Wall clock time and date at job start Tue Mar 31 2020 17:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.87350 * 2 1 4 4 C 1.54325 * 109.88381 * 238.82827 * 2 1 3 5 5 H 1.08995 * 110.72174 * 336.74935 * 4 2 1 6 6 N 1.46502 * 110.72167 * 100.03007 * 4 2 1 7 7 C 1.36932 * 119.99670 * 205.00206 * 6 4 2 8 8 H 1.07997 * 120.00642 * 359.97438 * 7 6 4 9 9 C 1.38819 * 119.99956 * 179.97438 * 7 6 4 10 10 N 1.31615 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00071 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46803 * 60.00607 * 11 9 7 13 13 H 1.48504 * 109.47274 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47458 * 300.00595 * 11 9 7 15 15 C 1.55160 * 102.94151 * 218.38822 * 4 2 1 16 16 C 1.54913 * 101.58325 * 35.50224 * 15 4 2 17 17 N 1.47019 * 109.88507 * 121.01799 * 2 1 3 18 18 C 1.34775 * 125.64918 * 298.32814 * 17 2 1 19 19 O 1.21713 * 119.99878 * 354.39541 * 18 17 2 20 20 C 1.46543 * 120.00420 * 174.39726 * 18 17 2 21 21 C 1.37956 * 126.22351 * 172.93866 * 20 18 17 22 22 C 1.39794 * 107.12982 * 179.84653 * 21 20 18 23 23 Cl 1.73592 * 126.06638 * 180.15579 * 22 21 20 24 24 C 1.35722 * 107.87053 * 0.41748 * 22 21 20 25 25 Cl 1.73607 * 125.58221 * 179.72227 * 24 22 21 26 26 N 1.35659 * 108.83483 * 359.73683 * 24 22 21 27 27 H 0.96999 * 125.69956 * 179.97438 * 26 24 22 28 28 H 1.09000 * 109.47361 * 300.43544 * 1 2 3 29 29 H 1.09005 * 109.47077 * 60.43706 * 1 2 3 30 30 H 1.09003 * 109.47181 * 180.42828 * 1 2 3 31 31 H 0.96993 * 119.99918 * 24.99384 * 6 4 2 32 32 H 0.97003 * 120.00078 * 179.97438 * 10 9 7 33 33 H 1.08996 * 111.00753 * 277.42423 * 15 4 2 34 34 H 1.09003 * 111.03636 * 153.58895 * 15 4 2 35 35 H 1.08992 * 110.37175 * 204.15059 * 16 15 4 36 36 H 1.09000 * 110.36552 * 81.82295 * 16 15 4 37 37 H 1.07999 * 126.43869 * 359.95987 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2417 5 1 1.3052 -1.4481 -1.6163 6 7 2.4556 0.1930 -2.2878 7 6 2.4583 -0.1993 -3.5997 8 1 2.1655 -1.2049 -3.8633 9 6 2.8375 0.6955 -4.5909 10 7 3.1939 1.9211 -4.2698 11 14 2.8419 0.1600 -6.3805 12 1 1.4720 -0.2546 -6.7765 13 1 3.2834 1.2917 -7.2348 14 1 3.7742 -0.9828 -6.5531 15 6 3.2877 -1.5151 -0.6903 16 6 2.8146 -1.8784 0.7394 17 7 2.0300 -0.7124 1.1848 18 6 1.8085 -0.3580 2.4661 19 8 1.2309 0.6833 2.7183 20 6 2.2630 -1.2261 3.5557 21 6 2.2283 -0.9300 4.9026 22 6 2.7530 -2.0342 5.5807 23 17 2.9337 -2.1860 7.3005 24 6 3.1013 -2.9641 4.6555 25 17 3.8067 -4.5133 4.9963 26 7 2.8083 -2.4846 3.4208 27 1 2.9580 -2.9496 2.5828 28 1 -0.3634 0.5206 0.8860 29 1 -0.3633 0.5071 -0.8939 30 1 -0.3634 -1.0277 0.0077 31 1 2.7188 1.0960 -2.0510 32 1 3.4592 2.5462 -4.9624 33 1 4.1654 -0.8697 -0.6592 34 1 3.4859 -2.4127 -1.2761 35 1 3.6716 -2.0319 1.3950 36 1 2.1886 -2.7705 0.7166 37 1 1.8627 -0.0173 5.3495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986626686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:47 Heat of formation + Delta-G solvation = 4.335471 kcal Electronic energy + Delta-G solvation = -23552.002887 eV Core-core repulsion = 19802.803330 eV Total energy + Delta-G solvation = -3749.199556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.80596 -40.92976 -38.85140 -37.91941 -37.53329 -36.00989 -33.63640 -32.60010 -32.13011 -31.24591 -29.82106 -26.96406 -25.17277 -24.86108 -22.71920 -22.27310 -21.61218 -21.20877 -19.30744 -18.90907 -17.89101 -17.40437 -16.64972 -16.60722 -16.05550 -15.74507 -15.50479 -15.36196 -14.98447 -14.77054 -14.55541 -14.41123 -14.21033 -13.68844 -13.41650 -13.16406 -13.00965 -12.92474 -12.88636 -12.68244 -12.57776 -12.48674 -12.23484 -12.15528 -11.98245 -11.74697 -11.61482 -11.30131 -10.91082 -10.22729 -9.89362 -9.39427 -9.04244 -7.93940 -5.24157 -0.00361 0.30201 1.00882 1.03090 1.50139 1.52442 1.58249 1.62874 2.04310 2.16419 2.57573 3.25479 3.39546 3.54817 3.69004 3.76244 3.89572 4.07635 4.17234 4.21204 4.30282 4.41495 4.43818 4.51347 4.61648 4.81771 4.97460 5.00959 5.14964 5.16751 5.20668 5.30417 5.39957 5.54667 5.82157 6.25662 6.31634 6.87073 7.32932 8.04421 8.27538 9.29181 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.002600 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.821028 B =10768.574278 C =11507.450724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.133 3.867 3 H 0.050 0.950 4 C 0.172 3.828 5 H 0.079 0.921 6 N -0.728 5.728 7 C -0.238 4.238 8 H 0.085 0.915 9 C -0.074 4.074 10 N -0.970 5.970 11 Si 0.972 3.028 12 H -0.277 1.277 13 H -0.302 1.302 14 H -0.275 1.275 15 C -0.145 4.145 16 C 0.086 3.914 17 N -0.606 5.606 18 C 0.602 3.398 19 O -0.558 6.558 20 C -0.018 4.018 21 C -0.090 4.090 22 C -0.109 4.109 23 Cl -0.023 7.023 24 C 0.104 3.896 25 Cl 0.022 6.978 26 N -0.511 5.511 27 H 0.439 0.561 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.372 0.628 32 H 0.250 0.750 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 -15.535 20.170 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.028 3.972 3 H 0.068 0.932 4 C 0.062 3.938 5 H 0.097 0.903 6 N -0.366 5.366 7 C -0.369 4.369 8 H 0.103 0.897 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.801 3.199 12 H -0.204 1.204 13 H -0.229 1.229 14 H -0.201 1.201 15 C -0.186 4.186 16 C -0.036 4.036 17 N -0.339 5.339 18 C 0.392 3.608 19 O -0.437 6.437 20 C -0.132 4.132 21 C -0.117 4.117 22 C -0.144 4.144 23 Cl 0.006 6.994 24 C -0.041 4.041 25 Cl 0.050 6.950 26 N -0.118 5.118 27 H 0.286 0.714 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.204 0.796 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.278 -15.283 20.170 25.307 hybrid contribution 0.440 0.318 -1.230 1.345 sum 0.161 -14.965 18.939 24.138 Atomic orbital electron populations 1.21949 0.93798 1.02690 1.01924 1.21752 0.95129 0.95757 0.84516 0.93156 1.21435 0.94917 0.91094 0.86321 0.90306 1.42504 1.79578 1.12154 1.02402 1.19585 1.36361 0.97075 0.83914 0.89685 1.25564 1.02916 0.96068 1.02107 1.69819 1.53192 1.05868 1.33193 0.85239 0.78018 0.76563 0.80073 1.20353 1.22884 1.20118 1.23397 0.99335 1.01845 0.93999 1.22797 0.95410 0.88799 0.96598 1.48459 1.51974 1.29155 1.04292 1.16699 0.79126 0.84466 0.80542 1.90856 1.44419 1.25113 1.83321 1.20004 1.11274 0.87273 0.94699 1.21255 1.01381 0.99276 0.89770 1.19654 1.12149 0.96139 0.86446 1.98351 1.96638 1.97732 1.06699 1.20729 1.06605 0.91187 0.85594 1.98444 1.81208 1.21709 1.93618 1.42522 1.47269 1.13957 1.08027 0.71365 0.92846 0.91982 0.90926 0.79645 0.94118 0.92340 0.88376 0.89200 0.87624 0.81389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 9.11 71.98 0.66 -3.79 16 2 C 0.13 4.32 3.18 45.34 0.14 4.47 16 3 H 0.05 1.98 7.72 -2.39 -0.02 1.96 16 4 C 0.17 5.87 3.14 46.18 0.14 6.01 16 5 H 0.08 2.57 7.80 -2.39 -0.02 2.55 16 6 N -0.73 -33.71 5.22 -317.32 -1.66 -35.37 16 7 C -0.24 -12.12 9.96 84.04 0.84 -11.28 16 8 H 0.09 4.03 7.83 -2.91 -0.02 4.01 16 9 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 10 N -0.97 -57.72 13.06 21.65 0.28 -57.44 16 11 Si 0.97 43.93 29.55 68.60 2.03 45.96 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 13 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 15 C -0.14 -3.89 6.77 31.99 0.22 -3.67 16 16 C 0.09 1.65 5.24 86.86 0.46 2.11 16 17 N -0.61 -16.18 3.06 -792.86 -2.43 -18.61 16 18 C 0.60 17.23 7.55 86.41 0.65 17.88 16 19 O -0.56 -20.16 16.15 -4.39 -0.07 -20.23 16 20 C -0.02 -0.41 6.82 40.30 0.27 -0.14 16 21 C -0.09 -1.95 10.65 22.58 0.24 -1.70 16 22 C -0.11 -2.09 6.66 22.06 0.15 -1.94 16 23 Cl -0.02 -0.40 29.12 -2.72 -0.08 -0.48 16 24 C 0.10 1.75 7.75 83.52 0.65 2.40 16 25 Cl 0.02 0.29 29.13 -2.72 -0.08 0.21 16 26 N -0.51 -8.36 5.37 -174.51 -0.94 -9.29 16 27 H 0.44 5.13 5.36 -92.71 -0.50 4.63 16 28 H 0.05 1.72 7.07 -2.39 -0.02 1.70 16 29 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.37 19.31 7.57 -92.71 -0.70 18.61 16 32 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.09 1.34 6.21 -2.39 -0.01 1.33 16 36 H 0.11 1.35 7.84 -2.39 -0.02 1.33 16 37 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -64.81 340.66 1.88 -62.93 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -0.06 Total: 25.55 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.88 Total: 6.76 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -4.74 Total: -120.71 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.07 Total: -20.23 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.16 Total: -0.26 kcal Total: -64.81 1.88 -62.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986626686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.267 kcal (2) G-P(sol) polarization free energy of solvation -64.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds