Wall clock time and date at job start Tue Mar 31 2020 17:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36935 * 119.99907 * 2 1 4 4 H 1.08003 * 119.99921 * 204.21509 * 3 2 1 5 5 C 1.38807 * 120.00136 * 24.20961 * 3 2 1 6 6 N 1.31616 * 120.00161 * 13.43763 * 5 3 2 7 7 Si 1.86800 * 120.00098 * 193.43049 * 5 3 2 8 8 H 1.48505 * 109.47116 * 60.00414 * 7 5 3 9 9 H 1.48504 * 109.47389 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47295 * 300.00193 * 7 5 3 11 11 C 1.46506 * 120.00179 * 180.27526 * 2 1 3 12 12 H 1.08995 * 110.64037 * 183.13810 * 11 2 1 13 13 C 1.55158 * 110.71956 * 59.99753 * 11 2 1 14 14 C 1.54909 * 101.58233 * 206.13582 * 13 11 2 15 15 N 1.47431 * 104.82775 * 37.01023 * 14 13 11 16 16 C 1.34780 * 125.64219 * 155.91943 * 15 14 13 17 17 O 1.21714 * 120.00109 * 4.81003 * 16 15 14 18 18 C 1.46543 * 119.99561 * 184.80795 * 16 15 14 19 19 C 1.37960 * 126.21936 * 174.43544 * 18 16 15 20 20 C 1.39788 * 107.12659 * 180.02562 * 19 18 16 21 21 Cl 1.73604 * 126.06273 * 179.97438 * 20 19 18 22 22 C 1.35726 * 107.87818 * 0.02562 * 20 19 18 23 23 Cl 1.73600 * 125.58569 * 180.02562 * 22 20 19 24 24 N 1.35662 * 108.82720 * 359.73140 * 22 20 19 25 25 H 0.96994 * 125.69645 * 180.30334 * 24 22 20 26 26 C 1.47017 * 108.70616 * 335.87108 * 15 14 13 27 27 H 1.08998 * 109.47261 * 274.92470 * 1 2 3 28 28 H 1.08999 * 109.47586 * 34.92349 * 1 2 3 29 29 H 1.09001 * 109.47527 * 154.92429 * 1 2 3 30 30 H 0.96992 * 120.00499 * 179.97438 * 6 5 3 31 31 H 1.08998 * 111.00571 * 324.21504 * 13 11 2 32 32 H 1.09000 * 110.99953 * 88.02165 * 13 11 2 33 33 H 1.08994 * 110.36633 * 155.84848 * 14 13 11 34 34 H 1.08998 * 110.36367 * 278.06590 * 14 13 11 35 35 H 1.08001 * 126.43909 * 0.04240 * 19 18 16 36 36 H 1.09001 * 109.88318 * 241.64535 * 26 15 14 37 37 H 1.08994 * 109.88417 * 120.48020 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1583 1.2271 -0.3836 5 6 1.5471 2.3351 0.4929 6 7 0.4377 2.2471 1.1956 7 14 2.3110 4.0068 0.1593 8 1 2.3775 4.2371 -1.3063 9 1 1.4816 5.0650 0.7899 10 1 3.6816 4.0475 0.7295 11 6 2.1975 -1.2687 -0.0061 12 1 3.2716 -1.0925 0.0506 13 6 1.8435 -2.1009 -1.2669 14 6 2.1172 -3.5438 -0.7740 15 7 1.6777 -3.5515 0.6332 16 6 1.2950 -4.6396 1.3306 17 8 1.3770 -5.7448 0.8274 18 6 0.7801 -4.4918 2.6946 19 6 0.2550 -5.4963 3.4810 20 6 -0.1116 -4.9165 4.6990 21 17 -0.8257 -5.7412 6.0495 22 6 0.1887 -3.5943 4.6382 23 17 -0.0770 -2.4387 5.9061 24 7 0.7365 -3.3251 3.4266 25 1 1.0445 -2.4561 3.1253 26 6 1.7273 -2.1762 1.1502 27 1 -0.3634 0.0882 1.0238 28 1 -0.3634 0.8426 -0.5883 29 1 -0.3634 -0.9308 -0.4355 30 1 0.0169 3.0500 1.5403 31 1 0.7957 -1.9728 -1.5381 32 1 2.4953 -1.8422 -2.1013 33 1 1.5375 -4.2599 -1.3564 34 1 3.1806 -3.7727 -0.8424 35 1 0.1476 -6.5355 3.2072 36 1 2.4333 -2.1167 1.9786 37 1 0.7358 -1.8692 1.4828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972039941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:36 Heat of formation + Delta-G solvation = 36.063589 kcal Electronic energy + Delta-G solvation = -24014.951504 eV Core-core repulsion = 20267.127782 eV Total energy + Delta-G solvation = -3747.823722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69715 -39.52962 -37.62358 -36.89932 -36.57952 -34.95020 -32.03193 -31.35810 -30.43583 -28.83736 -28.09493 -26.24333 -24.42813 -22.95245 -21.56805 -21.01196 -20.43289 -19.59687 -17.92459 -17.25258 -16.62721 -16.13021 -15.55046 -15.27767 -14.87192 -14.61680 -14.05233 -13.96568 -13.55859 -13.47617 -13.36732 -13.00800 -12.74211 -12.43856 -12.06409 -12.03774 -11.84938 -11.63046 -11.49792 -11.12339 -11.01972 -10.95981 -10.78588 -10.67943 -10.50054 -10.24126 -10.04168 -9.96974 -9.19202 -8.74614 -8.68210 -8.32969 -7.01146 -5.94488 -3.44430 1.10484 1.37197 1.98110 2.07016 2.83398 3.20260 3.26174 3.26757 3.33372 3.33974 4.28449 4.43467 4.71855 4.89299 4.98101 5.13451 5.23434 5.30426 5.38204 5.46582 5.54569 5.67652 5.74197 5.91876 6.03520 6.11214 6.19255 6.32220 6.38068 6.54632 6.64443 6.83010 7.12328 7.46199 7.47066 7.61335 8.05133 8.16740 8.99567 9.61136 10.09635 11.09616 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.003868 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.135770 B = 7236.545794 C = 9094.975452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.584 5.584 3 C -0.269 4.269 4 H 0.071 0.929 5 C 0.011 3.989 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.177 3.823 12 H 0.084 0.916 13 C -0.154 4.154 14 C 0.111 3.889 15 N -0.610 5.610 16 C 0.603 3.397 17 O -0.531 6.531 18 C -0.011 4.011 19 C -0.092 4.092 20 C -0.102 4.102 21 Cl -0.033 7.033 22 C 0.099 3.901 23 Cl 0.006 6.994 24 N -0.519 5.519 25 H 0.434 0.566 26 C 0.060 3.940 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.003 0.997 30 H 0.256 0.744 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.166 0.834 36 H 0.062 0.938 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.218 -11.771 5.011 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.304 5.304 3 C -0.398 4.398 4 H 0.088 0.912 5 C -0.189 4.189 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.066 3.934 12 H 0.103 0.897 13 C -0.194 4.194 14 C -0.011 4.011 15 N -0.344 5.344 16 C 0.392 3.608 17 O -0.408 6.408 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.137 4.137 21 Cl -0.005 7.005 22 C -0.047 4.047 23 Cl 0.034 6.966 24 N -0.125 5.125 25 H 0.281 0.719 26 C -0.065 4.065 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.184 0.816 36 H 0.080 0.920 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.331 -12.020 4.989 13.018 hybrid contribution 0.295 1.622 0.223 1.664 sum -0.036 -10.397 5.212 11.631 Atomic orbital electron populations 1.20829 0.82476 0.95984 0.99569 1.43902 1.01788 0.99822 1.84889 1.19156 0.99471 0.85356 1.35825 0.91171 1.25064 0.97809 0.98787 0.97254 1.70025 1.20295 1.28018 1.36213 0.86307 0.78518 0.83427 0.78093 1.20862 1.21528 1.20760 1.21332 0.96747 0.85579 0.89694 0.89749 1.23414 1.03056 0.92856 1.00091 1.22258 0.99668 0.98634 0.80522 1.48437 1.64824 1.07268 1.13834 1.16458 0.77778 0.83671 0.82919 1.90847 1.56104 1.24359 1.69525 1.20392 1.12312 0.85431 0.94410 1.21058 1.00928 0.99523 0.90318 1.19560 1.11018 0.90160 0.92950 1.98335 1.82065 1.77537 1.42534 1.20697 1.06893 0.90790 0.86311 1.98435 1.94766 1.58092 1.45287 1.42831 1.46859 1.11946 1.10853 0.71863 1.23225 1.01536 0.81207 1.00555 0.94952 0.93694 0.97852 0.93378 0.90452 0.89940 0.90624 0.91300 0.81609 0.91972 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.41 7.51 59.84 0.45 3.86 16 2 N -0.58 -12.70 2.93 -171.39 -0.50 -13.20 16 3 C -0.27 -6.61 9.58 -15.06 -0.14 -6.76 16 4 H 0.07 1.68 7.86 -52.48 -0.41 1.27 16 5 C 0.01 0.27 5.09 -17.43 -0.09 0.18 16 6 N -0.90 -24.08 10.81 55.49 0.60 -23.48 16 7 Si 0.91 20.29 29.57 -169.99 -5.03 15.26 16 8 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 C 0.18 3.05 3.44 -66.09 -0.23 2.83 16 12 H 0.08 1.44 7.95 -51.93 -0.41 1.02 16 13 C -0.15 -2.25 6.61 -24.58 -0.16 -2.41 16 14 C 0.11 1.51 6.89 -2.53 -0.02 1.50 16 15 N -0.61 -9.10 3.33 -172.11 -0.57 -9.68 16 16 C 0.60 9.51 7.81 -12.91 -0.10 9.41 16 17 O -0.53 -9.50 17.18 5.18 0.09 -9.41 16 18 C -0.01 -0.16 6.89 -81.93 -0.56 -0.72 16 19 C -0.09 -1.22 10.64 -39.10 -0.42 -1.63 16 20 C -0.10 -1.32 6.66 -39.90 -0.27 -1.59 16 21 Cl -0.03 -0.38 29.12 -51.86 -1.51 -1.89 16 22 C 0.10 1.31 7.75 -16.76 -0.13 1.18 16 23 Cl 0.01 0.07 29.13 -51.86 -1.51 -1.44 16 24 N -0.52 -7.07 5.61 -6.51 -0.04 -7.11 16 25 H 0.43 5.91 4.98 -40.82 -0.20 5.70 16 26 C 0.06 0.93 4.74 -3.07 -0.01 0.92 16 27 H 0.03 0.77 7.24 -51.93 -0.38 0.39 16 28 H 0.04 1.08 7.42 -51.93 -0.39 0.70 16 29 H 0.00 0.06 6.47 -51.93 -0.34 -0.28 16 30 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.08 1.22 6.46 -51.93 -0.34 0.88 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 36 H 0.06 0.91 7.31 -51.93 -0.38 0.53 16 37 H 0.07 1.25 5.70 -51.93 -0.30 0.95 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -27.19 334.73 -9.07 -36.26 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.96 Total: 2.90 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.68 Total: 6.75 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.51 Total: -53.46 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -3.02 Total: -3.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.19 -9.07 -36.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972039941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.321 kcal (2) G-P(sol) polarization free energy of solvation -27.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds