Wall clock time and date at job start Tue Mar 31 2020 17:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36935 * 119.99907 * 2 1 4 4 H 1.08003 * 119.99921 * 204.21509 * 3 2 1 5 5 C 1.38807 * 120.00136 * 24.20961 * 3 2 1 6 6 N 1.31616 * 120.00161 * 13.43763 * 5 3 2 7 7 Si 1.86800 * 120.00098 * 193.43049 * 5 3 2 8 8 H 1.48505 * 109.47116 * 60.00414 * 7 5 3 9 9 H 1.48504 * 109.47389 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47295 * 300.00193 * 7 5 3 11 11 C 1.46506 * 120.00179 * 180.27526 * 2 1 3 12 12 H 1.08995 * 110.64037 * 183.13810 * 11 2 1 13 13 C 1.55158 * 110.71956 * 59.99753 * 11 2 1 14 14 C 1.54909 * 101.58233 * 206.13582 * 13 11 2 15 15 N 1.47431 * 104.82775 * 37.01023 * 14 13 11 16 16 C 1.34780 * 125.64219 * 155.91943 * 15 14 13 17 17 O 1.21714 * 120.00109 * 4.81003 * 16 15 14 18 18 C 1.46543 * 119.99561 * 184.80795 * 16 15 14 19 19 C 1.37960 * 126.21936 * 174.43544 * 18 16 15 20 20 C 1.39788 * 107.12659 * 180.02562 * 19 18 16 21 21 Cl 1.73604 * 126.06273 * 179.97438 * 20 19 18 22 22 C 1.35726 * 107.87818 * 0.02562 * 20 19 18 23 23 Cl 1.73600 * 125.58569 * 180.02562 * 22 20 19 24 24 N 1.35662 * 108.82720 * 359.73140 * 22 20 19 25 25 H 0.96994 * 125.69645 * 180.30334 * 24 22 20 26 26 C 1.47017 * 108.70616 * 335.87108 * 15 14 13 27 27 H 1.08998 * 109.47261 * 274.92470 * 1 2 3 28 28 H 1.08999 * 109.47586 * 34.92349 * 1 2 3 29 29 H 1.09001 * 109.47527 * 154.92429 * 1 2 3 30 30 H 0.96992 * 120.00499 * 179.97438 * 6 5 3 31 31 H 1.08998 * 111.00571 * 324.21504 * 13 11 2 32 32 H 1.09000 * 110.99953 * 88.02165 * 13 11 2 33 33 H 1.08994 * 110.36633 * 155.84848 * 14 13 11 34 34 H 1.08998 * 110.36367 * 278.06590 * 14 13 11 35 35 H 1.08001 * 126.43909 * 0.04240 * 19 18 16 36 36 H 1.09001 * 109.88318 * 241.64535 * 26 15 14 37 37 H 1.08994 * 109.88417 * 120.48020 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1583 1.2271 -0.3836 5 6 1.5471 2.3351 0.4929 6 7 0.4377 2.2471 1.1956 7 14 2.3110 4.0068 0.1593 8 1 2.3775 4.2371 -1.3063 9 1 1.4816 5.0650 0.7899 10 1 3.6816 4.0475 0.7295 11 6 2.1975 -1.2687 -0.0061 12 1 3.2716 -1.0925 0.0506 13 6 1.8435 -2.1009 -1.2669 14 6 2.1172 -3.5438 -0.7740 15 7 1.6777 -3.5515 0.6332 16 6 1.2950 -4.6396 1.3306 17 8 1.3770 -5.7448 0.8274 18 6 0.7801 -4.4918 2.6946 19 6 0.2550 -5.4963 3.4810 20 6 -0.1116 -4.9165 4.6990 21 17 -0.8257 -5.7412 6.0495 22 6 0.1887 -3.5943 4.6382 23 17 -0.0770 -2.4387 5.9061 24 7 0.7365 -3.3251 3.4266 25 1 1.0445 -2.4561 3.1253 26 6 1.7273 -2.1762 1.1502 27 1 -0.3634 0.0882 1.0238 28 1 -0.3634 0.8426 -0.5883 29 1 -0.3634 -0.9308 -0.4355 30 1 0.0169 3.0500 1.5403 31 1 0.7957 -1.9728 -1.5381 32 1 2.4953 -1.8422 -2.1013 33 1 1.5375 -4.2599 -1.3564 34 1 3.1806 -3.7727 -0.8424 35 1 0.1476 -6.5355 3.2072 36 1 2.4333 -2.1167 1.9786 37 1 0.7358 -1.8692 1.4828 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972039941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:35 Heat of formation + Delta-G solvation = 21.633585 kcal Electronic energy + Delta-G solvation = -24015.577235 eV Core-core repulsion = 20267.127782 eV Total energy + Delta-G solvation = -3748.449454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78667 -40.76000 -38.98126 -37.92867 -37.54811 -36.56410 -33.56192 -32.59055 -31.74193 -30.02845 -29.42727 -28.06820 -25.77044 -24.47560 -22.68403 -22.14637 -21.53313 -21.03038 -19.11723 -18.93323 -17.82705 -17.53700 -16.80540 -16.71156 -16.15024 -15.75962 -15.54715 -15.15091 -14.88783 -14.77902 -14.54861 -14.48726 -14.20118 -13.79240 -13.38955 -13.11833 -13.02854 -12.91667 -12.74654 -12.56645 -12.49335 -12.42925 -12.31670 -12.14996 -11.99637 -11.85730 -11.56327 -11.35191 -10.62911 -10.24429 -9.87905 -9.40415 -8.81909 -7.84921 -5.35531 -0.00802 0.33137 0.97785 1.01599 1.49354 1.51491 1.56797 1.67099 2.03308 2.15139 2.50432 3.19249 3.28846 3.58667 3.65417 3.73643 3.83891 4.13230 4.16633 4.27535 4.38122 4.44099 4.48842 4.75209 4.78859 4.91273 4.92629 5.06688 5.16692 5.24862 5.29303 5.38805 5.64205 5.68669 5.74422 6.22733 6.30852 6.83702 7.12220 7.81484 8.25908 9.16996 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.003868 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.135770 B = 7236.545794 C = 9094.975452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.596 5.596 3 C -0.268 4.268 4 H 0.076 0.924 5 C -0.041 4.041 6 N -0.931 5.931 7 Si 0.962 3.038 8 H -0.280 1.280 9 H -0.299 1.299 10 H -0.275 1.275 11 C 0.169 3.831 12 H 0.090 0.910 13 C -0.141 4.141 14 C 0.114 3.886 15 N -0.609 5.609 16 C 0.605 3.395 17 O -0.554 6.554 18 C -0.027 4.027 19 C -0.085 4.085 20 C -0.105 4.105 21 Cl -0.020 7.020 22 C 0.096 3.904 23 Cl 0.012 6.988 24 N -0.519 5.519 25 H 0.433 0.567 26 C 0.073 3.927 27 H 0.009 0.991 28 H 0.015 0.985 29 H 0.028 0.972 30 H 0.248 0.752 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.179 0.821 36 H 0.073 0.927 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -12.743 4.851 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.318 5.318 3 C -0.398 4.398 4 H 0.094 0.906 5 C -0.237 4.237 6 N -0.577 5.577 7 Si 0.791 3.209 8 H -0.207 1.207 9 H -0.226 1.226 10 H -0.200 1.200 11 C 0.060 3.940 12 H 0.108 0.892 13 C -0.180 4.180 14 C -0.008 4.008 15 N -0.342 5.342 16 C 0.395 3.605 17 O -0.434 6.434 18 C -0.141 4.141 19 C -0.112 4.112 20 C -0.140 4.140 21 Cl 0.009 6.991 22 C -0.050 4.050 23 Cl 0.041 6.959 24 N -0.125 5.125 25 H 0.280 0.720 26 C -0.052 4.052 27 H 0.027 0.973 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.196 0.804 36 H 0.091 0.909 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.558 -13.019 4.813 13.891 hybrid contribution 0.034 1.845 0.292 1.868 sum 0.592 -11.174 5.105 12.299 Atomic orbital electron populations 1.20507 0.82948 0.95843 0.97756 1.43997 1.01727 1.00795 1.85241 1.19496 0.99585 0.86480 1.34278 0.90579 1.25700 0.98528 1.01583 0.97894 1.70171 1.21693 1.27974 1.37861 0.85426 0.77790 0.79975 0.77714 1.20657 1.22578 1.20048 1.21510 0.96584 0.84340 0.91534 0.89227 1.23273 1.02711 0.92843 0.99213 1.22347 1.00892 0.97856 0.79696 1.48433 1.64628 1.06752 1.14349 1.16549 0.77383 0.83345 0.83262 1.90832 1.57266 1.25048 1.70210 1.20293 1.13510 0.85992 0.94258 1.21270 0.99895 0.99937 0.90093 1.19643 1.10858 0.90104 0.93352 1.98342 1.81788 1.77206 1.41752 1.20861 1.06619 0.91190 0.86323 1.98439 1.94694 1.57891 1.44895 1.42774 1.46999 1.11729 1.10965 0.72037 1.22932 1.01077 0.81221 0.99997 0.97266 0.96663 0.95390 0.94246 0.91527 0.88322 0.90064 0.89447 0.80382 0.90929 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.67 7.51 127.77 0.96 8.63 16 2 N -0.60 -25.58 2.93 -696.17 -2.04 -27.62 16 3 C -0.27 -13.04 9.58 84.03 0.81 -12.24 16 4 H 0.08 3.54 7.86 -2.91 -0.02 3.52 16 5 C -0.04 -2.08 5.09 84.86 0.43 -1.65 16 6 N -0.93 -50.62 10.81 21.65 0.23 -50.38 16 7 Si 0.96 41.73 29.57 68.60 2.03 43.76 16 8 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 9 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 C 0.17 5.55 3.44 46.18 0.16 5.71 16 12 H 0.09 2.86 7.95 -2.39 -0.02 2.84 16 13 C -0.14 -3.79 6.61 31.99 0.21 -3.58 16 14 C 0.11 2.80 6.89 86.85 0.60 3.40 16 15 N -0.61 -17.07 3.33 -816.64 -2.72 -19.79 16 16 C 0.60 18.18 7.81 86.41 0.67 18.86 16 17 O -0.55 -19.01 17.18 -4.39 -0.08 -19.08 16 18 C -0.03 -0.73 6.89 40.31 0.28 -0.45 16 19 C -0.09 -2.14 10.64 22.58 0.24 -1.90 16 20 C -0.10 -2.56 6.66 22.06 0.15 -2.41 16 21 Cl -0.02 -0.42 29.12 -2.72 -0.08 -0.50 16 22 C 0.10 2.44 7.75 83.52 0.65 3.08 16 23 Cl 0.01 0.29 29.13 -2.72 -0.08 0.21 16 24 N -0.52 -13.65 5.61 -174.51 -0.98 -14.63 16 25 H 0.43 11.48 4.98 -92.71 -0.46 11.02 16 26 C 0.07 2.16 4.74 86.73 0.41 2.58 16 27 H 0.01 0.44 7.24 -2.39 -0.02 0.42 16 28 H 0.01 0.73 7.42 -2.39 -0.02 0.71 16 29 H 0.03 1.06 6.47 -2.39 -0.02 1.05 16 30 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.07 1.97 6.46 -2.39 -0.02 1.95 16 32 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.18 3.93 8.06 -2.91 -0.02 3.90 16 36 H 0.07 2.01 7.31 -2.39 -0.02 1.99 16 37 H 0.06 2.05 5.70 -2.39 -0.01 2.04 16 Total: -1.00 -56.97 334.73 2.53 -54.45 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.67 Total: 13.55 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 5.56 Total: 20.03 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -5.50 Total: -112.41 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.08 Total: -19.08 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.16 Total: -0.28 kcal Total: -56.97 2.53 -54.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972039941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.082 kcal (2) G-P(sol) polarization free energy of solvation -56.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds