Wall clock time and date at job start Tue Mar 31 2020 16:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48505 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47275 * 299.99959 * 3 2 1 6 6 H 1.48505 * 109.47472 * 60.00220 * 3 2 1 7 7 C 1.38807 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00133 * 34.47831 * 7 2 1 9 9 N 1.36934 * 119.99844 * 214.47890 * 7 2 1 10 10 C 1.47429 * 125.64813 * 206.01097 * 9 7 2 11 11 C 1.54909 * 104.83047 * 204.09541 * 10 9 7 12 12 H 1.08995 * 111.00897 * 81.10656 * 11 10 9 13 13 C 1.53004 * 110.99995 * 204.91609 * 11 10 9 14 14 N 1.46503 * 109.47240 * 293.54241 * 13 11 10 15 15 C 1.34779 * 119.99920 * 179.97438 * 14 13 11 16 16 O 1.21633 * 120.00124 * 0.02562 * 15 14 13 17 17 C 1.47246 * 119.99576 * 180.02562 * 15 14 13 18 18 C 1.35149 * 123.13503 * 179.73575 * 17 15 14 19 19 S 1.70940 * 108.86229 * 179.97438 * 18 17 15 20 20 C 1.70765 * 91.14504 * 0.28188 * 19 18 17 21 21 Cl 1.73601 * 124.72500 * 179.83528 * 20 19 18 22 22 N 1.28773 * 110.55471 * 359.83131 * 20 19 18 23 23 C 1.55153 * 101.58275 * 322.98545 * 11 10 9 24 24 H 1.08996 * 110.72218 * 277.14680 * 23 11 10 25 25 O 1.42901 * 110.71974 * 154.04555 * 23 11 10 26 26 C 1.47020 * 125.64874 * 25.70743 * 9 7 2 27 27 H 0.96993 * 119.99885 * 185.09107 * 1 2 3 28 28 H 1.09003 * 110.36479 * 322.93047 * 10 9 7 29 29 H 1.08997 * 110.36352 * 85.25188 * 10 9 7 30 30 H 1.08999 * 109.47335 * 53.54299 * 13 11 10 31 31 H 1.09003 * 109.47448 * 173.54391 * 13 11 10 32 32 H 0.97000 * 119.99677 * 0.02562 * 14 13 11 33 33 H 1.07999 * 125.56577 * 0.03442 * 18 17 15 34 34 H 0.96705 * 113.99937 * 180.02562 * 25 23 11 35 35 H 1.08999 * 109.88065 * 298.38813 * 26 9 7 36 36 H 1.08993 * 109.88474 * 59.55622 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 1.6125 -2.0551 -0.5304 9 7 3.1992 -1.3066 0.6708 10 6 4.2847 -2.2525 0.3537 11 6 5.0664 -2.4182 1.6808 12 1 4.5693 -3.1288 2.3411 13 6 6.5132 -2.8398 1.4160 14 7 6.5318 -4.1867 0.8400 15 6 7.7057 -4.7677 0.5226 16 8 8.7498 -4.1740 0.7148 17 6 7.7243 -6.1212 -0.0569 18 6 8.8633 -6.7610 -0.4031 19 16 8.4635 -8.2987 -1.0337 20 6 6.7982 -7.9967 -0.8071 21 17 5.5276 -9.1090 -1.2099 22 7 6.6159 -6.8290 -0.2957 23 6 5.0034 -0.9806 2.2611 24 1 5.7823 -0.3546 1.8258 25 8 5.1141 -1.0051 3.6856 26 6 3.6072 -0.4898 1.8231 27 1 -0.4849 -0.8367 0.0745 28 1 3.8725 -3.2097 0.0342 29 1 4.9330 -1.8405 -0.4196 30 1 6.9737 -2.1400 0.7187 31 1 7.0696 -2.8378 2.3534 32 1 5.6991 -4.6599 0.6864 33 1 9.8628 -6.3657 -0.2975 34 1 5.0799 -0.1309 4.0978 35 1 3.6550 0.5603 1.5348 36 1 2.8974 -0.6202 2.6398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958567417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:00 Heat of formation + Delta-G solvation = -13.554332 kcal Electronic energy + Delta-G solvation = -23226.124748 eV Core-core repulsion = 19478.193138 eV Total energy + Delta-G solvation = -3747.931610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.83854 -39.16524 -38.34759 -37.33503 -35.42433 -34.81213 -32.43238 -31.04242 -30.28082 -27.88387 -26.76042 -25.30865 -23.48802 -22.30827 -20.82964 -20.24886 -20.02548 -19.25571 -17.55657 -17.30015 -16.83458 -16.57616 -15.98733 -15.67668 -15.15568 -15.08339 -14.53746 -14.41566 -13.93656 -13.74084 -13.33306 -12.91221 -12.79270 -12.52893 -12.38878 -12.23511 -12.08381 -11.91156 -11.36680 -11.02489 -10.93712 -10.65233 -10.56637 -10.41693 -10.21546 -10.20999 -9.85199 -9.45219 -9.44110 -9.30660 -9.05506 -8.38437 -7.04216 -6.42728 -3.29907 -0.07778 0.19657 0.95220 1.35183 1.46914 3.05930 3.08958 3.43020 3.50810 3.64002 3.87907 4.41305 4.59711 4.69016 4.69865 4.75771 4.98715 5.09571 5.21463 5.31670 5.44938 5.58667 5.67472 5.80888 6.02023 6.13436 6.30473 6.42043 6.51430 6.67631 6.69988 6.74011 7.42476 7.82721 7.87732 8.01775 8.33578 8.94834 9.53929 10.26543 11.00139 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.002898 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.365043 B = 9658.669646 C =10861.784173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.002 3.998 3 Si 1.034 2.966 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.344 4.344 8 H 0.070 0.930 9 N -0.598 5.598 10 C 0.133 3.867 11 C -0.107 4.107 12 H 0.093 0.907 13 C 0.133 3.867 14 N -0.702 5.702 15 C 0.593 3.407 16 O -0.535 6.535 17 C 0.025 3.975 18 C -0.223 4.223 19 S 0.281 5.719 20 C 0.046 3.954 21 Cl 0.036 6.964 22 N -0.428 5.428 23 C 0.099 3.901 24 H 0.065 0.935 25 O -0.562 6.562 26 C 0.096 3.904 27 H 0.268 0.732 28 H 0.048 0.952 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.413 0.587 33 H 0.200 0.800 34 H 0.377 0.623 35 H 0.033 0.967 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.891 -17.242 -0.128 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.202 4.202 3 Si 0.865 3.135 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.471 4.471 8 H 0.088 0.912 9 N -0.326 5.326 10 C 0.008 3.992 11 C -0.127 4.127 12 H 0.111 0.889 13 C 0.009 3.991 14 N -0.353 5.353 15 C 0.376 3.624 16 O -0.412 6.412 17 C -0.110 4.110 18 C -0.365 4.365 19 S 0.533 5.467 20 C -0.258 4.258 21 Cl 0.064 6.936 22 N -0.146 5.146 23 C 0.039 3.961 24 H 0.083 0.917 25 O -0.367 6.367 26 C -0.030 4.030 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.249 0.751 33 H 0.217 0.783 34 H 0.224 0.776 35 H 0.051 0.949 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.208 -16.560 -0.523 25.366 hybrid contribution -0.592 -0.354 0.332 0.766 sum 18.615 -16.914 -0.191 25.153 Atomic orbital electron populations 1.70854 1.06752 1.29878 1.45995 1.26055 0.95969 1.00778 0.97371 0.84308 0.75667 0.76995 0.76567 1.20645 1.22346 1.21991 1.19819 0.95172 0.98000 1.34071 0.91198 1.44530 1.15538 1.41211 1.31323 1.21729 0.90061 0.95046 0.92393 1.22608 0.94256 0.96679 0.99131 0.88851 1.21435 0.96862 0.82095 0.98702 1.45855 1.08806 1.18089 1.62528 1.16913 0.84302 0.83099 0.78113 1.90829 1.32067 1.63610 1.54729 1.20275 0.86766 0.97741 1.06247 1.26822 1.05482 0.99381 1.04836 1.82987 0.97380 1.11912 1.54412 1.27192 0.95985 0.95506 1.07121 1.98460 1.48606 1.55395 1.91184 1.66706 1.31300 1.04020 1.12616 1.22741 0.96962 0.95868 0.80509 0.91683 1.86479 1.96501 1.34268 1.19457 1.22300 0.93532 0.95502 0.91666 0.92159 0.93371 0.95654 0.90937 0.90694 0.75109 0.78328 0.77608 0.94911 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.70 55.49 0.76 -26.84 16 2 C 0.00 0.07 5.29 -17.43 -0.09 -0.03 16 3 Si 1.03 25.76 26.22 -169.99 -4.46 21.31 16 4 H -0.28 -6.55 6.16 56.52 0.35 -6.20 16 5 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.34 -9.79 10.24 -15.06 -0.15 -9.94 16 8 H 0.07 2.11 8.06 -52.48 -0.42 1.69 16 9 N -0.60 -14.61 3.06 -170.06 -0.52 -15.13 16 10 C 0.13 2.66 6.41 -2.53 -0.02 2.65 16 11 C -0.11 -1.79 2.83 -88.47 -0.25 -2.04 16 12 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 13 C 0.13 1.94 5.12 -4.04 -0.02 1.92 16 14 N -0.70 -9.86 5.40 -61.43 -0.33 -10.19 16 15 C 0.59 8.44 7.80 -12.60 -0.10 8.34 16 16 O -0.53 -8.75 16.71 5.25 0.09 -8.66 16 17 C 0.02 0.30 6.70 -84.51 -0.57 -0.27 16 18 C -0.22 -1.96 10.61 29.63 0.31 -1.65 16 19 S 0.28 1.80 22.96 -107.50 -2.47 -0.67 16 20 C 0.05 0.45 7.98 51.48 0.41 0.86 16 21 Cl 0.04 0.31 29.33 -51.86 -1.52 -1.21 16 22 N -0.43 -5.14 10.13 -9.45 -0.10 -5.24 16 23 C 0.10 1.69 3.78 -24.89 -0.09 1.60 16 24 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 25 O -0.56 -8.62 13.40 -35.23 -0.47 -9.09 16 26 C 0.10 2.06 5.82 -3.06 -0.02 2.04 16 27 H 0.27 8.17 8.73 -40.82 -0.36 7.81 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 30 H 0.07 1.08 8.10 -51.93 -0.42 0.65 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.41 5.64 7.86 -40.82 -0.32 5.32 16 33 H 0.20 1.43 8.03 -52.49 -0.42 1.01 16 34 H 0.38 4.14 9.12 45.56 0.42 4.55 16 35 H 0.03 0.73 3.84 -51.93 -0.20 0.53 16 36 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -34.15 336.15 -7.63 -41.79 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.09 Total: 5.39 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.59 Total: 3.48 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.19 Total: -57.40 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.38 Total: -17.75 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -4.46 Total: 21.31 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.47 Total: -0.67 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.15 -7.63 -41.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958567417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.233 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds