 4.022 17 N -0.123 5.123 18 H 0.298 0.702 19 C -0.184 4.184 20 C 0.496 3.504 21 F -0.148 7.148 22 F -0.149 7.149 23 F -0.151 7.151 24 C 0.358 3.642 25 F -0.185 7.185 26 F -0.129 7.129 27 F -0.200 7.200 28 H 0.079 0.921 29 H 0.254 0.746 30 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 11.037 -16.160 -1.312 19.613 hybrid contribution -0.530 -0.253 -0.063 0.591 sum 10.507 -16.413 -1.374 19.536 Atomic orbital electron populations 1.70527 1.07467 1.28307 1.44471 1.26005 0.95928 1.03671 0.93332 0.85184 0.77996 0.76600 0.79390 1.18692 1.20820 1.19020 1.21165 0.94492 0.88249 1.56037 0.89156 1.19422 0.88820 0.87130 0.90127 0.92930 1.45707 1.17400 1.09363 1.61117 1.17545 0.86044 0.82536 0.78032 1.90839 1.21317 1.83338 1.47845 1.20284 0.94297 0.92376 1.05773 1.70805 1.04709 1.24267 1.21358 1.26736 0.98133 0.83278 0.94063 1.42858 1.07937 1.15564 1.45966 0.70214 1.20429 0.90925 0.94620 1.12392 1.16930 0.82552 0.74787 0.76174 1.93200 1.95650 1.33785 1.92200 1.93263 1.93682 1.76442 1.51544 1.93269 1.60498 1.95611 1.65695 1.23253 0.80826 0.72467 0.87643 1.92988 1.74196 1.96150 1.55164 1.93380 1.68877 1.54375 1.96299 1.93067 1.81585 1.48359 1.97010 0.92066 0.74648 0.69366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.22 9.50 21.45 0.20 -49.01 16 2 C 0.02 0.84 5.20 84.65 0.44 1.28 16 3 Si 0.99 41.22 29.54 68.60 2.03 43.25 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.56 -29.42 8.46 25.60 0.22 -29.20 16 8 H 0.09 4.39 7.74 -2.91 -0.02 4.37 16 9 C 0.25 13.20 2.21 44.24 0.10 13.30 16 10 H 0.05 3.12 7.57 -2.39 -0.02 3.10 16 11 N -0.69 -30.64 4.98 -449.45 -2.24 -32.88 16 12 C 0.57 24.80 7.34 86.63 0.64 25.43 16 13 O -0.56 -27.40 12.49 -4.08 -0.05 -27.45 16 14 C 0.01 0.19 6.98 40.50 0.28 0.47 16 15 N -0.49 -12.55 11.01 -188.82 -2.08 -14.63 16 16 C 0.26 3.27 13.04 180.10 2.35 5.61 16 17 N -0.52 -6.82 5.97 -185.91 -1.11 -7.93 16 18 H 0.45 1.91 8.77 -92.71 -0.81 1.10 16 19 C -0.06 -1.58 6.50 41.59 0.27 -1.31 16 20 C 0.55 15.86 2.81 71.24 0.20 16.06 16 21 F -0.17 -3.55 17.03 44.97 0.77 -2.78 16 22 F -0.17 -5.69 16.15 44.97 0.73 -4.96 16 23 F -0.17 -5.87 16.20 44.97 0.73 -5.14 16 24 C 0.41 22.31 2.81 71.98 0.20 22.51 16 25 F -0.20 -10.41 16.94 44.97 0.76 -9.65 16 26 F -0.15 -8.55 12.91 44.97 0.58 -7.97 16 27 F -0.22 -11.73 15.68 44.97 0.70 -11.02 16 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.42 16.79 8.25 -92.71 -0.77 16.02 16 30 H 0.29 -0.40 8.06 -2.91 -0.02 -0.42 16 Total: -1.00 -74.47 293.78 5.42 -69.05 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -0.29 Total: 6.97 kcal Atomic # 6 Polarization: 49.47 SS G_CDS: 4.69 Total: 54.16 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -5.23 Total: -104.45 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 9 Polarization: -45.80 SS G_CDS: 4.27 Total: -41.53 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -74.47 5.42 -69.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804865.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.935 kcal (2) G-P(sol) polarization free energy of solvation -74.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds