Wall clock time and date at job start Tue Mar 31 2020 17:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35671 * 125.69428 * 2 1 4 4 Cl 1.73600 * 125.58134 * 359.97438 * 3 2 1 5 5 C 1.35715 * 108.82908 * 180.29761 * 3 2 1 6 6 Cl 1.73609 * 126.05843 * 179.73158 * 5 3 2 7 7 C 1.39785 * 107.87734 * 359.72667 * 5 3 2 8 8 C 1.37799 * 125.69819 * 179.83403 * 2 1 3 9 9 C 1.46542 * 126.22504 * 359.97272 * 8 2 1 10 10 O 1.21714 * 119.99495 * 5.45812 * 9 8 2 11 11 N 1.34776 * 120.00583 * 185.46293 * 9 8 2 12 12 C 1.47021 * 125.64554 * 354.92338 * 11 9 8 13 13 C 1.54317 * 107.27022 * 181.01144 * 12 11 9 14 14 C 1.55156 * 102.94520 * 22.19144 * 13 12 11 15 15 H 1.09000 * 111.00441 * 82.60768 * 14 13 12 16 16 N 1.46490 * 111.00618 * 206.42145 * 14 13 12 17 17 C 1.36944 * 120.00097 * 204.99772 * 16 14 13 18 18 H 1.07995 * 119.99848 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00004 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 119.99839 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47152 * 90.00127 * 21 19 17 23 23 H 1.48503 * 109.47258 * 209.99941 * 21 19 17 24 24 H 1.48498 * 109.47567 * 329.99631 * 21 19 17 25 25 C 1.47415 * 125.65048 * 174.86424 * 11 9 8 26 26 H 1.09000 * 109.47442 * 274.64440 * 1 2 3 27 27 H 1.09002 * 109.47515 * 34.65090 * 1 2 3 28 28 H 1.09004 * 109.46906 * 154.63907 * 1 2 3 29 29 H 1.08008 * 126.43385 * 179.97438 * 7 5 3 30 30 H 1.09000 * 109.88453 * 61.59090 * 12 11 9 31 31 H 1.09003 * 109.87997 * 300.43125 * 12 11 9 32 32 H 1.09005 * 110.72020 * 140.55590 * 13 12 11 33 33 H 1.09000 * 110.72347 * 263.64476 * 13 12 11 34 34 H 0.97001 * 120.00533 * 25.00272 * 16 14 13 35 35 H 0.96997 * 119.99917 * 179.97438 * 20 19 17 36 36 H 1.09004 * 110.36762 * 37.08110 * 25 11 9 37 37 H 1.09002 * 110.37275 * 274.75566 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2565 1.1018 0.0000 4 17 1.6993 2.7460 -0.0006 5 6 3.5553 0.7081 -0.0067 6 17 4.9404 1.7548 -0.0159 7 6 3.5800 -0.6895 -0.0047 8 6 2.2690 -1.1191 0.0032 9 6 1.8143 -2.5121 0.0078 10 8 0.6279 -2.7653 -0.0912 11 7 2.7097 -3.5130 0.1218 12 6 4.1714 -3.3567 0.1428 13 6 4.7816 -4.7692 0.2616 14 6 3.6460 -5.6840 -0.2684 15 1 3.6557 -5.7277 -1.3575 16 7 3.7410 -7.0270 0.3089 17 6 3.2089 -8.0982 -0.3579 18 1 2.7196 -7.9530 -1.3097 19 6 3.2984 -9.3707 0.1894 20 7 3.8952 -9.5478 1.3492 21 14 2.5732 -10.8319 -0.7205 22 1 3.6016 -11.4159 -1.6185 23 1 2.1328 -11.8567 0.2599 24 1 1.4086 -10.3851 -1.5262 25 6 2.3856 -4.9456 0.2472 26 1 -0.3634 0.0832 1.0243 27 1 -0.3634 0.8454 -0.5843 28 1 -0.3633 -0.9287 -0.4402 29 1 4.4602 -1.3155 -0.0090 30 1 4.4673 -2.7517 0.9998 31 1 4.5070 -2.8843 -0.7805 32 1 5.6714 -4.8585 -0.3616 33 1 5.0151 -5.0023 1.3005 34 1 4.1807 -7.1576 1.1636 35 1 3.9574 -10.4369 1.7318 36 1 1.5215 -5.1945 -0.3689 37 1 2.1958 -5.2019 1.2896 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968857815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:09 Heat of formation + Delta-G solvation = 12.300643 kcal Electronic energy + Delta-G solvation = -23393.141810 eV Core-core repulsion = 19644.287650 eV Total energy + Delta-G solvation = -3748.854161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.79966 -40.70160 -38.67686 -37.90349 -37.51008 -36.05345 -34.18373 -33.27035 -31.28499 -30.76514 -28.72624 -27.68749 -26.08385 -24.68588 -22.65417 -22.25549 -21.52191 -20.52694 -19.37009 -18.44042 -17.73310 -17.51197 -17.01176 -16.70198 -16.19100 -15.62297 -15.40738 -15.22894 -15.10645 -14.88211 -14.56757 -14.27092 -14.12928 -13.81785 -13.71688 -13.37564 -13.07000 -12.95715 -12.86447 -12.53442 -12.47206 -12.41723 -12.30049 -12.07757 -11.97323 -11.74556 -11.53946 -11.17685 -10.98166 -9.94851 -9.82053 -9.35256 -9.06261 -7.96318 -5.25890 0.03929 0.29875 0.98228 1.06574 1.48893 1.50112 1.55778 1.58576 2.06906 2.16777 2.56542 3.26385 3.38641 3.62578 3.63582 3.88356 3.97664 4.07866 4.20155 4.27039 4.33155 4.36928 4.44570 4.56710 4.59610 4.73187 4.85670 5.01246 5.03098 5.19175 5.25364 5.37901 5.40817 5.53765 5.56170 6.25708 6.39252 6.91182 7.33349 8.04992 8.28594 9.26303 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.002552 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.388004 B =10969.722485 C =11853.337333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.400 5.400 3 C 0.091 3.909 4 Cl 0.016 6.984 5 C -0.109 4.109 6 Cl -0.021 7.021 7 C -0.118 4.118 8 C -0.029 4.029 9 C 0.596 3.404 10 O -0.583 6.583 11 N -0.596 5.596 12 C 0.094 3.906 13 C -0.131 4.131 14 C 0.165 3.835 15 H 0.068 0.932 16 N -0.722 5.722 17 C -0.246 4.246 18 H 0.076 0.924 19 C -0.068 4.068 20 N -0.965 5.965 21 Si 0.969 3.031 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.273 1.273 25 C 0.096 3.904 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.196 0.804 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.379 0.621 35 H 0.252 0.748 36 H 0.051 0.949 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 26.823 -2.801 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.075 5.075 3 C -0.053 4.053 4 Cl 0.045 6.955 5 C -0.143 4.143 6 Cl 0.007 6.993 7 C -0.144 4.144 8 C -0.143 4.143 9 C 0.386 3.614 10 O -0.466 6.466 11 N -0.327 5.327 12 C -0.027 4.027 13 C -0.169 4.169 14 C 0.054 3.946 15 H 0.086 0.914 16 N -0.360 5.360 17 C -0.378 4.378 18 H 0.094 0.906 19 C -0.261 4.261 20 N -0.614 5.614 21 Si 0.798 3.202 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.198 1.198 25 C -0.030 4.030 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.119 0.881 29 H 0.213 0.787 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.212 0.788 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.698 26.821 -2.994 26.996 hybrid contribution -0.579 -0.898 0.148 1.078 sum -1.276 25.923 -2.846 26.110 Atomic orbital electron populations 1.22615 0.73706 1.06690 1.05483 1.43898 1.08121 1.03146 1.52337 1.20818 0.89154 0.83043 1.12328 1.98412 1.89785 1.10266 1.97048 1.19711 0.86835 0.91943 1.15821 1.98350 1.38666 1.64804 1.97456 1.22112 0.96256 0.92657 1.03390 1.19736 0.90119 0.86685 1.17760 1.16645 0.84596 0.83245 0.76867 1.90767 1.17354 1.84838 1.53647 1.48094 1.08131 1.06252 1.70221 1.22715 0.77585 0.98391 1.04017 1.22920 0.98507 0.92474 1.03022 1.21487 0.92158 0.84085 0.96850 0.91395 1.42428 1.67871 1.01641 1.24101 1.19611 1.28874 0.87160 1.02147 0.90641 1.25503 1.02303 1.00201 0.98119 1.69791 1.49901 1.22071 1.19677 0.85218 0.78190 0.79442 0.77370 1.21158 1.22367 1.19793 1.23076 1.01035 0.78409 1.00432 0.88824 0.87245 0.88130 0.78738 0.88243 0.87975 0.87819 0.90478 0.78840 0.93906 0.93042 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 10.54 127.77 1.35 2.32 16 2 N -0.40 -8.64 3.17 -522.96 -1.66 -10.30 16 3 C 0.09 1.79 7.39 83.51 0.62 2.41 16 4 Cl 0.02 0.26 28.60 -2.72 -0.08 0.18 16 5 C -0.11 -2.11 6.66 22.06 0.15 -1.96 16 6 Cl -0.02 -0.36 29.12 -2.72 -0.08 -0.44 16 7 C -0.12 -2.30 9.31 22.58 0.21 -2.09 16 8 C -0.03 -0.70 6.86 40.31 0.28 -0.42 16 9 C 0.60 17.96 7.80 86.41 0.67 18.63 16 10 O -0.58 -21.27 14.80 -4.39 -0.06 -21.33 16 11 N -0.60 -17.04 3.33 -816.66 -2.72 -19.75 16 12 C 0.09 1.92 4.98 86.73 0.43 2.35 16 13 C -0.13 -3.28 6.60 31.78 0.21 -3.07 16 14 C 0.17 5.86 3.71 46.39 0.17 6.04 16 15 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 16 N -0.72 -33.78 5.24 -316.39 -1.66 -35.44 16 17 C -0.25 -13.06 9.96 84.03 0.84 -12.23 16 18 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.96 -56.93 13.06 21.65 0.28 -56.65 16 21 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.10 3.43 6.63 86.86 0.58 4.00 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.11 1.39 7.90 -2.39 -0.02 1.37 16 28 H 0.10 2.25 5.98 -2.39 -0.01 2.24 16 29 H 0.20 2.82 4.42 -2.91 -0.01 2.80 16 30 H 0.10 1.59 6.87 -2.39 -0.02 1.57 16 31 H 0.10 1.58 6.97 -2.39 -0.02 1.56 16 32 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.08 2.01 8.01 -2.39 -0.02 1.99 16 34 H 0.38 18.90 7.77 -92.71 -0.72 18.18 16 35 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.05 2.05 7.99 -2.38 -0.02 2.03 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -65.97 338.69 2.43 -63.54 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.41 Total: 20.46 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 5.96 Total: 12.65 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -5.75 Total: -122.14 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.16 Total: -0.26 kcal Total: -65.97 2.43 -63.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968857815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.839 kcal (2) G-P(sol) polarization free energy of solvation -65.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds