Wall clock time and date at job start Tue Mar 31 2020 17:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35671 * 125.69428 * 2 1 4 4 Cl 1.73600 * 125.58134 * 359.97438 * 3 2 1 5 5 C 1.35715 * 108.82908 * 180.29761 * 3 2 1 6 6 Cl 1.73609 * 126.05843 * 179.73158 * 5 3 2 7 7 C 1.39785 * 107.87734 * 359.72667 * 5 3 2 8 8 C 1.37799 * 125.69819 * 179.83403 * 2 1 3 9 9 C 1.46542 * 126.22504 * 359.97272 * 8 2 1 10 10 O 1.21714 * 119.99495 * 5.45812 * 9 8 2 11 11 N 1.34776 * 120.00583 * 185.46293 * 9 8 2 12 12 C 1.47021 * 125.64554 * 354.92338 * 11 9 8 13 13 C 1.54317 * 107.27022 * 181.01144 * 12 11 9 14 14 C 1.55156 * 102.94520 * 22.19144 * 13 12 11 15 15 H 1.09000 * 111.00441 * 82.60768 * 14 13 12 16 16 N 1.46490 * 111.00618 * 206.42145 * 14 13 12 17 17 C 1.36944 * 120.00097 * 204.99772 * 16 14 13 18 18 H 1.07995 * 119.99848 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00004 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 119.99839 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47152 * 90.00127 * 21 19 17 23 23 H 1.48503 * 109.47258 * 209.99941 * 21 19 17 24 24 H 1.48498 * 109.47567 * 329.99631 * 21 19 17 25 25 C 1.47415 * 125.65048 * 174.86424 * 11 9 8 26 26 H 1.09000 * 109.47442 * 274.64440 * 1 2 3 27 27 H 1.09002 * 109.47515 * 34.65090 * 1 2 3 28 28 H 1.09004 * 109.46906 * 154.63907 * 1 2 3 29 29 H 1.08008 * 126.43385 * 179.97438 * 7 5 3 30 30 H 1.09000 * 109.88453 * 61.59090 * 12 11 9 31 31 H 1.09003 * 109.87997 * 300.43125 * 12 11 9 32 32 H 1.09005 * 110.72020 * 140.55590 * 13 12 11 33 33 H 1.09000 * 110.72347 * 263.64476 * 13 12 11 34 34 H 0.97001 * 120.00533 * 25.00272 * 16 14 13 35 35 H 0.96997 * 119.99917 * 179.97438 * 20 19 17 36 36 H 1.09004 * 110.36762 * 37.08110 * 25 11 9 37 37 H 1.09002 * 110.37275 * 274.75566 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2565 1.1018 0.0000 4 17 1.6993 2.7460 -0.0006 5 6 3.5553 0.7081 -0.0067 6 17 4.9404 1.7548 -0.0159 7 6 3.5800 -0.6895 -0.0047 8 6 2.2690 -1.1191 0.0032 9 6 1.8143 -2.5121 0.0078 10 8 0.6279 -2.7653 -0.0912 11 7 2.7097 -3.5130 0.1218 12 6 4.1714 -3.3567 0.1428 13 6 4.7816 -4.7692 0.2616 14 6 3.6460 -5.6840 -0.2684 15 1 3.6557 -5.7277 -1.3575 16 7 3.7410 -7.0270 0.3089 17 6 3.2089 -8.0982 -0.3579 18 1 2.7196 -7.9530 -1.3097 19 6 3.2984 -9.3707 0.1894 20 7 3.8952 -9.5478 1.3492 21 14 2.5732 -10.8319 -0.7205 22 1 3.6016 -11.4159 -1.6185 23 1 2.1328 -11.8567 0.2599 24 1 1.4086 -10.3851 -1.5262 25 6 2.3856 -4.9456 0.2472 26 1 -0.3634 0.0832 1.0243 27 1 -0.3634 0.8454 -0.5843 28 1 -0.3633 -0.9287 -0.4402 29 1 4.4602 -1.3155 -0.0090 30 1 4.4673 -2.7517 0.9998 31 1 4.5070 -2.8843 -0.7805 32 1 5.6714 -4.8585 -0.3616 33 1 5.0151 -5.0023 1.3005 34 1 4.1807 -7.1576 1.1636 35 1 3.9574 -10.4369 1.7318 36 1 1.5215 -5.1945 -0.3689 37 1 2.1958 -5.2019 1.2896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968857815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:09 Heat of formation + Delta-G solvation = 30.437065 kcal Electronic energy + Delta-G solvation = -23392.355356 eV Core-core repulsion = 19644.287650 eV Total energy + Delta-G solvation = -3748.067706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.89044 -39.51328 -37.41155 -37.09810 -36.70282 -34.39822 -33.17943 -31.69054 -29.82797 -29.70574 -27.37769 -26.84945 -24.53325 -23.19034 -21.61327 -21.28028 -20.15052 -19.52214 -17.73769 -17.17253 -16.62384 -16.40476 -15.92731 -15.47980 -14.65740 -14.52747 -14.21414 -14.14028 -13.89074 -13.54681 -13.41201 -13.18056 -12.81703 -12.69411 -12.43185 -12.33051 -12.18607 -11.76893 -11.66212 -11.43183 -11.16348 -11.15469 -10.85413 -10.78238 -10.35546 -10.10102 -9.98784 -9.80431 -9.10208 -9.06988 -8.66086 -8.38757 -7.13798 -5.88406 -3.19531 0.98963 1.13155 1.79078 1.94045 2.52744 3.16404 3.18606 3.38757 3.44849 3.46004 4.30000 4.43788 4.50552 4.68518 4.84394 4.91500 5.13348 5.14883 5.20286 5.27004 5.38588 5.47753 5.63511 5.68008 5.86560 5.90830 6.06833 6.18681 6.24524 6.27857 6.37640 6.44457 6.53534 6.79331 7.54950 7.61664 8.09151 8.29085 9.41233 9.93421 10.28130 11.33450 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.002552 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.388004 B =10969.722485 C =11853.337333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.395 5.395 3 C 0.087 3.913 4 Cl -0.001 7.001 5 C -0.097 4.097 6 Cl -0.033 7.033 7 C -0.135 4.135 8 C -0.004 4.004 9 C 0.598 3.402 10 O -0.548 6.548 11 N -0.595 5.595 12 C 0.093 3.907 13 C -0.143 4.143 14 C 0.172 3.828 15 H 0.070 0.930 16 N -0.710 5.710 17 C -0.250 4.250 18 H 0.073 0.927 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.083 3.917 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.176 0.824 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.388 0.612 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 24.582 -2.081 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.071 5.071 3 C -0.057 4.057 4 Cl 0.027 6.973 5 C -0.132 4.132 6 Cl -0.004 7.004 7 C -0.161 4.161 8 C -0.119 4.119 9 C 0.387 3.613 10 O -0.428 6.428 11 N -0.327 5.327 12 C -0.030 4.030 13 C -0.182 4.182 14 C 0.060 3.940 15 H 0.088 0.912 16 N -0.349 5.349 17 C -0.381 4.381 18 H 0.091 0.909 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.041 4.041 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.193 0.807 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.609 24.524 -2.242 24.679 hybrid contribution -0.276 -0.391 -0.051 0.482 sum -1.885 24.133 -2.294 24.315 Atomic orbital electron populations 1.22535 0.74504 1.06737 1.04577 1.43750 1.07476 1.03256 1.52611 1.20594 0.89018 0.82425 1.13631 1.98401 1.89926 1.11759 1.97204 1.19602 0.86365 0.91718 1.15507 1.98343 1.39374 1.65214 1.97484 1.21893 0.96494 0.92356 1.05350 1.20099 0.89181 0.87678 1.14959 1.16329 0.85097 0.82236 0.77686 1.90785 1.15826 1.84148 1.52047 1.48144 1.06651 1.07656 1.70228 1.22476 0.79910 0.99226 1.01382 1.23001 0.99431 0.92742 1.03034 1.21317 0.90113 0.85530 0.97080 0.91208 1.42311 1.67993 1.00196 1.24416 1.19266 1.30356 0.86183 1.02322 0.90873 1.24777 1.00879 0.97677 0.97099 1.69657 1.47813 1.22068 1.18108 0.86167 0.78727 0.82527 0.78617 1.21551 1.21682 1.20592 1.23567 1.02227 0.76191 1.02151 0.89800 0.89520 0.86205 0.80660 0.90848 0.90790 0.89879 0.90243 0.77784 0.93286 0.90642 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 10.54 59.84 0.63 1.16 16 2 N -0.40 -4.60 3.17 -116.65 -0.37 -4.97 16 3 C 0.09 0.96 7.39 -16.76 -0.12 0.83 16 4 Cl 0.00 -0.01 28.60 -51.86 -1.48 -1.50 16 5 C -0.10 -1.08 6.66 -39.91 -0.27 -1.34 16 6 Cl -0.03 -0.32 29.12 -51.86 -1.51 -1.83 16 7 C -0.14 -1.51 9.31 -39.11 -0.36 -1.88 16 8 C 0.00 -0.06 6.86 -81.94 -0.56 -0.62 16 9 C 0.60 9.17 7.80 -12.91 -0.10 9.07 16 10 O -0.55 -9.78 14.80 5.18 0.08 -9.71 16 11 N -0.59 -8.80 3.33 -172.11 -0.57 -9.37 16 12 C 0.09 1.08 4.98 -3.07 -0.02 1.07 16 13 C -0.14 -1.95 6.60 -24.90 -0.16 -2.12 16 14 C 0.17 3.09 3.71 -65.79 -0.24 2.85 16 15 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 16 N -0.71 -16.44 5.24 -51.35 -0.27 -16.71 16 17 C -0.25 -6.59 9.96 -15.06 -0.15 -6.74 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -26.90 13.06 55.49 0.72 -26.17 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.08 1.46 6.63 -2.53 -0.02 1.44 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 0.62 7.90 -51.93 -0.41 0.21 16 28 H 0.12 1.33 5.98 -51.93 -0.31 1.02 16 29 H 0.18 1.63 4.42 -52.48 -0.23 1.40 16 30 H 0.07 0.73 6.87 -51.93 -0.36 0.38 16 31 H 0.07 0.73 6.97 -51.93 -0.36 0.37 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.11 8.01 -51.93 -0.42 0.69 16 34 H 0.39 9.50 7.77 -40.82 -0.32 9.19 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.08 1.44 7.99 -51.93 -0.41 1.03 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -30.13 338.69 -8.85 -38.98 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.05 Total: 6.09 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.47 Total: 3.43 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.49 Total: -57.22 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -2.99 Total: -3.33 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.13 -8.85 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968857815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.416 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds