Wall clock time and date at job start Tue Mar 31 2020 16:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00399 * 2 1 4 4 H 1.48497 * 109.47433 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47084 * 300.00309 * 3 2 1 6 6 H 1.48495 * 109.47048 * 60.00175 * 3 2 1 7 7 C 1.38812 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00181 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00297 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.65062 * 359.97438 * 9 7 2 11 11 C 1.54906 * 104.83383 * 155.90574 * 10 9 7 12 12 H 1.09002 * 111.00655 * 278.93745 * 11 10 9 13 13 O 1.42900 * 111.00076 * 155.12513 * 11 10 9 14 14 C 1.55156 * 101.61451 * 37.03345 * 11 10 9 15 15 H 1.09001 * 110.72614 * 82.84221 * 14 11 10 16 16 C 1.53006 * 110.71827 * 206.11493 * 14 11 10 17 17 N 1.46493 * 109.47223 * 184.99960 * 16 14 11 18 18 C 1.34779 * 120.00002 * 179.97438 * 17 16 14 19 19 O 1.21615 * 120.00202 * 0.02562 * 18 17 16 20 20 C 1.47230 * 119.99821 * 180.02562 * 18 17 16 21 21 N 1.30602 * 125.53264 * 359.69650 * 20 18 17 22 22 C 1.30747 * 115.89648 * 179.78092 * 21 20 18 23 23 Cl 1.73595 * 122.12029 * 180.22181 * 22 21 20 24 24 C 1.34332 * 115.75360 * 0.51826 * 22 21 20 25 25 S 1.71071 * 109.09737 * 359.72330 * 24 22 21 26 26 C 1.47023 * 125.65042 * 180.02562 * 9 7 2 27 27 H 0.97004 * 120.00021 * 359.97438 * 1 2 3 28 28 H 1.09008 * 110.36125 * 37.06814 * 10 9 7 29 29 H 1.08997 * 110.36558 * 274.74822 * 10 9 7 30 30 H 0.96703 * 114.00351 * 64.58232 * 13 11 10 31 31 H 1.09001 * 109.46851 * 304.99684 * 16 14 11 32 32 H 1.08996 * 109.46864 * 64.99885 * 16 14 11 33 33 H 0.97006 * 120.00284 * 0.02562 * 17 16 14 34 34 H 1.07996 * 125.45161 * 179.69109 * 24 22 21 35 35 H 1.08996 * 109.87999 * 300.43720 * 26 9 7 36 36 H 1.08994 * 109.88372 * 61.45250 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5332 0.0005 11 6 -0.4023 -3.9323 -0.6112 12 1 -0.3534 -3.8981 -1.6996 13 8 -1.6575 -4.4568 -0.1738 14 6 0.7775 -4.7533 -0.0270 15 1 0.5455 -5.0988 0.9805 16 6 1.1207 -5.9325 -0.9396 17 7 2.1541 -6.7554 -0.3064 18 6 2.6157 -7.8565 -0.9317 19 8 2.1747 -8.1667 -2.0218 20 6 3.6539 -8.6839 -0.2951 21 7 4.2055 -8.4495 0.8653 22 6 5.1079 -9.3124 1.2534 23 17 5.9385 -9.1602 2.7701 24 6 5.3559 -10.3207 0.4011 25 16 4.3589 -10.1459 -0.9780 26 6 1.9316 -3.7275 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5999 -1.7588 -0.6148 29 1 -0.5267 -2.4868 1.0192 30 1 -2.4227 -3.9473 -0.4737 31 1 0.2278 -6.5351 -1.1059 32 1 1.4892 -5.5576 -1.8944 33 1 2.5057 -6.5083 0.5633 34 1 6.0707 -11.1143 0.5608 35 1 2.5575 -3.8511 -0.8843 36 1 2.5307 -3.8633 0.8998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958328309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:53 Heat of formation + Delta-G solvation = -12.407088 kcal Electronic energy + Delta-G solvation = -23079.924574 eV Core-core repulsion = 19332.042713 eV Total energy + Delta-G solvation = -3747.881862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57126 -39.42765 -38.19978 -36.90679 -35.23785 -34.74954 -32.37883 -31.13592 -29.66002 -27.71466 -26.87712 -25.39653 -23.59540 -22.17628 -20.68541 -20.11217 -19.81850 -18.99444 -17.57465 -17.03062 -16.72406 -16.07819 -15.98270 -15.77117 -15.13826 -14.82447 -14.30606 -14.14397 -13.85507 -13.66330 -13.09380 -12.91238 -12.54628 -12.42518 -12.04194 -11.97974 -11.60716 -11.46093 -11.26859 -10.99436 -10.84951 -10.83443 -10.65385 -10.32073 -10.26909 -10.05939 -9.91299 -9.68095 -9.30190 -9.21106 -9.05551 -8.72676 -6.92537 -5.73103 -3.15397 -0.29870 0.53862 0.81891 1.74082 1.79760 2.86210 2.97809 3.36472 3.42293 3.44654 3.88978 4.39872 4.46858 4.58914 4.69271 4.95580 5.09932 5.18039 5.42216 5.46571 5.63615 5.88494 5.95541 6.01600 6.15918 6.24208 6.38791 6.57396 6.74610 6.78990 7.31717 7.33483 7.53581 7.72272 7.89838 8.13603 8.26938 9.13389 9.74143 10.37028 11.31116 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.002753 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.949654 B =10169.577667 C =11319.281809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.128 3.872 11 C 0.082 3.918 12 H 0.062 0.938 13 O -0.569 6.569 14 C -0.106 4.106 15 H 0.088 0.912 16 C 0.132 3.868 17 N -0.692 5.692 18 C 0.596 3.404 19 O -0.527 6.527 20 C 0.001 3.999 21 N -0.419 5.419 22 C 0.110 3.890 23 Cl -0.004 7.004 24 C -0.277 4.277 25 S 0.297 5.703 26 C 0.140 3.860 27 H 0.252 0.748 28 H 0.110 0.890 29 H 0.022 0.978 30 H 0.378 0.622 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.413 0.587 34 H 0.195 0.805 35 H 0.029 0.971 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.495 -21.784 -0.258 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.002 3.998 11 C 0.021 3.979 12 H 0.080 0.920 13 O -0.374 6.374 14 C -0.125 4.125 15 H 0.107 0.893 16 C 0.009 3.991 17 N -0.343 5.343 18 C 0.376 3.624 19 O -0.403 6.403 20 C -0.275 4.275 21 N -0.138 5.138 22 C -0.055 4.055 23 Cl 0.024 6.976 24 C -0.419 4.419 25 S 0.552 5.448 26 C 0.014 3.986 27 H 0.063 0.937 28 H 0.128 0.872 29 H 0.040 0.960 30 H 0.225 0.775 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.250 0.750 34 H 0.212 0.788 35 H 0.047 0.953 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 7.265 -22.273 -1.285 23.463 hybrid contribution 1.011 1.478 1.491 2.331 sum 8.276 -20.795 0.206 22.382 Atomic orbital electron populations 1.69765 1.04942 1.24816 1.57634 1.24800 0.95772 0.97845 1.02221 0.85963 0.78684 0.83367 0.77276 1.20462 1.21677 1.21690 1.19145 0.90608 0.82232 1.43148 0.90202 1.44323 1.01589 0.99842 1.87060 1.22565 0.85420 0.92500 0.99293 1.23303 0.82090 0.95490 0.96971 0.92023 1.86364 1.15901 1.56171 1.79006 1.22436 0.96357 0.94007 0.99687 0.89332 1.21616 0.90014 0.91111 0.96391 1.45850 1.40367 1.24738 1.23353 1.16590 0.80433 0.80784 0.84553 1.90880 1.58692 1.71155 1.19579 1.27656 1.04087 1.00980 0.94808 1.66277 1.07894 1.27159 1.12511 1.20410 0.98193 0.93734 0.93152 1.98420 1.74638 1.97725 1.26839 1.26666 1.09382 1.05794 1.00059 1.84161 1.26403 1.19356 1.14920 1.21410 0.93231 0.85436 0.98516 0.93678 0.87247 0.95967 0.77534 0.90463 0.90541 0.75037 0.78806 0.95294 0.95530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.25 10.09 55.49 0.56 -25.69 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.01 3.39 -170.01 -0.58 -15.59 16 10 C 0.13 3.00 5.62 -2.53 -0.01 2.98 16 11 C 0.08 1.51 3.87 -24.58 -0.10 1.42 16 12 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 13 O -0.57 -9.57 13.47 -35.23 -0.47 -10.04 16 14 C -0.11 -1.80 2.70 -88.73 -0.24 -2.04 16 15 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 16 C 0.13 1.95 5.02 -4.04 -0.02 1.93 16 17 N -0.69 -9.45 5.47 -61.45 -0.34 -9.78 16 18 C 0.60 8.22 7.81 -12.61 -0.10 8.12 16 19 O -0.53 -8.38 16.94 5.26 0.09 -8.29 16 20 C 0.00 0.01 7.46 -14.42 -0.11 -0.10 16 21 N -0.42 -5.05 10.25 -8.61 -0.09 -5.14 16 22 C 0.11 1.12 7.22 -19.39 -0.14 0.98 16 23 Cl 0.00 -0.04 29.20 -51.86 -1.51 -1.56 16 24 C -0.28 -2.07 10.93 29.35 0.32 -1.75 16 25 S 0.30 2.43 23.03 -107.50 -2.48 -0.04 16 26 C 0.14 2.81 6.76 -3.01 -0.02 2.79 16 27 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.11 2.85 5.87 -51.92 -0.31 2.54 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.38 4.94 9.12 45.56 0.42 5.35 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.17 7.94 -51.93 -0.41 0.76 16 33 H 0.41 5.36 8.13 -40.82 -0.33 5.02 16 34 H 0.19 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.03 0.58 7.69 -51.93 -0.40 0.18 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -31.84 339.41 -8.50 -40.34 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.11 Total: 6.26 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.67 Total: 7.67 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.44 Total: -56.20 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.39 Total: -18.33 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.48 Total: -0.04 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.51 Total: -1.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.84 -8.50 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958328309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.931 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds