Wall clock time and date at job start Tue Mar 31 2020 16:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00399 * 2 1 4 4 H 1.48497 * 109.47433 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47084 * 300.00309 * 3 2 1 6 6 H 1.48495 * 109.47048 * 60.00175 * 3 2 1 7 7 C 1.38812 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00181 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00297 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.65062 * 359.97438 * 9 7 2 11 11 C 1.54906 * 104.83383 * 155.90574 * 10 9 7 12 12 H 1.09002 * 111.00655 * 278.93745 * 11 10 9 13 13 O 1.42900 * 111.00076 * 155.12513 * 11 10 9 14 14 C 1.55156 * 101.61451 * 37.03345 * 11 10 9 15 15 H 1.09001 * 110.72614 * 82.84221 * 14 11 10 16 16 C 1.53006 * 110.71827 * 206.11493 * 14 11 10 17 17 N 1.46493 * 109.47223 * 184.99960 * 16 14 11 18 18 C 1.34779 * 120.00002 * 179.97438 * 17 16 14 19 19 O 1.21615 * 120.00202 * 0.02562 * 18 17 16 20 20 C 1.47230 * 119.99821 * 180.02562 * 18 17 16 21 21 N 1.30602 * 125.53264 * 359.69650 * 20 18 17 22 22 C 1.30747 * 115.89648 * 179.78092 * 21 20 18 23 23 Cl 1.73595 * 122.12029 * 180.22181 * 22 21 20 24 24 C 1.34332 * 115.75360 * 0.51826 * 22 21 20 25 25 S 1.71071 * 109.09737 * 359.72330 * 24 22 21 26 26 C 1.47023 * 125.65042 * 180.02562 * 9 7 2 27 27 H 0.97004 * 120.00021 * 359.97438 * 1 2 3 28 28 H 1.09008 * 110.36125 * 37.06814 * 10 9 7 29 29 H 1.08997 * 110.36558 * 274.74822 * 10 9 7 30 30 H 0.96703 * 114.00351 * 64.58232 * 13 11 10 31 31 H 1.09001 * 109.46851 * 304.99684 * 16 14 11 32 32 H 1.08996 * 109.46864 * 64.99885 * 16 14 11 33 33 H 0.97006 * 120.00284 * 0.02562 * 17 16 14 34 34 H 1.07996 * 125.45161 * 179.69109 * 24 22 21 35 35 H 1.08996 * 109.87999 * 300.43720 * 26 9 7 36 36 H 1.08994 * 109.88372 * 61.45250 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1417 -2.5332 0.0005 11 6 -0.4023 -3.9323 -0.6112 12 1 -0.3534 -3.8981 -1.6996 13 8 -1.6575 -4.4568 -0.1738 14 6 0.7775 -4.7533 -0.0270 15 1 0.5455 -5.0988 0.9805 16 6 1.1207 -5.9325 -0.9396 17 7 2.1541 -6.7554 -0.3064 18 6 2.6157 -7.8565 -0.9317 19 8 2.1747 -8.1667 -2.0218 20 6 3.6539 -8.6839 -0.2951 21 7 4.2055 -8.4495 0.8653 22 6 5.1079 -9.3124 1.2534 23 17 5.9385 -9.1602 2.7701 24 6 5.3559 -10.3207 0.4011 25 16 4.3589 -10.1459 -0.9780 26 6 1.9316 -3.7275 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 -0.5999 -1.7588 -0.6148 29 1 -0.5267 -2.4868 1.0192 30 1 -2.4227 -3.9473 -0.4737 31 1 0.2278 -6.5351 -1.1059 32 1 1.4892 -5.5576 -1.8944 33 1 2.5057 -6.5083 0.5633 34 1 6.0707 -11.1143 0.5608 35 1 2.5575 -3.8511 -0.8843 36 1 2.5307 -3.8633 0.8998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958328309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:52 Heat of formation + Delta-G solvation = -37.650953 kcal Electronic energy + Delta-G solvation = -23081.019230 eV Core-core repulsion = 19332.042713 eV Total energy + Delta-G solvation = -3748.976518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45607 -40.46950 -39.68058 -37.61869 -36.65290 -36.21273 -34.09861 -32.17135 -31.10044 -29.33419 -27.97096 -26.98236 -25.09322 -23.16342 -22.27636 -21.49288 -20.92937 -19.86424 -18.96688 -18.48861 -18.14403 -17.15970 -17.01478 -16.87572 -16.63719 -16.00673 -15.70046 -15.47923 -15.10015 -14.76448 -14.61959 -14.36363 -14.03497 -13.67272 -13.29983 -13.21667 -13.11125 -12.78545 -12.77490 -12.40173 -12.31433 -12.16183 -11.94498 -11.85996 -11.82699 -11.35613 -11.11737 -10.96122 -10.83667 -10.74436 -10.31522 -9.88651 -8.93192 -7.80649 -5.25760 -1.04059 -0.15068 0.10260 0.93026 1.10356 1.47492 1.47710 1.58260 1.90536 1.98214 2.47017 2.99225 3.21671 3.30013 3.57893 3.69763 3.75648 3.89839 4.00490 4.09956 4.37455 4.42728 4.45850 4.59140 4.71077 4.86545 4.94395 5.14281 5.28928 5.42833 5.47904 5.73096 5.96310 6.24244 6.29770 6.85819 6.89660 7.07283 7.72943 8.35480 9.21364 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.002753 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.949654 B =10169.577667 C =11319.281809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.065 4.065 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.623 5.623 10 C 0.132 3.868 11 C 0.099 3.901 12 H 0.073 0.927 13 O -0.569 6.569 14 C -0.089 4.089 15 H 0.090 0.910 16 C 0.145 3.855 17 N -0.693 5.693 18 C 0.599 3.401 19 O -0.553 6.553 20 C -0.044 4.044 21 N -0.436 5.436 22 C 0.081 3.919 23 Cl -0.006 7.006 24 C -0.249 4.249 25 S 0.361 5.639 26 C 0.139 3.861 27 H 0.248 0.752 28 H 0.081 0.919 29 H -0.009 1.009 30 H 0.395 0.605 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.231 0.769 35 H 0.034 0.966 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.888 -23.874 -0.685 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.007 3.993 11 C 0.039 3.961 12 H 0.090 0.910 13 O -0.376 6.376 14 C -0.108 4.108 15 H 0.108 0.892 16 C 0.022 3.978 17 N -0.344 5.344 18 C 0.381 3.619 19 O -0.432 6.432 20 C -0.317 4.317 21 N -0.156 5.156 22 C -0.083 4.083 23 Cl 0.022 6.978 24 C -0.392 4.392 25 S 0.615 5.385 26 C 0.014 3.986 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.009 0.991 30 H 0.244 0.756 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.253 0.747 34 H 0.247 0.753 35 H 0.052 0.948 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.656 -24.380 -1.708 25.927 hybrid contribution 0.631 2.011 1.638 2.669 sum 9.287 -22.369 -0.070 24.220 Atomic orbital electron populations 1.70001 1.06144 1.25098 1.58473 1.25622 0.96686 1.00959 1.02486 0.84970 0.78080 0.79266 0.76763 1.19207 1.21623 1.21997 1.19494 0.91077 0.83551 1.42736 0.89981 1.44606 1.02422 1.00996 1.87007 1.22355 0.84761 0.94958 0.97270 1.22968 0.83384 0.92675 0.97113 0.90963 1.86340 1.15921 1.56147 1.79161 1.22256 0.94458 0.93830 1.00306 0.89151 1.21351 0.90675 0.90323 0.95480 1.45771 1.40222 1.24894 1.23475 1.16783 0.80416 0.80522 0.84135 1.90854 1.59825 1.71856 1.20660 1.27230 1.05406 1.03207 0.95864 1.66182 1.08330 1.28226 1.12898 1.20562 0.99044 0.94754 0.93962 1.98416 1.74576 1.97806 1.27005 1.27164 1.08278 1.05057 0.98690 1.83989 1.24554 1.16212 1.13773 1.21538 0.94296 0.84114 0.98659 0.94192 0.90094 0.99073 0.75564 0.89925 0.90857 0.74689 0.75284 0.94777 0.95251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.34 10.09 21.65 0.22 -55.12 16 2 C -0.06 -3.63 5.49 84.86 0.47 -3.17 16 3 Si 0.98 45.21 29.55 68.60 2.03 47.24 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.24 -13.31 10.27 84.03 0.86 -12.45 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.62 -31.64 3.39 -691.78 -2.35 -33.99 16 10 C 0.13 6.37 5.62 86.85 0.49 6.86 16 11 C 0.10 3.63 3.87 31.98 0.12 3.75 16 12 H 0.07 2.53 8.05 -2.39 -0.02 2.51 16 13 O -0.57 -18.47 13.47 -148.98 -2.01 -20.48 16 14 C -0.09 -2.99 2.70 -9.57 -0.03 -3.01 16 15 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 16 C 0.15 4.15 5.02 86.38 0.43 4.58 16 17 N -0.69 -18.39 5.47 -466.58 -2.55 -20.95 16 18 C 0.60 16.02 7.81 86.61 0.68 16.69 16 19 O -0.55 -17.11 16.94 -4.08 -0.07 -17.18 16 20 C -0.04 -0.96 7.46 87.24 0.65 -0.31 16 21 N -0.44 -10.01 10.25 -181.16 -1.86 -11.86 16 22 C 0.08 1.51 7.22 83.96 0.61 2.11 16 23 Cl -0.01 -0.11 29.20 -2.72 -0.08 -0.19 16 24 C -0.25 -2.91 10.93 66.93 0.73 -2.18 16 25 S 0.36 4.90 23.03 -56.49 -1.30 3.60 16 26 C 0.14 5.57 6.76 86.76 0.59 6.16 16 27 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 28 H 0.08 4.37 5.87 -2.38 -0.01 4.36 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.39 9.89 9.12 -74.06 -0.68 9.22 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.17 7.94 -2.39 -0.02 2.15 16 33 H 0.42 10.58 8.13 -92.70 -0.75 9.82 16 34 H 0.23 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.03 1.34 7.69 -2.39 -0.02 1.32 16 36 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.71 339.41 -2.64 -72.34 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -0.27 Total: 17.53 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 5.60 Total: 19.04 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -6.54 Total: -121.91 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -2.08 Total: -37.65 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -1.30 Total: 3.60 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -69.71 -2.64 -72.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958328309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.694 kcal (2) G-P(sol) polarization free energy of solvation -69.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds