Wall clock time and date at job start Tue Mar 31 2020 16:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86795 * 119.99882 * 2 1 4 4 H 1.48505 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47275 * 299.99959 * 3 2 1 6 6 H 1.48505 * 109.47472 * 60.00220 * 3 2 1 7 7 C 1.38807 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00133 * 34.47831 * 7 2 1 9 9 N 1.36934 * 119.99844 * 214.47890 * 7 2 1 10 10 C 1.47429 * 125.64813 * 206.01097 * 9 7 2 11 11 C 1.54909 * 104.83047 * 204.09541 * 10 9 7 12 12 H 1.08995 * 111.00897 * 81.10656 * 11 10 9 13 13 C 1.53004 * 110.99995 * 204.91609 * 11 10 9 14 14 N 1.46503 * 109.47240 * 293.54241 * 13 11 10 15 15 C 1.34779 * 119.99920 * 179.97438 * 14 13 11 16 16 O 1.21633 * 120.00124 * 0.02562 * 15 14 13 17 17 C 1.47246 * 119.99576 * 180.02562 * 15 14 13 18 18 C 1.35149 * 123.13503 * 179.73575 * 17 15 14 19 19 S 1.70940 * 108.86229 * 179.97438 * 18 17 15 20 20 C 1.70765 * 91.14504 * 0.28188 * 19 18 17 21 21 Cl 1.73601 * 124.72500 * 179.83528 * 20 19 18 22 22 N 1.28773 * 110.55471 * 359.83131 * 20 19 18 23 23 C 1.55153 * 101.58275 * 322.98545 * 11 10 9 24 24 H 1.08996 * 110.72218 * 277.14680 * 23 11 10 25 25 O 1.42901 * 110.71974 * 154.04555 * 23 11 10 26 26 C 1.47020 * 125.64874 * 25.70743 * 9 7 2 27 27 H 0.96993 * 119.99885 * 185.09107 * 1 2 3 28 28 H 1.09003 * 110.36479 * 322.93047 * 10 9 7 29 29 H 1.08997 * 110.36352 * 85.25188 * 10 9 7 30 30 H 1.08999 * 109.47335 * 53.54299 * 13 11 10 31 31 H 1.09003 * 109.47448 * 173.54391 * 13 11 10 32 32 H 0.97000 * 119.99677 * 0.02562 * 14 13 11 33 33 H 1.07999 * 125.56577 * 0.03442 * 18 17 15 34 34 H 0.96705 * 113.99937 * 180.02562 * 25 23 11 35 35 H 1.08999 * 109.88065 * 298.38813 * 26 9 7 36 36 H 1.08993 * 109.88474 * 59.55622 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 1.6125 -2.0551 -0.5304 9 7 3.1992 -1.3066 0.6708 10 6 4.2847 -2.2525 0.3537 11 6 5.0664 -2.4182 1.6808 12 1 4.5693 -3.1288 2.3411 13 6 6.5132 -2.8398 1.4160 14 7 6.5318 -4.1867 0.8400 15 6 7.7057 -4.7677 0.5226 16 8 8.7498 -4.1740 0.7148 17 6 7.7243 -6.1212 -0.0569 18 6 8.8633 -6.7610 -0.4031 19 16 8.4635 -8.2987 -1.0337 20 6 6.7982 -7.9967 -0.8071 21 17 5.5276 -9.1090 -1.2099 22 7 6.6159 -6.8290 -0.2957 23 6 5.0034 -0.9806 2.2611 24 1 5.7823 -0.3546 1.8258 25 8 5.1141 -1.0051 3.6856 26 6 3.6072 -0.4898 1.8231 27 1 -0.4849 -0.8367 0.0745 28 1 3.8725 -3.2097 0.0342 29 1 4.9330 -1.8405 -0.4196 30 1 6.9737 -2.1400 0.7187 31 1 7.0696 -2.8378 2.3534 32 1 5.6991 -4.6599 0.6864 33 1 9.8628 -6.3657 -0.2975 34 1 5.0799 -0.1309 4.0978 35 1 3.6550 0.5603 1.5348 36 1 2.8974 -0.6202 2.6398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958567417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:59 Heat of formation + Delta-G solvation = -42.141871 kcal Electronic energy + Delta-G solvation = -23227.364397 eV Core-core repulsion = 19478.193138 eV Total energy + Delta-G solvation = -3749.171259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72237 -40.37005 -39.59035 -38.00836 -36.77830 -36.23335 -34.35478 -32.13709 -31.55815 -29.48049 -27.96363 -26.58332 -24.88967 -23.45260 -22.48463 -21.59476 -21.02009 -20.21556 -19.59678 -18.47893 -17.86347 -17.48386 -17.03865 -16.88701 -16.57507 -16.37087 -15.83301 -15.55104 -15.19338 -14.96216 -14.76701 -14.61863 -14.42513 -13.91359 -13.68498 -13.15935 -13.04609 -12.96497 -12.78643 -12.59516 -12.51689 -12.25772 -12.01282 -11.67600 -11.49304 -11.20227 -11.12655 -10.94185 -10.87003 -10.55506 -10.32580 -9.97735 -9.11579 -8.69377 -5.52151 -0.76865 -0.42333 0.28198 0.60396 0.68713 1.42110 1.51640 1.69903 2.04426 2.11842 2.52551 2.85956 3.03723 3.12817 3.40553 3.56269 3.68777 3.92184 3.99718 4.02135 4.22736 4.26144 4.41922 4.46668 4.63811 4.77931 4.79173 4.90380 5.03332 5.15549 5.28024 5.68070 5.94091 6.11631 6.37744 6.75701 6.84835 6.95611 7.43503 8.14129 8.71707 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.002898 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.365043 B = 9658.669646 C =10861.784173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.051 4.051 3 Si 1.083 2.917 4 H -0.254 1.254 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.341 4.341 8 H 0.034 0.966 9 N -0.619 5.619 10 C 0.133 3.867 11 C -0.092 4.092 12 H 0.086 0.914 13 C 0.144 3.856 14 N -0.705 5.705 15 C 0.593 3.407 16 O -0.561 6.561 17 C -0.007 4.007 18 C -0.221 4.221 19 S 0.392 5.608 20 C 0.017 3.983 21 Cl 0.035 6.965 22 N -0.459 5.459 23 C 0.115 3.885 24 H 0.092 0.908 25 O -0.565 6.565 26 C 0.087 3.913 27 H 0.254 0.746 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.413 0.587 33 H 0.216 0.784 34 H 0.398 0.602 35 H 0.035 0.965 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.232 -17.626 0.115 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.249 4.249 3 Si 0.908 3.092 4 H -0.179 1.179 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.469 4.469 8 H 0.052 0.948 9 N -0.347 5.347 10 C 0.008 3.992 11 C -0.111 4.111 12 H 0.104 0.896 13 C 0.020 3.980 14 N -0.355 5.355 15 C 0.378 3.622 16 O -0.441 6.441 17 C -0.142 4.142 18 C -0.364 4.364 19 S 0.644 5.356 20 C -0.286 4.286 21 Cl 0.062 6.938 22 N -0.179 5.179 23 C 0.054 3.946 24 H 0.110 0.890 25 O -0.372 6.372 26 C -0.038 4.038 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.249 0.751 33 H 0.232 0.768 34 H 0.249 0.751 35 H 0.052 0.948 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 22.569 -16.975 -0.264 28.242 hybrid contribution -1.602 -0.445 0.233 1.679 sum 20.967 -17.419 -0.031 27.259 Atomic orbital electron populations 1.70969 1.07871 1.29052 1.49251 1.27253 0.95958 1.04358 0.97311 0.83662 0.75837 0.72873 0.76871 1.17853 1.22304 1.20844 1.19667 0.96799 0.96883 1.33583 0.94842 1.44592 1.15578 1.42406 1.32130 1.21811 0.89233 0.93592 0.94542 1.22412 0.95035 0.96829 0.96867 0.89613 1.21267 0.94992 0.82538 0.99163 1.45860 1.09079 1.17929 1.62624 1.17206 0.83682 0.83891 0.77469 1.90799 1.32664 1.64605 1.56030 1.19970 0.87919 0.97367 1.08942 1.27209 1.05491 1.00652 1.03025 1.82648 0.93272 1.08597 1.51035 1.27490 0.98064 0.95387 1.07669 1.98457 1.49177 1.54984 1.91148 1.66612 1.32237 1.05210 1.13792 1.22559 0.94610 0.95749 0.81638 0.89009 1.86451 1.96159 1.36343 1.18288 1.22485 0.95970 0.95266 0.90051 0.93696 0.94120 0.94903 0.90631 0.90011 0.75079 0.76760 0.75140 0.94779 0.95471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.19 13.70 21.65 0.30 -58.90 16 2 C -0.05 -3.01 5.29 84.86 0.45 -2.57 16 3 Si 1.08 51.88 26.22 68.60 1.80 53.68 16 4 H -0.25 -10.94 6.16 99.48 0.61 -10.33 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.34 -20.00 10.24 84.03 0.86 -19.14 16 8 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 9 N -0.62 -30.28 3.06 -691.96 -2.12 -32.40 16 10 C 0.13 5.26 6.41 86.85 0.56 5.81 16 11 C -0.09 -2.93 2.83 -9.40 -0.03 -2.95 16 12 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 13 C 0.14 3.95 5.12 86.38 0.44 4.39 16 14 N -0.71 -19.27 5.40 -466.52 -2.52 -21.79 16 15 C 0.59 16.37 7.80 86.61 0.68 17.05 16 16 O -0.56 -17.69 16.71 -4.14 -0.07 -17.76 16 17 C -0.01 -0.16 6.70 40.52 0.27 0.11 16 18 C -0.22 -3.36 10.61 67.11 0.71 -2.65 16 19 S 0.39 3.81 22.96 -56.49 -1.30 2.51 16 20 C 0.02 0.30 7.98 130.69 1.04 1.35 16 21 Cl 0.03 0.57 29.33 -2.72 -0.08 0.49 16 22 N -0.46 -10.72 10.13 -183.80 -1.86 -12.59 16 23 C 0.11 3.61 3.78 31.79 0.12 3.73 16 24 H 0.09 2.48 8.04 -2.39 -0.02 2.46 16 25 O -0.56 -15.62 13.40 -148.98 -2.00 -17.62 16 26 C 0.09 3.66 5.82 86.74 0.50 4.16 16 27 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.03 1.28 8.00 -2.39 -0.02 1.26 16 30 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.41 11.28 7.86 -92.71 -0.73 10.55 16 33 H 0.22 2.46 8.03 -2.91 -0.02 2.44 16 34 H 0.40 7.36 9.12 -74.05 -0.68 6.69 16 35 H 0.03 1.44 3.84 -2.39 -0.01 1.43 16 36 H 0.03 1.23 8.06 -2.39 -0.02 1.21 16 Total: -1.00 -76.06 336.15 -2.62 -78.67 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -0.38 Total: 16.39 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.61 Total: 9.30 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -6.21 Total: -125.67 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -2.07 Total: -35.38 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 1.80 Total: 53.68 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.30 Total: 2.51 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -0.08 Total: 0.49 kcal Total: -76.06 -2.62 -78.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958567417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.531 kcal (2) G-P(sol) polarization free energy of solvation -76.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds