Wall clock time and date at job start Tue Mar 31 2020 16:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47426 * 299.99938 * 3 2 1 6 6 H 1.48497 * 109.47269 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 H 1.09001 * 111.03628 * 155.18095 * 11 10 9 13 13 O 1.42891 * 111.00999 * 279.02161 * 11 10 9 14 14 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 15 15 H 1.08995 * 110.87585 * 82.93006 * 14 11 10 16 16 C 1.53006 * 110.71889 * 206.13300 * 14 11 10 17 17 N 1.46500 * 109.46719 * 179.97438 * 16 14 11 18 18 C 1.34781 * 119.99697 * 180.02562 * 17 16 14 19 19 O 1.21628 * 119.99703 * 359.97438 * 18 17 16 20 20 C 1.47222 * 120.00170 * 180.02562 * 18 17 16 21 21 N 1.30605 * 125.53203 * 359.68791 * 20 18 17 22 22 C 1.30730 * 115.89976 * 179.78203 * 21 20 18 23 23 Cl 1.73603 * 122.12705 * 180.24032 * 22 21 20 24 24 C 1.34339 * 115.75645 * 0.51920 * 22 21 20 25 25 S 1.71070 * 109.09278 * 359.72100 * 24 22 21 26 26 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 27 27 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 28 28 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 29 29 H 1.08996 * 110.53057 * 274.75420 * 10 9 7 30 30 H 0.96705 * 114.00245 * 292.19608 * 13 11 10 31 31 H 1.08996 * 109.46429 * 299.97004 * 16 14 11 32 32 H 1.08997 * 109.47048 * 59.97457 * 16 14 11 33 33 H 0.97000 * 120.00631 * 359.97438 * 17 16 14 34 34 H 1.08006 * 125.45599 * 179.72493 * 24 22 21 35 35 H 1.09002 * 109.88367 * 61.61048 * 26 9 7 36 36 H 1.09000 * 109.88319 * 300.59666 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 1 -1.3579 -4.3402 -0.2796 13 8 -0.3374 -3.8893 -2.0391 14 6 0.7805 -4.7551 -0.0292 15 1 0.5514 -5.1052 0.9772 16 6 1.1275 -5.9317 -0.9437 17 7 2.2453 -6.6840 -0.3686 18 6 2.7257 -7.7699 -1.0062 19 8 2.2309 -8.1254 -2.0589 20 6 3.8486 -8.5263 -0.4280 21 7 4.4619 -8.2395 0.6888 22 6 5.4350 -9.0436 1.0287 23 17 6.3543 -8.8169 2.4839 24 6 5.6824 -10.0531 0.1776 25 16 4.5879 -9.9603 -1.1338 26 6 1.9316 -3.7276 -0.0005 27 1 -0.4849 0.8401 0.0004 28 1 -0.6042 -1.7636 -0.6122 29 1 -0.5315 -2.4935 1.0198 30 1 -1.0559 -3.3884 -2.4488 31 1 0.2606 -6.5853 -1.0394 32 1 1.4100 -5.5564 -1.9273 33 1 2.6402 -6.4002 0.4708 34 1 6.4494 -10.8033 0.3015 35 1 2.5285 -3.8644 0.9012 36 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958328307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:49 Heat of formation + Delta-G solvation = -9.727397 kcal Electronic energy + Delta-G solvation = -23242.817219 eV Core-core repulsion = 19495.051558 eV Total energy + Delta-G solvation = -3747.765662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.54109 -39.39287 -38.21054 -36.89016 -35.00017 -34.53441 -32.27733 -31.09980 -29.61211 -27.85191 -26.85725 -25.34855 -23.60610 -22.15802 -20.62367 -19.97607 -19.72758 -18.93188 -17.52573 -17.30537 -16.41431 -16.05144 -15.89987 -15.65686 -14.88195 -14.79705 -14.26404 -14.18009 -13.84051 -13.77073 -13.24548 -12.71055 -12.52516 -12.37412 -12.04112 -11.93378 -11.44538 -11.39876 -11.24712 -10.83060 -10.80711 -10.66571 -10.38214 -10.35509 -10.24802 -10.06465 -9.89905 -9.81997 -9.26497 -9.12016 -8.99400 -8.68343 -6.83622 -5.68829 -3.08252 -0.27451 0.56175 0.84070 1.76747 1.81652 2.90162 3.03490 3.39341 3.45237 3.47479 3.92907 4.46470 4.49453 4.61247 4.72476 5.07014 5.13466 5.29227 5.39053 5.51360 5.58688 5.87990 5.98520 6.09795 6.29479 6.33839 6.43411 6.63399 6.77396 6.85020 7.27517 7.37034 7.58447 7.75194 7.95268 8.22683 8.36491 9.18796 9.80368 10.44528 11.36602 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.002846 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.728645 B = 9837.318272 C =11159.426742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.126 3.874 11 C 0.083 3.917 12 H 0.056 0.944 13 O -0.558 6.558 14 C -0.107 4.107 15 H 0.088 0.912 16 C 0.138 3.862 17 N -0.694 5.694 18 C 0.594 3.406 19 O -0.526 6.526 20 C 0.002 3.998 21 N -0.420 5.420 22 C 0.110 3.890 23 Cl -0.005 7.005 24 C -0.277 4.277 25 S 0.296 5.704 26 C 0.143 3.857 27 H 0.251 0.749 28 H 0.112 0.888 29 H 0.020 0.980 30 H 0.376 0.624 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.412 0.588 34 H 0.195 0.805 35 H 0.021 0.979 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -21.930 0.598 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.000 4.000 11 C 0.023 3.977 12 H 0.073 0.927 13 O -0.363 6.363 14 C -0.126 4.126 15 H 0.106 0.894 16 C 0.015 3.985 17 N -0.345 5.345 18 C 0.375 3.625 19 O -0.402 6.402 20 C -0.274 4.274 21 N -0.139 5.139 22 C -0.055 4.055 23 Cl 0.023 6.977 24 C -0.420 4.420 25 S 0.551 5.449 26 C 0.017 3.983 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.038 0.962 30 H 0.223 0.777 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.248 0.752 34 H 0.212 0.788 35 H 0.038 0.962 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.797 -22.387 -0.551 23.402 hybrid contribution 0.937 1.498 1.645 2.414 sum 7.733 -20.888 1.094 22.301 Atomic orbital electron populations 1.69750 1.04905 1.24644 1.58193 1.24757 0.95756 0.97703 1.02570 0.85979 0.78693 0.83525 0.77209 1.20534 1.21741 1.21802 1.19139 0.90556 0.82378 1.42406 0.90402 1.44412 1.01473 0.99731 1.86705 1.22633 0.85745 0.92946 0.98629 1.23182 0.95033 0.98088 0.81412 0.92655 1.86381 1.54259 1.76765 1.18917 1.22526 0.97565 0.94237 0.98313 0.89406 1.21422 0.87453 0.91532 0.98048 1.45926 1.35207 1.27007 1.26368 1.16593 0.80939 0.80839 0.84119 1.90886 1.59171 1.68499 1.21672 1.27695 1.03159 1.00988 0.95593 1.66272 1.06695 1.27291 1.13639 1.20408 0.96599 0.94411 0.94057 1.98419 1.69662 1.96980 1.32615 1.26664 1.09046 1.05667 1.00596 1.84161 1.20608 1.21935 1.18231 1.21315 0.93320 0.85652 0.97994 0.93822 0.87053 0.96232 0.77740 0.91126 0.89454 0.75203 0.78827 0.96157 0.95377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.50 10.11 55.49 0.56 -25.94 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.05 10.28 -15.05 -0.15 -6.20 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.15 3.41 -169.81 -0.58 -15.73 16 10 C 0.13 2.92 5.65 -2.35 -0.01 2.91 16 11 C 0.08 1.50 4.17 -24.58 -0.10 1.40 16 12 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 13 O -0.56 -10.02 12.22 -35.23 -0.43 -10.45 16 14 C -0.11 -1.79 2.95 -88.78 -0.26 -2.06 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 16 C 0.14 2.12 4.59 -4.04 -0.02 2.10 16 17 N -0.69 -9.71 5.40 -61.45 -0.33 -10.04 16 18 C 0.59 8.43 7.81 -12.61 -0.10 8.33 16 19 O -0.53 -8.64 16.94 5.25 0.09 -8.55 16 20 C 0.00 0.02 7.46 -14.42 -0.11 -0.09 16 21 N -0.42 -5.15 10.24 -8.61 -0.09 -5.24 16 22 C 0.11 1.14 7.22 -19.40 -0.14 1.00 16 23 Cl 0.00 -0.05 29.20 -51.86 -1.51 -1.56 16 24 C -0.28 -2.13 10.93 29.36 0.32 -1.81 16 25 S 0.30 2.50 23.03 -107.50 -2.48 0.02 16 26 C 0.14 2.97 6.52 -3.06 -0.02 2.95 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.11 2.90 5.88 -51.93 -0.31 2.59 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.38 5.49 9.12 45.56 0.42 5.91 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.54 7.44 -51.93 -0.39 1.16 16 33 H 0.41 5.43 7.98 -40.82 -0.33 5.11 16 34 H 0.19 0.87 8.06 -52.48 -0.42 0.44 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.03 0.61 7.76 -51.93 -0.40 0.21 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -32.50 337.54 -8.48 -40.98 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.09 Total: 6.24 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.69 Total: 8.08 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.44 Total: -56.94 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.34 Total: -19.00 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.48 Total: 0.02 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.51 Total: -1.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.50 -8.48 -40.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958328307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.252 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds