Wall clock time and date at job start Tue Mar 31 2020 15:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 113.99824 * 2 1 4 4 C 1.52995 * 109.47310 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47602 * 65.00037 * 4 3 2 6 6 C 1.46498 * 119.99842 * 87.45338 * 5 4 3 7 7 C 1.50708 * 109.46703 * 80.21283 * 6 5 4 8 8 H 1.07997 * 119.99949 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99964 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00062 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47156 * 59.99642 * 11 9 7 13 13 H 1.48501 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46853 * 299.99427 * 11 9 7 15 15 C 1.34782 * 119.99927 * 267.46642 * 5 4 3 16 16 O 1.21624 * 119.99908 * 1.45008 * 15 5 4 17 17 C 1.47262 * 119.99517 * 181.45261 * 15 5 4 18 18 C 1.38676 * 122.92492 * 25.39507 * 17 15 5 19 19 C 1.36406 * 113.40474 * 179.97438 * 18 17 15 20 20 C 1.41327 * 125.11054 * 179.97438 * 19 18 17 21 21 O 1.21441 * 119.99925 * 0.02562 * 20 19 18 22 22 S 1.75679 * 109.77876 * 0.02562 * 19 18 17 23 23 C 1.37047 * 122.91668 * 205.09788 * 17 15 5 24 24 Cl 1.73597 * 124.63673 * 359.97438 * 23 17 15 25 25 H 1.09002 * 109.46869 * 299.99454 * 1 2 3 26 26 H 1.08995 * 109.47523 * 59.99622 * 1 2 3 27 27 H 1.09000 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46579 * 60.00338 * 3 2 1 29 29 H 1.08996 * 109.46935 * 300.00708 * 3 2 1 30 30 H 1.09007 * 109.46847 * 304.99925 * 4 3 2 31 31 H 1.08999 * 109.47048 * 185.00657 * 4 3 2 32 32 H 1.08995 * 109.47217 * 200.20249 * 6 5 4 33 33 H 1.08998 * 109.47330 * 320.21259 * 6 5 4 34 34 H 0.97000 * 120.00036 * 180.02562 * 10 9 7 35 35 H 1.08003 * 123.29504 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.99988 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5647 -1.2527 6 6 4.2327 1.3961 -2.4312 7 6 5.5963 2.0270 -2.3131 8 1 6.2098 1.8287 -1.4467 9 6 6.0600 2.8580 -3.3107 10 7 5.3127 3.0998 -4.3655 11 14 7.7499 3.6405 -3.1640 12 1 8.7820 2.5766 -3.0747 13 1 8.0105 4.4833 -4.3587 14 1 7.8007 4.4834 -1.9425 15 6 4.1442 -0.7709 -1.3204 16 8 3.9053 -1.4639 -0.3499 17 6 4.6175 -1.3908 -2.5695 18 6 5.3754 -0.7087 -3.5094 19 6 5.7084 -1.4689 -4.5920 20 6 6.4727 -1.0233 -5.6940 21 8 6.8876 0.1177 -5.7236 22 16 5.0431 -3.0848 -4.4110 23 6 4.3523 -2.6938 -2.9013 24 17 3.4361 -3.7948 -1.9206 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6885 1.8464 0.8901 29 1 1.6884 1.8464 -0.8899 30 1 3.8514 0.5684 0.8410 31 1 3.9784 2.1767 0.0890 32 1 4.1952 0.7773 -3.3276 33 1 3.4754 2.1773 -2.4968 34 1 5.6391 3.6842 -5.0675 35 1 5.6729 0.3232 -3.3954 36 1 6.6886 -1.6977 -6.5095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931895744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:27 Heat of formation + Delta-G solvation = -79.422648 kcal Electronic energy + Delta-G solvation = -24634.051268 eV Core-core repulsion = 20850.970643 eV Total energy + Delta-G solvation = -3783.080626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35670 -40.04524 -38.80083 -38.05215 -37.48129 -36.67209 -34.60537 -31.63510 -31.09260 -29.03657 -27.40344 -26.63901 -25.35845 -24.87927 -22.98829 -20.69450 -20.20169 -19.26799 -18.57396 -17.77424 -17.39990 -17.07031 -16.72450 -16.58944 -16.54613 -16.08761 -15.72705 -15.65247 -15.17297 -14.87832 -14.74727 -14.42331 -14.20958 -13.92877 -13.45343 -13.18506 -13.02753 -12.93851 -12.71851 -12.61575 -12.45306 -12.17479 -12.06511 -11.98276 -11.74804 -11.62062 -10.93609 -10.72610 -10.58062 -10.49941 -9.80863 -9.55473 -9.38810 -8.21088 -6.35521 -0.98071 -0.10899 0.50951 0.57761 1.08216 1.40189 1.44639 1.49195 1.85795 2.28007 2.32942 2.50319 2.97221 3.10920 3.44726 3.86885 3.97863 4.16779 4.25146 4.38074 4.41724 4.52561 4.53355 4.57701 4.69547 4.80946 4.89005 4.96945 5.11545 5.22261 5.37948 5.66197 5.81205 6.01271 6.33241 6.56637 6.59185 6.79590 7.30209 7.42044 8.82078 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.009284 B = 0.006936 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.291352 B = 4035.756441 C = 6433.592444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.403 6.403 3 C 0.052 3.948 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.239 3.761 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.044 3.956 10 N -0.894 5.894 11 Si 0.944 3.056 12 H -0.279 1.279 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.568 3.432 16 O -0.555 6.555 17 C -0.180 4.180 18 C -0.048 4.048 19 C -0.352 4.352 20 C 0.403 3.597 21 O -0.486 6.486 22 S 0.387 5.613 23 C -0.133 4.133 24 Cl 0.019 6.981 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.044 0.956 33 H 0.016 0.984 34 H 0.268 0.732 35 H 0.193 0.807 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.728 -11.086 -0.543 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.322 6.322 3 C -0.026 4.026 4 C -0.004 4.004 5 N -0.320 5.320 6 C 0.118 3.882 7 C -0.592 4.592 8 H 0.073 0.927 9 C -0.160 4.160 10 N -0.531 5.531 11 Si 0.770 3.230 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.191 1.191 15 C 0.355 3.645 16 O -0.436 6.436 17 C -0.198 4.198 18 C -0.078 4.078 19 C -0.470 4.470 20 C 0.264 3.736 21 O -0.363 6.363 22 S 0.654 5.346 23 C -0.281 4.281 24 Cl 0.048 6.952 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.210 0.790 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.607 -12.312 -1.043 13.187 hybrid contribution 0.308 2.210 1.130 2.501 sum -4.299 -10.102 0.087 10.979 Atomic orbital electron populations 1.22842 0.80411 1.03081 1.00488 1.88060 1.20662 1.28032 1.95439 1.22960 0.93700 0.84948 1.00960 1.21495 0.92924 0.99430 0.86531 1.47907 1.64642 1.05871 1.13564 1.19649 0.95274 0.89840 0.83436 1.21431 1.02216 1.29369 1.06172 0.92657 1.25446 1.00108 0.95900 0.94547 1.69946 1.38155 1.36197 1.08788 0.85821 0.80944 0.78564 0.77700 1.20472 1.20871 1.19102 1.17668 0.77539 0.82411 0.86880 1.90702 1.52841 1.62247 1.37783 1.19238 1.07246 0.93826 0.99533 1.22610 0.91051 1.03891 0.90224 1.24932 1.15791 1.00874 1.05441 1.22509 0.74740 0.89299 0.87091 1.90714 1.43599 1.23058 1.78882 1.81995 1.41056 1.06336 1.05176 1.26118 1.04386 0.95310 1.02322 1.98382 1.70175 1.58146 1.68517 0.92519 0.94218 0.89459 0.89982 0.93878 0.90512 0.88080 0.93905 0.96620 0.92325 0.79037 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -14.42 9.73 -146.62 -1.43 -15.85 16 3 C 0.05 1.70 6.28 71.98 0.45 2.15 16 4 C 0.12 4.50 5.83 86.38 0.50 5.00 16 5 N -0.59 -26.08 2.44 -830.23 -2.03 -28.10 16 6 C 0.24 11.61 4.66 85.64 0.40 12.01 16 7 C -0.55 -28.69 7.28 25.60 0.19 -28.51 16 8 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.04 2.33 5.26 84.65 0.45 2.78 16 10 N -0.89 -49.30 13.29 21.45 0.28 -49.02 16 11 Si 0.94 43.23 29.54 68.60 2.03 45.26 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 C 0.57 25.49 7.17 86.61 0.62 26.11 16 16 O -0.56 -25.94 14.28 -1.74 -0.02 -25.96 16 17 C -0.18 -7.34 5.45 -21.08 -0.11 -7.46 16 18 C -0.05 -2.01 7.37 21.95 0.16 -1.85 16 19 C -0.35 -11.52 6.22 22.60 0.14 -11.38 16 20 C 0.40 12.31 11.45 68.58 0.79 13.09 16 21 O -0.49 -20.77 17.51 -3.53 -0.06 -20.83 16 22 S 0.39 9.09 23.01 -56.49 -1.30 7.79 16 23 C -0.13 -4.40 6.88 67.54 0.46 -3.94 16 24 Cl 0.02 0.59 27.50 -2.72 -0.07 0.52 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 2.96 7.37 -2.38 -0.02 2.95 16 31 H 0.10 3.62 8.09 -2.39 -0.02 3.60 16 32 H 0.04 2.22 4.44 -2.39 -0.01 2.21 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.19 9.60 3.26 -2.91 -0.01 9.59 16 36 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -69.34 339.66 3.82 -65.52 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.13 Total: 10.67 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.29 Total: 10.00 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -1.74 Total: -77.12 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -1.51 Total: -62.64 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 9.09 SS G_CDS: -1.30 Total: 7.79 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.07 Total: 0.52 kcal Total: -69.34 3.82 -65.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931895744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.901 kcal (2) G-P(sol) polarization free energy of solvation -69.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds