Wall clock time and date at job start Tue Mar 31 2020 17:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.32285 * 2 1 4 4 C 1.54904 * 110.36792 * 122.23146 * 2 1 3 5 5 C 1.55160 * 101.58219 * 155.84687 * 4 2 1 6 6 H 1.09008 * 110.71474 * 83.04057 * 5 4 2 7 7 N 1.46499 * 110.72231 * 206.13707 * 5 4 2 8 8 C 1.36939 * 119.99933 * 205.27701 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31624 * 119.99740 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47173 * 60.00435 * 12 10 8 14 14 H 1.48497 * 109.47172 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47132 * 300.00314 * 12 10 8 16 16 C 1.54322 * 102.94285 * 324.50166 * 5 4 2 17 17 N 1.47026 * 107.27058 * 22.19125 * 16 5 4 18 18 C 1.34778 * 125.64928 * 181.02541 * 17 16 5 19 19 O 1.21714 * 119.99923 * 180.02562 * 18 17 16 20 20 C 1.46541 * 119.99874 * 0.03904 * 18 17 16 21 21 C 1.37957 * 126.22457 * 179.68865 * 20 18 17 22 22 C 1.39792 * 107.13180 * 179.88184 * 21 20 18 23 23 Cl 1.73596 * 126.06340 * 180.14451 * 22 21 20 24 24 C 1.35722 * 107.87163 * 0.38475 * 22 21 20 25 25 Cl 1.73608 * 125.58192 * 179.76026 * 24 22 21 26 26 N 1.35658 * 108.83109 * 359.76435 * 24 22 21 27 27 H 0.97003 * 125.69370 * 180.02562 * 26 24 22 28 28 H 1.09008 * 109.47298 * 297.76644 * 1 2 3 29 29 H 1.08998 * 109.47694 * 57.76622 * 1 2 3 30 30 H 1.09004 * 109.47437 * 177.76730 * 1 2 3 31 31 H 1.09007 * 111.00597 * 37.77780 * 4 2 1 32 32 H 1.09003 * 111.00873 * 273.92219 * 4 2 1 33 33 H 0.97001 * 119.99790 * 24.99674 * 7 5 4 34 34 H 0.96998 * 119.99409 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.88400 * 141.60596 * 16 5 4 36 36 H 1.08995 * 109.88111 * 262.77868 * 16 5 4 37 37 H 1.08000 * 126.43308 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7745 1.2284 5 6 3.4778 -1.1989 0.7354 6 1 4.1952 -0.3902 0.8754 7 7 3.9250 -2.4113 1.4255 8 6 5.2632 -2.6718 1.5542 9 1 5.9888 -1.9856 1.1431 10 6 5.6871 -3.8176 2.2132 11 7 4.8027 -4.6540 2.7139 12 14 7.5125 -4.1732 2.3881 13 1 8.1627 -3.0676 3.1367 14 1 7.7000 -5.4483 3.1257 15 1 8.1261 -4.2865 1.0405 16 6 3.2494 -1.4776 -0.7652 17 7 2.0431 -0.7396 -1.1675 18 6 1.4971 -0.7388 -2.3998 19 8 0.4929 -0.0874 -2.6200 20 6 2.1126 -1.5225 -3.4743 21 6 1.6612 -1.6188 -4.7744 22 6 2.5437 -2.4626 -5.4551 23 17 2.4372 -2.9182 -7.1269 24 6 3.4953 -2.8668 -4.5759 25 17 4.8176 -3.9321 -4.9374 26 7 3.2440 -2.3020 -3.3684 27 1 3.7728 -2.4258 -2.5646 28 1 -0.3634 0.4788 0.9094 29 1 -0.3634 0.5481 -0.8692 30 1 -0.3634 -1.0269 -0.0400 31 1 1.4511 -1.6465 1.4426 32 1 2.1399 -0.1241 2.1002 33 1 3.2732 -3.0275 1.7949 34 1 5.0989 -5.4548 3.1741 35 1 4.1065 -1.1293 -1.3416 36 1 3.1013 -2.5455 -0.9255 37 1 0.7910 -1.1318 -5.1889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989262834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:34 Heat of formation + Delta-G solvation = 20.298153 kcal Electronic energy + Delta-G solvation = -23857.580236 eV Core-core repulsion = 20109.072874 eV Total energy + Delta-G solvation = -3748.507362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72644 -39.74062 -37.51700 -36.92712 -36.60039 -34.38380 -32.36092 -31.59100 -31.07577 -29.07694 -28.55398 -25.74342 -24.28776 -23.24515 -21.49978 -20.83347 -20.52043 -20.07511 -17.73340 -17.45541 -16.64842 -16.29895 -15.56175 -15.14806 -14.82915 -14.51912 -14.06949 -13.92783 -13.86083 -13.57261 -13.50233 -13.15123 -12.87325 -12.38304 -12.10630 -12.07787 -11.94463 -11.87917 -11.54667 -11.40840 -11.22283 -11.03384 -10.92435 -10.83554 -10.50227 -10.24373 -9.91935 -9.83022 -9.20504 -9.18015 -8.68145 -8.34783 -7.29569 -6.00889 -3.33879 1.09379 1.34405 1.96373 2.05466 2.81759 3.22428 3.23985 3.29096 3.34783 3.35983 4.33684 4.43285 4.69924 4.84456 4.92896 5.07541 5.19956 5.29243 5.36952 5.41459 5.45220 5.64888 5.68972 5.75881 5.91091 5.97669 6.02556 6.18824 6.22629 6.29599 6.35857 6.49240 6.62507 6.82290 7.45766 7.50121 8.08565 8.15811 9.28110 9.79325 10.14125 11.20304 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.004335 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.921880 B = 6457.269359 C = 9001.582647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.138 4.138 5 C 0.176 3.824 6 H 0.073 0.927 7 N -0.711 5.711 8 C -0.261 4.261 9 H 0.073 0.927 10 C -0.002 4.002 11 N -0.925 5.925 12 Si 0.908 3.092 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.284 1.284 16 C 0.055 3.945 17 N -0.607 5.607 18 C 0.604 3.396 19 O -0.527 6.527 20 C -0.010 4.010 21 C -0.093 4.093 22 C -0.102 4.102 23 Cl -0.033 7.033 24 C 0.097 3.903 25 Cl 0.004 6.996 26 N -0.519 5.519 27 H 0.435 0.565 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.388 0.612 34 H 0.259 0.741 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.983 6.132 -12.884 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.095 0.905 4 C -0.177 4.177 5 C 0.063 3.937 6 H 0.091 0.909 7 N -0.350 5.350 8 C -0.391 4.391 9 H 0.091 0.909 10 C -0.200 4.200 11 N -0.572 5.572 12 Si 0.738 3.262 13 H -0.210 1.210 14 H -0.215 1.215 15 H -0.211 1.211 16 C -0.072 4.072 17 N -0.340 5.340 18 C 0.392 3.608 19 O -0.405 6.405 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.137 4.137 23 Cl -0.005 7.005 24 C -0.049 4.049 25 Cl 0.033 6.967 26 N -0.125 5.125 27 H 0.282 0.718 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.223 0.777 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.144 6.292 -12.989 15.322 hybrid contribution 1.444 -0.937 0.374 1.761 sum -3.700 5.355 -12.615 14.196 Atomic orbital electron populations 1.22141 0.93912 1.02848 1.03013 1.21922 0.95088 0.95342 0.84049 0.90467 1.23211 0.97578 1.00534 0.96348 1.21130 0.93698 0.91394 0.87460 0.90876 1.42402 1.05396 1.22197 1.65022 1.19199 0.83175 1.05071 1.31683 0.90908 1.24788 0.97832 0.97225 1.00141 1.69648 1.32545 1.13495 1.41471 0.86271 0.84605 0.77484 0.77808 1.20975 1.21500 1.21056 1.23611 0.85309 0.96148 1.02131 1.48538 1.28456 1.48153 1.08873 1.16463 0.83362 0.80809 0.80128 1.90799 1.24476 1.43685 1.81522 1.20461 0.91963 1.03368 0.96709 1.21060 1.00470 0.99988 0.90389 1.19568 0.99527 1.07123 0.87451 1.98336 1.97940 1.91646 1.12567 1.20695 0.95701 1.01195 0.87273 1.98433 1.43685 1.61474 1.93133 1.42868 1.23128 1.35889 1.10663 0.71810 0.92011 0.89965 0.92614 0.90316 0.89718 0.77709 0.93068 0.92251 0.90848 0.81618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.59 37.16 0.32 -1.74 16 2 C 0.14 1.84 3.77 -66.42 -0.25 1.59 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.14 -1.94 6.13 -24.58 -0.15 -2.09 16 5 C 0.18 2.94 3.62 -66.10 -0.24 2.70 16 6 H 0.07 1.21 8.09 -51.92 -0.42 0.79 16 7 N -0.71 -15.46 5.15 -51.65 -0.27 -15.72 16 8 C -0.26 -6.42 9.96 -15.06 -0.15 -6.57 16 9 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 10 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 11 N -0.93 -25.79 13.06 55.49 0.72 -25.07 16 12 Si 0.91 20.70 29.55 -169.99 -5.02 15.67 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 C 0.05 0.82 4.86 -3.06 -0.01 0.80 16 17 N -0.61 -8.73 3.24 -164.63 -0.53 -9.26 16 18 C 0.60 9.16 7.60 -12.91 -0.10 9.06 16 19 O -0.53 -8.87 14.60 5.18 0.08 -8.79 16 20 C -0.01 -0.15 6.89 -81.94 -0.56 -0.71 16 21 C -0.09 -1.20 10.64 -39.10 -0.42 -1.62 16 22 C -0.10 -1.29 6.66 -39.90 -0.27 -1.56 16 23 Cl -0.03 -0.38 29.12 -51.86 -1.51 -1.89 16 24 C 0.10 1.26 7.75 -16.76 -0.13 1.13 16 25 Cl 0.00 0.05 29.13 -51.86 -1.51 -1.46 16 26 N -0.52 -6.88 5.62 -6.51 -0.04 -6.92 16 27 H 0.43 5.69 4.92 -40.82 -0.20 5.49 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.08 1.16 6.09 -51.93 -0.32 0.84 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.18 7.93 -51.92 -0.41 0.77 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.39 9.17 7.76 -40.82 -0.32 8.85 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.06 0.83 7.23 -51.93 -0.38 0.45 16 36 H 0.07 1.19 6.97 -51.93 -0.36 0.83 16 37 H 0.17 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -27.33 338.50 -9.10 -36.43 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -4.06 Total: 11.08 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.06 Total: 0.83 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.11 Total: -56.97 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -3.02 Total: -3.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.33 -9.10 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989262834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.727 kcal (2) G-P(sol) polarization free energy of solvation -27.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds