Wall clock time and date at job start Tue Mar 31 2020 16:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47426 * 299.99938 * 3 2 1 6 6 H 1.48497 * 109.47269 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 H 1.09001 * 111.03628 * 155.18095 * 11 10 9 13 13 O 1.42891 * 111.00999 * 279.02161 * 11 10 9 14 14 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 15 15 H 1.08995 * 110.87585 * 82.93006 * 14 11 10 16 16 C 1.53006 * 110.71889 * 206.13300 * 14 11 10 17 17 N 1.46500 * 109.46719 * 179.97438 * 16 14 11 18 18 C 1.34781 * 119.99697 * 180.02562 * 17 16 14 19 19 O 1.21637 * 119.99515 * 359.97438 * 18 17 16 20 20 C 1.47243 * 119.99909 * 179.97438 * 18 17 16 21 21 C 1.35151 * 123.13355 * 179.97438 * 20 18 17 22 22 S 1.70933 * 108.86021 * 179.97438 * 21 20 18 23 23 C 1.70767 * 91.14801 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 124.72612 * 180.02562 * 23 22 21 25 25 N 1.28770 * 110.54596 * 359.76333 * 23 22 21 26 26 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 27 27 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 28 28 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 29 29 H 1.08996 * 110.53057 * 274.75420 * 10 9 7 30 30 H 0.96705 * 114.00245 * 292.19608 * 13 11 10 31 31 H 1.08996 * 109.46429 * 299.97004 * 16 14 11 32 32 H 1.08997 * 109.47048 * 59.97457 * 16 14 11 33 33 H 0.97000 * 120.00631 * 359.97438 * 17 16 14 34 34 H 1.07995 * 125.57313 * 359.96364 * 21 20 18 35 35 H 1.09002 * 109.88367 * 61.61048 * 26 9 7 36 36 H 1.09000 * 109.88319 * 300.59666 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 1 -1.3579 -4.3402 -0.2796 13 8 -0.3374 -3.8893 -2.0391 14 6 0.7805 -4.7551 -0.0292 15 1 0.5514 -5.1052 0.9772 16 6 1.1275 -5.9317 -0.9437 17 7 2.2453 -6.6840 -0.3686 18 6 2.7257 -7.7699 -1.0062 19 8 2.2308 -8.1254 -2.0590 20 6 3.8495 -8.5257 -0.4285 21 6 4.3801 -9.6227 -1.0130 22 16 5.6573 -10.2054 -0.0378 23 6 5.4098 -8.9519 1.0952 24 17 6.3373 -8.7331 2.5463 25 7 4.4429 -8.1884 0.7205 26 6 1.9316 -3.7276 -0.0005 27 1 -0.4849 0.8401 0.0004 28 1 -0.6042 -1.7636 -0.6122 29 1 -0.5315 -2.4935 1.0198 30 1 -1.0559 -3.3884 -2.4488 31 1 0.2606 -6.5853 -1.0394 32 1 1.4100 -5.5564 -1.9273 33 1 2.6402 -6.4002 0.4708 34 1 4.0509 -10.0599 -1.9440 35 1 2.5285 -3.8644 0.9012 36 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958567416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:56 Heat of formation + Delta-G solvation = -11.639014 kcal Electronic energy + Delta-G solvation = -23293.583701 eV Core-core repulsion = 19545.735145 eV Total energy + Delta-G solvation = -3747.848556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.76487 -39.02058 -38.10101 -37.30531 -34.92791 -34.49963 -32.16689 -30.94182 -29.74478 -27.83494 -26.45741 -25.24183 -23.75224 -22.37586 -20.55397 -20.09916 -19.70142 -19.07911 -17.29931 -17.02451 -16.58681 -16.18572 -15.85646 -15.40744 -14.85692 -14.77440 -14.38296 -14.14508 -13.93370 -13.75928 -13.21673 -12.69621 -12.44045 -12.36366 -12.19865 -11.91604 -11.88359 -11.36018 -11.22955 -10.80576 -10.63632 -10.51722 -10.35249 -10.32368 -10.17333 -10.03079 -9.86389 -9.80197 -9.38249 -9.09643 -8.89869 -8.67118 -6.82104 -5.67569 -3.06938 -0.02940 0.23337 0.99808 1.38300 1.53631 3.16681 3.21871 3.39927 3.45687 3.48035 3.95151 4.48147 4.72536 4.75440 4.80371 5.14469 5.27687 5.33302 5.43314 5.53398 5.62287 5.91939 6.04990 6.13171 6.34561 6.43714 6.48733 6.66351 6.76908 6.88302 7.29346 7.54760 7.59734 7.76524 8.14119 8.24686 8.38443 9.20069 9.81648 10.46149 11.37861 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.002818 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.014325 B = 9933.604589 C =11261.057201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.126 3.874 11 C 0.083 3.917 12 H 0.055 0.945 13 O -0.557 6.557 14 C -0.106 4.106 15 H 0.086 0.914 16 C 0.139 3.861 17 N -0.704 5.704 18 C 0.591 3.409 19 O -0.534 6.534 20 C 0.026 3.974 21 C -0.223 4.223 22 S 0.278 5.722 23 C 0.046 3.954 24 Cl 0.034 6.966 25 N -0.428 5.428 26 C 0.144 3.856 27 H 0.251 0.749 28 H 0.112 0.888 29 H 0.020 0.980 30 H 0.375 0.625 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.410 0.590 34 H 0.200 0.800 35 H 0.020 0.980 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.467 -22.561 1.839 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.344 4.344 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.001 3.999 11 C 0.022 3.978 12 H 0.073 0.927 13 O -0.363 6.363 14 C -0.126 4.126 15 H 0.105 0.895 16 C 0.016 3.984 17 N -0.354 5.354 18 C 0.373 3.627 19 O -0.411 6.411 20 C -0.109 4.109 21 C -0.365 4.365 22 S 0.530 5.470 23 C -0.259 4.259 24 Cl 0.062 6.938 25 N -0.146 5.146 26 C 0.018 3.982 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.037 0.963 30 H 0.222 0.778 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.217 0.783 35 H 0.038 0.962 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 9.237 -23.226 1.633 25.049 hybrid contribution -0.489 1.983 0.366 2.075 sum 8.748 -21.243 1.999 23.060 Atomic orbital electron populations 1.69753 1.04900 1.24619 1.58240 1.24757 0.95757 0.97689 1.02615 0.85979 0.78684 0.83542 0.77203 1.20543 1.21749 1.21808 1.19143 0.90552 0.82395 1.42339 0.90417 1.44417 1.01483 0.99745 1.86689 1.22628 0.85742 0.92957 0.98601 1.23184 0.95074 0.98104 0.81394 0.92718 1.86388 1.54210 1.76747 1.18939 1.22511 0.97472 0.94317 0.98280 0.89529 1.21340 0.87691 0.91496 0.97904 1.45974 1.35398 1.27595 1.26457 1.16921 0.81275 0.80542 0.83976 1.90835 1.59530 1.68720 1.22048 1.20337 1.00903 0.97545 0.92111 1.26821 1.01456 1.00940 1.07310 1.82965 1.28117 1.25681 1.10205 1.27178 1.00050 0.99814 0.98818 1.98454 1.68037 1.96575 1.30747 1.66694 1.07038 1.27597 1.13303 1.21304 0.93341 0.85618 0.97935 0.93834 0.87072 0.96256 0.77803 0.91466 0.89759 0.75436 0.78336 0.96210 0.95417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.75 10.11 55.49 0.56 -26.19 16 2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 3 Si 0.92 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.22 -6.10 10.28 -15.05 -0.15 -6.26 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.41 3.41 -169.81 -0.58 -15.99 16 10 C 0.13 2.98 5.65 -2.35 -0.01 2.97 16 11 C 0.08 1.54 4.17 -24.58 -0.10 1.44 16 12 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 13 O -0.56 -10.36 12.22 -35.23 -0.43 -10.79 16 14 C -0.11 -1.86 2.95 -88.78 -0.26 -2.12 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 16 C 0.14 2.26 4.59 -4.04 -0.02 2.24 16 17 N -0.70 -10.53 5.40 -61.44 -0.33 -10.86 16 18 C 0.59 8.95 7.80 -12.60 -0.10 8.85 16 19 O -0.53 -9.39 16.71 5.24 0.09 -9.30 16 20 C 0.03 0.33 6.70 -84.52 -0.57 -0.24 16 21 C -0.22 -2.07 10.61 29.63 0.31 -1.76 16 22 S 0.28 1.86 22.96 -107.50 -2.47 -0.61 16 23 C 0.05 0.45 7.98 51.48 0.41 0.86 16 24 Cl 0.03 0.29 29.33 -51.86 -1.52 -1.23 16 25 N -0.43 -5.24 10.13 -9.45 -0.10 -5.34 16 26 C 0.14 3.07 6.52 -3.06 -0.02 3.05 16 27 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.11 2.93 5.88 -51.93 -0.31 2.63 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.38 5.68 9.12 45.56 0.42 6.09 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.58 7.44 -51.93 -0.39 1.19 16 33 H 0.41 5.80 7.85 -40.82 -0.32 5.48 16 34 H 0.20 1.55 8.03 -52.49 -0.42 1.12 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.03 0.62 7.76 -51.93 -0.40 0.22 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -33.41 336.78 -8.41 -41.82 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.08 Total: 7.60 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.61 Total: 8.56 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.44 Total: -58.38 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.34 Total: -20.09 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.47 Total: -0.61 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.52 Total: -1.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.41 -8.41 -41.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958567416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.177 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds