Wall clock time and date at job start Tue Mar 31 2020 17:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46976 * 2 1 4 4 N 1.46504 * 109.47298 * 240.00351 * 2 1 3 5 5 C 1.34775 * 119.99994 * 84.99693 * 4 2 1 6 6 O 1.21710 * 120.00090 * 0.02562 * 5 4 2 7 7 C 1.46545 * 119.99572 * 180.02562 * 5 4 2 8 8 C 1.37959 * 126.21833 * 180.02562 * 7 5 4 9 9 C 1.39791 * 107.12753 * 179.97438 * 8 7 5 10 10 Cl 1.73600 * 126.06218 * 179.97438 * 9 8 7 11 11 C 1.35721 * 107.87535 * 359.97438 * 9 8 7 12 12 Cl 1.73595 * 125.58376 * 180.02562 * 11 9 8 13 13 N 1.35658 * 108.82979 * 0.26601 * 11 9 8 14 14 H 0.97003 * 125.69598 * 179.73500 * 13 11 9 15 15 C 1.53002 * 109.47349 * 120.00214 * 2 1 3 16 16 C 1.53947 * 113.73901 * 281.82448 * 15 2 1 17 17 N 1.47808 * 86.03696 * 222.08084 * 16 15 2 18 18 C 1.36936 * 134.45865 * 204.64597 * 17 16 15 19 19 H 1.08003 * 119.99852 * 179.86837 * 18 17 16 20 20 C 1.38807 * 120.00115 * 359.86556 * 18 17 16 21 21 N 1.31623 * 119.99827 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00328 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47367 * 59.99832 * 22 20 18 24 24 H 1.48501 * 109.47578 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46995 * 300.00101 * 22 20 18 26 26 C 1.47581 * 91.05134 * 24.55141 * 17 16 15 27 27 H 1.09007 * 109.46820 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47363 * 300.07361 * 1 2 3 29 29 H 1.09003 * 109.46739 * 60.07969 * 1 2 3 30 30 H 0.96993 * 119.99804 * 264.99673 * 4 2 1 31 31 H 1.08002 * 126.43674 * 359.92656 * 8 7 5 32 32 H 1.08998 * 112.94183 * 53.41211 * 15 2 1 33 33 H 1.09000 * 113.76759 * 336.34853 * 16 15 2 34 34 H 1.09001 * 113.76829 * 107.73977 * 16 15 2 35 35 H 0.96995 * 120.00075 * 179.97438 * 21 20 18 36 36 H 1.09002 * 113.77156 * 221.15313 * 26 17 16 37 37 H 1.09001 * 113.87330 * 89.76125 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3572 6 8 1.8580 1.1629 -2.4117 7 6 2.6351 -0.7091 -3.5538 8 6 2.8158 -0.1492 -4.8017 9 6 3.2935 -1.1598 -5.6411 10 17 3.6867 -0.9902 -7.3234 11 6 3.3955 -2.2972 -4.9075 12 17 3.9447 -3.8343 -5.4982 13 7 2.9928 -2.0372 -3.6384 14 1 2.9636 -2.6786 -2.9113 15 6 2.0401 -0.7213 1.2492 16 6 1.9744 0.1329 2.5283 17 7 3.3098 -0.4179 2.8417 18 6 4.0193 -0.6144 3.9962 19 1 5.0066 -1.0505 3.9557 20 6 3.4698 -0.2533 5.2186 21 7 2.2668 0.2786 5.2680 22 14 4.4379 -0.5208 6.7936 23 1 5.7078 0.2465 6.7304 24 1 3.6357 -0.0547 7.9531 25 1 4.7403 -1.9663 6.9492 26 6 3.5702 -0.6729 1.4116 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5150 0.8893 29 1 -0.3633 0.5126 -0.8907 30 1 2.2491 -1.6316 -1.1527 31 1 2.6234 0.8769 -5.0783 32 1 1.6176 -1.7193 1.3658 33 1 1.9751 1.2065 2.3401 34 1 1.1953 -0.1777 3.2245 35 1 1.8826 0.5306 6.1222 36 1 4.0628 -1.6258 1.2178 37 1 4.0408 0.1624 0.8930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970232065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:21 Heat of formation + Delta-G solvation = 27.394155 kcal Electronic energy + Delta-G solvation = -23028.187538 eV Core-core repulsion = 19279.987881 eV Total energy + Delta-G solvation = -3748.199657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.64475 -40.78810 -39.51148 -37.89760 -37.50637 -36.29984 -34.19598 -32.57348 -31.98149 -30.02376 -29.29089 -26.61486 -25.79968 -24.43272 -22.67110 -21.84083 -21.53387 -21.13565 -19.88634 -18.77801 -17.50663 -17.33697 -16.84917 -16.60300 -15.97795 -15.81495 -15.60694 -15.46005 -14.99078 -14.77932 -14.69117 -14.42329 -14.04805 -13.42784 -13.26704 -13.08496 -12.98903 -12.95543 -12.85970 -12.66255 -12.48412 -12.42710 -12.07288 -11.95909 -11.82388 -11.63392 -11.28044 -11.15583 -10.86183 -10.25279 -10.12311 -9.37719 -8.92387 -7.91192 -5.24438 0.04423 0.33426 1.03668 1.07060 1.45160 1.48193 1.54370 1.87743 2.15446 2.22128 2.46955 3.29070 3.38096 3.57610 3.72194 3.80280 3.95311 4.21877 4.26502 4.44395 4.48139 4.57593 4.75755 4.81715 4.86621 4.94173 5.00878 5.08955 5.23524 5.25274 5.32320 5.43156 5.54612 5.64660 5.89440 5.94218 6.43405 6.91765 7.05025 7.60592 8.55798 9.25544 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.021067 B = 0.002366 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.783686 B =11829.476858 C =12559.357384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.068 0.932 4 N -0.702 5.702 5 C 0.593 3.407 6 O -0.559 6.559 7 C -0.018 4.018 8 C -0.094 4.094 9 C -0.112 4.112 10 Cl -0.026 7.026 11 C 0.106 3.894 12 Cl 0.018 6.982 13 N -0.505 5.505 14 H 0.442 0.558 15 C -0.108 4.108 16 C 0.170 3.830 17 N -0.644 5.644 18 C -0.237 4.237 19 H 0.083 0.917 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.977 3.023 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.126 3.874 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.410 0.590 31 H 0.167 0.833 32 H 0.108 0.892 33 H 0.012 0.988 34 H 0.047 0.953 35 H 0.249 0.751 36 H 0.062 0.938 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 -9.006 -24.237 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.086 0.914 4 N -0.353 5.353 5 C 0.380 3.620 6 O -0.437 6.437 7 C -0.132 4.132 8 C -0.121 4.121 9 C -0.147 4.147 10 Cl 0.002 6.998 11 C -0.040 4.040 12 Cl 0.047 6.953 13 N -0.107 5.107 14 H 0.285 0.715 15 C -0.128 4.128 16 C 0.044 3.956 17 N -0.371 5.371 18 C -0.366 4.366 19 H 0.100 0.900 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.805 3.195 23 H -0.207 1.207 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.001 3.999 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.185 0.815 32 H 0.126 0.874 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.641 -8.385 -23.938 25.372 hybrid contribution 0.691 -0.502 1.308 1.562 sum 0.050 -8.886 -22.630 24.312 Atomic orbital electron populations 1.22059 0.93751 1.03139 1.02182 1.20840 0.94896 0.96124 0.82313 0.91426 1.45776 1.66423 1.14320 1.08768 1.16952 0.77316 0.85802 0.81914 1.90877 1.51963 1.16171 1.84732 1.20125 1.13335 0.83628 0.96147 1.21268 1.01068 1.00114 0.89604 1.19675 1.13163 0.93442 0.88385 1.98353 1.92837 1.97695 1.10869 1.20643 1.07460 0.89904 0.85964 1.98447 1.87284 1.23943 1.85633 1.41803 1.49554 1.09818 1.09566 0.71507 1.23468 0.95925 1.00483 0.92950 1.22143 0.88175 0.93802 0.91473 1.46406 1.17339 1.72147 1.01167 1.19380 0.98801 1.34182 0.84214 0.89963 1.25617 0.98144 1.01570 1.00664 1.69980 1.16850 1.48593 1.24723 0.85173 0.77439 0.78111 0.78732 1.20684 1.22053 1.19926 1.22702 0.94827 0.98515 0.83860 0.90658 0.91663 0.92615 0.75406 0.81534 0.87400 0.96969 0.93479 0.94208 0.91953 0.94954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.44 71.98 0.68 -3.02 16 2 C 0.16 4.37 2.29 44.99 0.10 4.47 16 3 H 0.07 2.21 7.48 -2.39 -0.02 2.20 16 4 N -0.70 -14.37 4.94 -446.61 -2.21 -16.58 16 5 C 0.59 14.09 7.75 86.41 0.67 14.76 16 6 O -0.56 -17.93 16.54 -4.38 -0.07 -18.00 16 7 C -0.02 -0.34 7.06 40.31 0.28 -0.06 16 8 C -0.09 -1.83 10.64 22.58 0.24 -1.59 16 9 C -0.11 -1.99 6.66 22.06 0.15 -1.84 16 10 Cl -0.03 -0.44 29.12 -2.72 -0.08 -0.52 16 11 C 0.11 1.60 7.75 83.52 0.65 2.25 16 12 Cl 0.02 0.23 29.13 -2.72 -0.08 0.15 16 13 N -0.51 -6.61 6.00 -174.52 -1.05 -7.66 16 14 H 0.44 3.11 8.19 -92.71 -0.76 2.35 16 15 C -0.11 -3.45 3.35 -10.13 -0.03 -3.48 16 16 C 0.17 7.69 6.98 86.44 0.60 8.29 16 17 N -0.64 -32.05 3.70 -716.14 -2.65 -34.70 16 18 C -0.24 -13.14 10.70 84.03 0.90 -12.24 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 20 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 21 N -0.95 -56.88 11.39 21.65 0.25 -56.63 16 22 Si 0.98 45.23 29.55 68.60 2.03 47.26 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.13 4.62 8.38 86.49 0.72 5.34 16 27 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.41 5.62 7.73 -92.71 -0.72 4.91 16 31 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 32 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.01 0.60 8.03 -2.39 -0.02 0.58 16 34 H 0.05 2.39 7.17 -2.39 -0.02 2.37 16 35 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.03 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -70.20 349.74 1.22 -68.98 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -0.34 Total: 8.11 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.43 Total: 9.59 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -5.66 Total: -115.57 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.07 Total: -18.00 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.16 Total: -0.36 kcal Total: -70.20 1.22 -68.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970232065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.374 kcal (2) G-P(sol) polarization free energy of solvation -70.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds