Wall clock time and date at job start Tue Mar 31 2020 16:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47426 * 299.99938 * 3 2 1 6 6 H 1.48497 * 109.47269 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 H 1.09001 * 111.03628 * 155.18095 * 11 10 9 13 13 O 1.42891 * 111.00999 * 279.02161 * 11 10 9 14 14 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 15 15 H 1.08995 * 110.87585 * 82.93006 * 14 11 10 16 16 C 1.53006 * 110.71889 * 206.13300 * 14 11 10 17 17 N 1.46500 * 109.46719 * 179.97438 * 16 14 11 18 18 C 1.34781 * 119.99697 * 180.02562 * 17 16 14 19 19 O 1.21637 * 119.99515 * 359.97438 * 18 17 16 20 20 C 1.47243 * 119.99909 * 179.97438 * 18 17 16 21 21 C 1.35151 * 123.13355 * 179.97438 * 20 18 17 22 22 S 1.70933 * 108.86021 * 179.97438 * 21 20 18 23 23 C 1.70767 * 91.14801 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 124.72612 * 180.02562 * 23 22 21 25 25 N 1.28770 * 110.54596 * 359.76333 * 23 22 21 26 26 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 27 27 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 28 28 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 29 29 H 1.08996 * 110.53057 * 274.75420 * 10 9 7 30 30 H 0.96705 * 114.00245 * 292.19608 * 13 11 10 31 31 H 1.08996 * 109.46429 * 299.97004 * 16 14 11 32 32 H 1.08997 * 109.47048 * 59.97457 * 16 14 11 33 33 H 0.97000 * 120.00631 * 359.97438 * 17 16 14 34 34 H 1.07995 * 125.57313 * 359.96364 * 21 20 18 35 35 H 1.09002 * 109.88367 * 61.61048 * 26 9 7 36 36 H 1.09000 * 109.88319 * 300.59666 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 1 -1.3579 -4.3402 -0.2796 13 8 -0.3374 -3.8893 -2.0391 14 6 0.7805 -4.7551 -0.0292 15 1 0.5514 -5.1052 0.9772 16 6 1.1275 -5.9317 -0.9437 17 7 2.2453 -6.6840 -0.3686 18 6 2.7257 -7.7699 -1.0062 19 8 2.2308 -8.1254 -2.0590 20 6 3.8495 -8.5257 -0.4285 21 6 4.3801 -9.6227 -1.0130 22 16 5.6573 -10.2054 -0.0378 23 6 5.4098 -8.9519 1.0952 24 17 6.3373 -8.7331 2.5463 25 7 4.4429 -8.1884 0.7205 26 6 1.9316 -3.7276 -0.0005 27 1 -0.4849 0.8401 0.0004 28 1 -0.6042 -1.7636 -0.6122 29 1 -0.5315 -2.4935 1.0198 30 1 -1.0559 -3.3884 -2.4488 31 1 0.2606 -6.5853 -1.0394 32 1 1.4100 -5.5564 -1.9273 33 1 2.6402 -6.4002 0.4708 34 1 4.0509 -10.0599 -1.9440 35 1 2.5285 -3.8644 0.9012 36 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958567416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:47 Heat of formation + Delta-G solvation = -38.449021 kcal Electronic energy + Delta-G solvation = -23294.746270 eV Core-core repulsion = 19545.735145 eV Total energy + Delta-G solvation = -3749.011125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 8.59 seconds Orbital eigenvalues (eV) -41.69889 -40.26188 -39.49346 -37.98750 -36.34251 -36.15624 -33.98449 -31.87356 -31.33092 -29.51697 -27.72491 -26.74325 -25.18251 -23.53396 -22.19867 -21.33372 -20.90897 -20.13418 -19.11828 -18.25553 -17.65194 -17.39829 -16.85742 -16.82412 -16.51770 -16.05878 -15.67268 -15.56160 -15.20295 -14.95447 -14.62160 -14.43533 -13.96040 -13.68527 -13.19049 -13.14284 -13.08207 -12.92752 -12.67065 -12.57067 -12.32192 -12.06224 -11.88493 -11.83205 -11.74942 -11.31855 -11.08983 -10.85256 -10.82713 -10.67121 -10.29078 -9.94991 -8.87086 -7.80186 -5.22299 -0.75274 -0.40681 0.29489 0.62802 0.70049 1.45317 1.46008 1.56297 2.08860 2.15323 2.47856 3.07372 3.27156 3.35236 3.58170 3.86347 3.91265 3.94153 4.00534 4.02773 4.41541 4.45677 4.59172 4.62692 4.80299 4.88920 4.99002 5.25453 5.32268 5.38668 5.49387 5.75842 5.96121 6.27416 6.42781 6.96318 7.01098 7.10032 7.75901 8.39589 9.22498 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.002818 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.014325 B = 9933.604589 C =11261.057201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.620 5.620 10 C 0.126 3.874 11 C 0.096 3.904 12 H 0.093 0.907 13 O -0.569 6.569 14 C -0.092 4.092 15 H 0.111 0.889 16 C 0.154 3.846 17 N -0.704 5.704 18 C 0.590 3.410 19 O -0.566 6.566 20 C -0.005 4.005 21 C -0.223 4.223 22 S 0.392 5.608 23 C 0.019 3.981 24 Cl 0.038 6.962 25 N -0.457 5.457 26 C 0.143 3.857 27 H 0.248 0.752 28 H 0.081 0.919 29 H 0.002 0.998 30 H 0.389 0.611 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.414 0.586 34 H 0.213 0.787 35 H 0.025 0.975 36 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.556 -24.629 2.067 26.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.367 4.367 8 H 0.092 0.908 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.036 3.964 12 H 0.110 0.890 13 O -0.376 6.376 14 C -0.111 4.111 15 H 0.129 0.871 16 C 0.030 3.970 17 N -0.353 5.353 18 C 0.374 3.626 19 O -0.445 6.445 20 C -0.140 4.140 21 C -0.366 4.366 22 S 0.644 5.356 23 C -0.285 4.285 24 Cl 0.065 6.935 25 N -0.176 5.176 26 C 0.018 3.982 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.020 0.980 30 H 0.238 0.762 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.250 0.750 34 H 0.230 0.770 35 H 0.043 0.957 36 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 10.347 -25.320 1.880 27.417 hybrid contribution -0.726 2.527 0.283 2.645 sum 9.621 -22.792 2.164 24.834 Atomic orbital electron populations 1.69986 1.05959 1.24961 1.58710 1.25557 0.96730 1.00691 1.02702 0.85001 0.77947 0.79463 0.76858 1.19580 1.21717 1.21648 1.19441 0.90834 0.83925 1.42469 0.90779 1.44721 1.02653 1.00604 1.86638 1.22511 0.84557 0.95395 0.97426 1.23067 0.97141 0.95030 0.81210 0.88955 1.86373 1.55397 1.76911 1.18917 1.22450 0.95361 0.93504 0.99818 0.87092 1.21036 0.88540 0.91196 0.96199 1.45906 1.35191 1.27657 1.26592 1.17286 0.81581 0.80243 0.83476 1.90803 1.60818 1.69578 1.23345 1.19936 1.01588 0.99056 0.93433 1.27196 1.01753 0.99779 1.07865 1.82623 1.24570 1.21893 1.06471 1.27486 1.00071 1.01111 0.99799 1.98454 1.67633 1.96705 1.30698 1.66596 1.08218 1.29115 1.13681 1.21387 0.94607 0.84965 0.97238 0.94250 0.90097 0.97987 0.76189 0.90282 0.92432 0.74973 0.77008 0.95711 0.97003 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 237. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.84 10.11 21.65 0.22 -55.62 16 2 C -0.06 -3.68 5.49 84.86 0.47 -3.22 16 3 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.24 -13.70 10.28 84.03 0.86 -12.84 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.62 -32.59 3.41 -691.17 -2.35 -34.94 16 10 C 0.13 6.06 5.65 86.79 0.49 6.55 16 11 C 0.10 3.47 4.17 31.99 0.13 3.60 16 12 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 13 O -0.57 -20.79 12.22 -148.98 -1.82 -22.61 16 14 C -0.09 -3.13 2.95 -9.60 -0.03 -3.16 16 15 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 16 C 0.15 4.91 4.59 86.38 0.40 5.30 16 17 N -0.70 -20.80 5.40 -466.53 -2.52 -23.31 16 18 C 0.59 17.71 7.80 86.61 0.68 18.38 16 19 O -0.57 -19.81 16.71 -4.15 -0.07 -19.88 16 20 C -0.01 -0.12 6.70 40.52 0.27 0.15 16 21 C -0.22 -3.66 10.61 67.11 0.71 -2.95 16 22 S 0.39 3.97 22.96 -56.49 -1.30 2.67 16 23 C 0.02 0.33 7.98 130.69 1.04 1.37 16 24 Cl 0.04 0.59 29.33 -2.72 -0.08 0.51 16 25 N -0.46 -10.75 10.13 -183.81 -1.86 -12.61 16 26 C 0.14 6.16 6.52 86.73 0.57 6.73 16 27 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.08 4.39 5.88 -2.39 -0.01 4.38 16 29 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.39 11.56 9.12 -74.05 -0.68 10.89 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 32 H 0.06 2.17 7.44 -2.39 -0.02 2.15 16 33 H 0.41 11.57 7.85 -92.71 -0.73 10.84 16 34 H 0.21 2.79 8.03 -2.91 -0.02 2.77 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.01 0.55 7.76 -2.39 -0.02 0.53 16 Total: -1.00 -73.96 336.78 -2.41 -76.38 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.25 Total: 21.10 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 5.59 Total: 19.93 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -6.51 Total: -126.48 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.89 Total: -42.49 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.30 Total: 2.67 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.08 Total: 0.51 kcal Total: -73.96 -2.41 -76.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958567416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.927 kcal (2) G-P(sol) polarization free energy of solvation -73.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.59 seconds