Wall clock time and date at job start Tue Mar 31 2020 16:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47426 * 299.99938 * 3 2 1 6 6 H 1.48497 * 109.47269 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 H 1.09001 * 111.03628 * 155.18095 * 11 10 9 13 13 O 1.42891 * 111.00999 * 279.02161 * 11 10 9 14 14 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 15 15 H 1.08995 * 110.87585 * 82.93006 * 14 11 10 16 16 C 1.53006 * 110.71889 * 206.13300 * 14 11 10 17 17 N 1.46500 * 109.46719 * 179.97438 * 16 14 11 18 18 C 1.34781 * 119.99697 * 180.02562 * 17 16 14 19 19 O 1.21628 * 119.99703 * 359.97438 * 18 17 16 20 20 C 1.47222 * 120.00170 * 180.02562 * 18 17 16 21 21 N 1.30605 * 125.53203 * 359.68791 * 20 18 17 22 22 C 1.30730 * 115.89976 * 179.78203 * 21 20 18 23 23 Cl 1.73603 * 122.12705 * 180.24032 * 22 21 20 24 24 C 1.34339 * 115.75645 * 0.51920 * 22 21 20 25 25 S 1.71070 * 109.09278 * 359.72100 * 24 22 21 26 26 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 27 27 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 28 28 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 29 29 H 1.08996 * 110.53057 * 274.75420 * 10 9 7 30 30 H 0.96705 * 114.00245 * 292.19608 * 13 11 10 31 31 H 1.08996 * 109.46429 * 299.97004 * 16 14 11 32 32 H 1.08997 * 109.47048 * 59.97457 * 16 14 11 33 33 H 0.97000 * 120.00631 * 359.97438 * 17 16 14 34 34 H 1.08006 * 125.45599 * 179.72493 * 24 22 21 35 35 H 1.09002 * 109.88367 * 61.61048 * 26 9 7 36 36 H 1.09000 * 109.88319 * 300.59666 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 1 -1.3579 -4.3402 -0.2796 13 8 -0.3374 -3.8893 -2.0391 14 6 0.7805 -4.7551 -0.0292 15 1 0.5514 -5.1052 0.9772 16 6 1.1275 -5.9317 -0.9437 17 7 2.2453 -6.6840 -0.3686 18 6 2.7257 -7.7699 -1.0062 19 8 2.2309 -8.1254 -2.0589 20 6 3.8486 -8.5263 -0.4280 21 7 4.4619 -8.2395 0.6888 22 6 5.4350 -9.0436 1.0287 23 17 6.3543 -8.8169 2.4839 24 6 5.6824 -10.0531 0.1776 25 16 4.5879 -9.9603 -1.1338 26 6 1.9316 -3.7276 -0.0005 27 1 -0.4849 0.8401 0.0004 28 1 -0.6042 -1.7636 -0.6122 29 1 -0.5315 -2.4935 1.0198 30 1 -1.0559 -3.3884 -2.4488 31 1 0.2606 -6.5853 -1.0394 32 1 1.4100 -5.5564 -1.9273 33 1 2.6402 -6.4002 0.4708 34 1 6.4494 -10.8033 0.3015 35 1 2.5285 -3.8644 0.9012 36 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958328307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:49 Heat of formation + Delta-G solvation = -35.609125 kcal Electronic energy + Delta-G solvation = -23243.939535 eV Core-core repulsion = 19495.051558 eV Total energy + Delta-G solvation = -3748.887978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44755 -40.46537 -39.67676 -37.61837 -36.32546 -36.16701 -34.00796 -32.14754 -31.08371 -29.45304 -27.95101 -26.98633 -25.11854 -23.17037 -22.19248 -21.30249 -20.89879 -19.82962 -19.12332 -18.48645 -17.94275 -17.04027 -16.88530 -16.81217 -16.64638 -16.02976 -15.66747 -15.55602 -15.20444 -14.80580 -14.48842 -14.41548 -13.94551 -13.66769 -13.21583 -13.17651 -13.05731 -12.77587 -12.65910 -12.31453 -12.16348 -12.05894 -11.91104 -11.83779 -11.81585 -11.53226 -11.08828 -10.96116 -10.81383 -10.65284 -10.28210 -9.88202 -8.85530 -7.79233 -5.21053 -1.03952 -0.14908 0.10328 0.93570 1.10301 1.46042 1.46512 1.56747 1.91068 2.02098 2.48614 3.01680 3.28566 3.36935 3.59444 3.73731 3.89237 3.95112 3.97573 4.03162 4.37866 4.43720 4.59990 4.64583 4.82024 4.90033 5.00621 5.20484 5.33436 5.40304 5.50934 5.77539 5.96950 6.28591 6.32072 6.88095 6.99450 7.11323 7.77446 8.40743 9.23345 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.002846 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.728645 B = 9837.318272 C =11159.426742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.064 4.064 3 Si 0.978 3.022 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.237 4.237 8 H 0.074 0.926 9 N -0.620 5.620 10 C 0.125 3.875 11 C 0.097 3.903 12 H 0.093 0.907 13 O -0.568 6.568 14 C -0.093 4.093 15 H 0.112 0.888 16 C 0.153 3.847 17 N -0.694 5.694 18 C 0.597 3.403 19 O -0.555 6.555 20 C -0.043 4.043 21 N -0.436 5.436 22 C 0.082 3.918 23 Cl -0.006 7.006 24 C -0.249 4.249 25 S 0.359 5.641 26 C 0.142 3.858 27 H 0.247 0.753 28 H 0.081 0.919 29 H 0.002 0.998 30 H 0.389 0.611 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.416 0.584 34 H 0.231 0.769 35 H 0.025 0.975 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.895 -24.089 0.653 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.366 4.366 8 H 0.092 0.908 9 N -0.346 5.346 10 C 0.000 4.000 11 C 0.036 3.964 12 H 0.111 0.889 13 O -0.376 6.376 14 C -0.112 4.112 15 H 0.130 0.870 16 C 0.030 3.970 17 N -0.345 5.345 18 C 0.380 3.620 19 O -0.434 6.434 20 C -0.317 4.317 21 N -0.156 5.156 22 C -0.083 4.083 23 Cl 0.022 6.978 24 C -0.392 4.392 25 S 0.613 5.387 26 C 0.016 3.984 27 H 0.057 0.943 28 H 0.098 0.902 29 H 0.020 0.980 30 H 0.238 0.762 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.252 0.748 34 H 0.247 0.753 35 H 0.043 0.957 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 7.749 -24.558 -0.493 25.757 hybrid contribution 0.734 2.073 1.607 2.724 sum 8.483 -22.485 1.114 24.058 Atomic orbital electron populations 1.69985 1.05932 1.24919 1.58762 1.25540 0.96712 1.00646 1.02773 0.85018 0.77965 0.79569 0.76822 1.19597 1.21746 1.21735 1.19437 0.90834 0.83946 1.42360 0.90774 1.44718 1.02664 1.00626 1.86632 1.22517 0.84548 0.95491 0.97416 1.23057 0.97161 0.94928 0.81227 0.88894 1.86366 1.55419 1.76903 1.18870 1.22464 0.95323 0.93474 0.99922 0.86951 1.21125 0.88375 0.91195 0.96333 1.45840 1.35033 1.27102 1.26499 1.16810 0.81113 0.80520 0.83601 1.90858 1.60352 1.69309 1.22834 1.27240 1.04104 1.03386 0.96933 1.66175 1.07196 1.28263 1.13975 1.20562 0.97226 0.95508 0.95007 1.98415 1.69537 1.97083 1.32732 1.27165 1.08367 1.04681 0.98973 1.83992 1.18915 1.18806 1.16991 1.21416 0.94662 0.84939 0.97352 0.94285 0.90152 0.98045 0.76175 0.89726 0.91957 0.74770 0.75259 0.95684 0.96802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.41 10.11 21.65 0.22 -55.19 16 2 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 3 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.24 -13.50 10.28 84.03 0.86 -12.63 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.62 -32.05 3.41 -691.17 -2.35 -34.40 16 10 C 0.13 5.91 5.65 86.79 0.49 6.40 16 11 C 0.10 3.37 4.17 31.99 0.13 3.51 16 12 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 13 O -0.57 -19.99 12.22 -148.98 -1.82 -21.81 16 14 C -0.09 -3.00 2.95 -9.60 -0.03 -3.03 16 15 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 16 C 0.15 4.55 4.59 86.38 0.40 4.94 16 17 N -0.69 -19.00 5.40 -466.56 -2.52 -21.51 16 18 C 0.60 16.60 7.81 86.60 0.68 17.27 16 19 O -0.55 -17.95 16.94 -4.12 -0.07 -18.02 16 20 C -0.04 -0.99 7.46 87.24 0.65 -0.33 16 21 N -0.44 -10.21 10.24 -181.16 -1.86 -12.07 16 22 C 0.08 1.54 7.22 83.97 0.61 2.15 16 23 Cl -0.01 -0.10 29.20 -2.72 -0.08 -0.18 16 24 C -0.25 -3.02 10.93 66.93 0.73 -2.29 16 25 S 0.36 5.11 23.03 -56.49 -1.30 3.80 16 26 C 0.14 5.90 6.52 86.73 0.57 6.47 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.08 4.30 5.88 -2.39 -0.01 4.29 16 29 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.39 11.12 9.12 -74.05 -0.68 10.45 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.06 2.19 7.44 -2.39 -0.02 2.18 16 33 H 0.42 10.75 7.98 -92.71 -0.74 10.01 16 34 H 0.23 0.98 8.06 -2.91 -0.02 0.95 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.01 0.62 7.76 -2.39 -0.02 0.60 16 Total: -1.00 -71.94 337.54 -2.46 -74.40 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.26 Total: 17.60 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 5.55 Total: 19.27 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.51 Total: -123.17 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.89 Total: -39.83 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -1.30 Total: 3.80 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.18 kcal Total: -71.94 -2.46 -74.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958328307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.789 kcal (2) G-P(sol) polarization free energy of solvation -71.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds