Wall clock time and date at job start Tue Mar 31 2020 17:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.87350 * 2 1 4 4 C 1.54325 * 109.88381 * 238.82827 * 2 1 3 5 5 H 1.08995 * 110.72174 * 336.74935 * 4 2 1 6 6 N 1.46502 * 110.72167 * 100.03007 * 4 2 1 7 7 C 1.36932 * 119.99670 * 205.00206 * 6 4 2 8 8 H 1.07997 * 120.00642 * 359.97438 * 7 6 4 9 9 C 1.38819 * 119.99956 * 179.97438 * 7 6 4 10 10 N 1.31615 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00071 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46803 * 60.00607 * 11 9 7 13 13 H 1.48504 * 109.47274 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47458 * 300.00595 * 11 9 7 15 15 C 1.55160 * 102.94151 * 218.38822 * 4 2 1 16 16 C 1.54913 * 101.58325 * 35.50224 * 15 4 2 17 17 N 1.47019 * 109.88507 * 121.01799 * 2 1 3 18 18 C 1.34775 * 125.64918 * 298.32814 * 17 2 1 19 19 O 1.21713 * 119.99878 * 354.39541 * 18 17 2 20 20 C 1.46543 * 120.00420 * 174.39726 * 18 17 2 21 21 C 1.37956 * 126.22351 * 172.93866 * 20 18 17 22 22 C 1.39794 * 107.12982 * 179.84653 * 21 20 18 23 23 Cl 1.73592 * 126.06638 * 180.15579 * 22 21 20 24 24 C 1.35722 * 107.87053 * 0.41748 * 22 21 20 25 25 Cl 1.73607 * 125.58221 * 179.72227 * 24 22 21 26 26 N 1.35659 * 108.83483 * 359.73683 * 24 22 21 27 27 H 0.96999 * 125.69956 * 179.97438 * 26 24 22 28 28 H 1.09000 * 109.47361 * 300.43544 * 1 2 3 29 29 H 1.09005 * 109.47077 * 60.43706 * 1 2 3 30 30 H 1.09003 * 109.47181 * 180.42828 * 1 2 3 31 31 H 0.96993 * 119.99918 * 24.99384 * 6 4 2 32 32 H 0.97003 * 120.00078 * 179.97438 * 10 9 7 33 33 H 1.08996 * 111.00753 * 277.42423 * 15 4 2 34 34 H 1.09003 * 111.03636 * 153.58895 * 15 4 2 35 35 H 1.08992 * 110.37175 * 204.15059 * 16 15 4 36 36 H 1.09000 * 110.36552 * 81.82295 * 16 15 4 37 37 H 1.07999 * 126.43869 * 359.95987 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2417 5 1 1.3052 -1.4481 -1.6163 6 7 2.4556 0.1930 -2.2878 7 6 2.4583 -0.1993 -3.5997 8 1 2.1655 -1.2049 -3.8633 9 6 2.8375 0.6955 -4.5909 10 7 3.1939 1.9211 -4.2698 11 14 2.8419 0.1600 -6.3805 12 1 1.4720 -0.2546 -6.7765 13 1 3.2834 1.2917 -7.2348 14 1 3.7742 -0.9828 -6.5531 15 6 3.2877 -1.5151 -0.6903 16 6 2.8146 -1.8784 0.7394 17 7 2.0300 -0.7124 1.1848 18 6 1.8085 -0.3580 2.4661 19 8 1.2309 0.6833 2.7183 20 6 2.2630 -1.2261 3.5557 21 6 2.2283 -0.9300 4.9026 22 6 2.7530 -2.0342 5.5807 23 17 2.9337 -2.1860 7.3005 24 6 3.1013 -2.9641 4.6555 25 17 3.8067 -4.5133 4.9963 26 7 2.8083 -2.4846 3.4208 27 1 2.9580 -2.9496 2.5828 28 1 -0.3634 0.5206 0.8860 29 1 -0.3633 0.5071 -0.8939 30 1 -0.3634 -1.0277 0.0077 31 1 2.7188 1.0960 -2.0510 32 1 3.4592 2.5462 -4.9624 33 1 4.1654 -0.8697 -0.6592 34 1 3.4859 -2.4127 -1.2761 35 1 3.6716 -2.0319 1.3950 36 1 2.1886 -2.7705 0.7166 37 1 1.8627 -0.0173 5.3495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986626686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:48 Heat of formation + Delta-G solvation = 22.165565 kcal Electronic energy + Delta-G solvation = -23551.229716 eV Core-core repulsion = 19802.803330 eV Total energy + Delta-G solvation = -3748.426385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90818 -39.77280 -37.59168 -37.16303 -36.75381 -34.34286 -32.17241 -31.38206 -31.07107 -29.85021 -28.69526 -25.46538 -23.97578 -23.31828 -21.65585 -21.26161 -20.66361 -19.93591 -17.96329 -17.39979 -16.76874 -16.26489 -15.56855 -15.24372 -14.85742 -14.74466 -14.22989 -13.89391 -13.74489 -13.63164 -13.51966 -13.07272 -12.95612 -12.34878 -12.25989 -12.20199 -11.99340 -11.84056 -11.76138 -11.33898 -11.19362 -11.15010 -10.92345 -10.74000 -10.40048 -10.23029 -10.06441 -9.82231 -9.37144 -9.05243 -8.77785 -8.50251 -7.15207 -5.90510 -3.22092 0.91869 1.09329 1.79649 1.89702 2.69037 3.02291 3.13544 3.35323 3.40335 3.41663 4.25585 4.46214 4.52053 4.64641 4.93609 4.98899 5.05796 5.23089 5.30732 5.31950 5.53271 5.60253 5.72446 5.86799 5.90640 5.97109 6.08803 6.09775 6.28160 6.38605 6.47492 6.50796 6.61761 6.74323 7.42944 7.56005 8.01558 8.26127 9.37945 9.90522 10.25169 11.31229 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.002600 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.821028 B =10768.574278 C =11507.450724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.083 0.917 4 C 0.178 3.822 5 H 0.070 0.930 6 N -0.712 5.712 7 C -0.250 4.250 8 H 0.072 0.928 9 C -0.007 4.007 10 N -0.928 5.928 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.285 1.285 15 C -0.153 4.153 16 C 0.082 3.918 17 N -0.606 5.606 18 C 0.601 3.399 19 O -0.518 6.518 20 C -0.005 4.005 21 C -0.091 4.091 22 C -0.098 4.098 23 Cl -0.030 7.030 24 C 0.092 3.908 25 Cl 0.002 6.998 26 N -0.524 5.524 27 H 0.429 0.571 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.387 0.613 32 H 0.258 0.742 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -12.316 19.236 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.101 0.899 4 C 0.066 3.934 5 H 0.088 0.912 6 N -0.352 5.352 7 C -0.381 4.381 8 H 0.090 0.910 9 C -0.204 4.204 10 N -0.575 5.575 11 Si 0.740 3.260 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.212 1.212 15 C -0.195 4.195 16 C -0.042 4.042 17 N -0.340 5.340 18 C 0.389 3.611 19 O -0.394 6.394 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.133 4.133 23 Cl -0.002 7.002 24 C -0.053 4.053 25 Cl 0.030 6.970 26 N -0.130 5.130 27 H 0.275 0.725 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.221 0.779 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.447 -11.973 19.215 22.645 hybrid contribution 0.486 -0.588 -1.093 1.333 sum 0.039 -12.561 18.122 22.050 Atomic orbital electron populations 1.22050 0.94518 1.01719 1.03000 1.22063 0.94646 0.97246 0.83740 0.89870 1.21226 0.93362 0.91660 0.87157 0.91208 1.42331 1.79153 1.11833 1.01866 1.19146 1.39125 0.96967 0.82826 0.90997 1.24781 1.01609 0.95816 0.98197 1.69649 1.50600 1.04614 1.32617 0.86250 0.77789 0.77298 0.84680 1.21111 1.21609 1.21169 1.23612 1.01915 1.02169 0.91784 1.22622 0.94212 0.88864 0.98517 1.48490 1.51880 1.28625 1.05014 1.16427 0.79804 0.84699 0.80151 1.90878 1.42533 1.23277 1.82719 1.20530 1.09375 0.86427 0.95572 1.21131 1.01963 0.98920 0.89729 1.19606 1.11705 0.96140 0.85812 1.98347 1.96665 1.97779 1.07380 1.20628 1.07997 0.90786 0.85862 1.98426 1.81663 1.23157 1.93732 1.42669 1.47924 1.14820 1.07558 0.72502 0.92007 0.90695 0.93018 0.77852 0.93185 0.90225 0.90115 0.91642 0.91334 0.81433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.11 37.16 0.34 -2.04 16 2 C 0.13 2.06 3.18 -66.96 -0.21 1.84 16 3 H 0.08 1.55 7.72 -51.93 -0.40 1.15 16 4 C 0.18 3.12 3.14 -66.09 -0.21 2.91 16 5 H 0.07 1.21 7.80 -51.93 -0.41 0.81 16 6 N -0.71 -16.30 5.22 -51.65 -0.27 -16.57 16 7 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 9 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 10 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 11 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 C -0.15 -2.22 6.77 -24.58 -0.17 -2.39 16 16 C 0.08 0.91 5.24 -2.53 -0.01 0.90 16 17 N -0.61 -8.50 3.06 -164.59 -0.50 -9.01 16 18 C 0.60 8.85 7.55 -12.91 -0.10 8.75 16 19 O -0.52 -9.22 16.15 5.18 0.08 -9.13 16 20 C 0.00 -0.06 6.82 -81.94 -0.56 -0.62 16 21 C -0.09 -1.05 10.65 -39.10 -0.42 -1.46 16 22 C -0.10 -1.04 6.66 -39.90 -0.27 -1.31 16 23 Cl -0.03 -0.29 29.12 -51.86 -1.51 -1.80 16 24 C 0.09 0.90 7.75 -16.76 -0.13 0.77 16 25 Cl 0.00 0.01 29.13 -51.86 -1.51 -1.50 16 26 N -0.52 -5.10 5.37 -6.51 -0.03 -5.13 16 27 H 0.43 3.39 5.36 -40.82 -0.22 3.17 16 28 H 0.06 0.98 7.07 -51.93 -0.37 0.62 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.39 9.66 7.57 -40.82 -0.31 9.35 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.62 6.21 -51.93 -0.32 0.29 16 36 H 0.07 0.61 7.84 -51.93 -0.41 0.21 16 37 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -29.26 340.66 -8.98 -38.24 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.09 Total: 9.05 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.98 Total: 0.53 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.08 Total: -56.76 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -3.02 Total: -3.30 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.26 -8.98 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986626686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.408 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds