Wall clock time and date at job start Tue Mar 31 2020 17:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.32285 * 2 1 4 4 C 1.54904 * 110.36792 * 122.23146 * 2 1 3 5 5 C 1.55160 * 101.58219 * 155.84687 * 4 2 1 6 6 H 1.09008 * 110.71474 * 83.04057 * 5 4 2 7 7 N 1.46499 * 110.72231 * 206.13707 * 5 4 2 8 8 C 1.36939 * 119.99933 * 205.27701 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31624 * 119.99740 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47173 * 60.00435 * 12 10 8 14 14 H 1.48497 * 109.47172 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47132 * 300.00314 * 12 10 8 16 16 C 1.54322 * 102.94285 * 324.50166 * 5 4 2 17 17 N 1.47026 * 107.27058 * 22.19125 * 16 5 4 18 18 C 1.34778 * 125.64928 * 181.02541 * 17 16 5 19 19 O 1.21714 * 119.99923 * 180.02562 * 18 17 16 20 20 C 1.46541 * 119.99874 * 0.03904 * 18 17 16 21 21 C 1.37957 * 126.22457 * 179.68865 * 20 18 17 22 22 C 1.39792 * 107.13180 * 179.88184 * 21 20 18 23 23 Cl 1.73596 * 126.06340 * 180.14451 * 22 21 20 24 24 C 1.35722 * 107.87163 * 0.38475 * 22 21 20 25 25 Cl 1.73608 * 125.58192 * 179.76026 * 24 22 21 26 26 N 1.35658 * 108.83109 * 359.76435 * 24 22 21 27 27 H 0.97003 * 125.69370 * 180.02562 * 26 24 22 28 28 H 1.09008 * 109.47298 * 297.76644 * 1 2 3 29 29 H 1.08998 * 109.47694 * 57.76622 * 1 2 3 30 30 H 1.09004 * 109.47437 * 177.76730 * 1 2 3 31 31 H 1.09007 * 111.00597 * 37.77780 * 4 2 1 32 32 H 1.09003 * 111.00873 * 273.92219 * 4 2 1 33 33 H 0.97001 * 119.99790 * 24.99674 * 7 5 4 34 34 H 0.96998 * 119.99409 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.88400 * 141.60596 * 16 5 4 36 36 H 1.08995 * 109.88111 * 262.77868 * 16 5 4 37 37 H 1.08000 * 126.43308 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7745 1.2284 5 6 3.4778 -1.1989 0.7354 6 1 4.1952 -0.3902 0.8754 7 7 3.9250 -2.4113 1.4255 8 6 5.2632 -2.6718 1.5542 9 1 5.9888 -1.9856 1.1431 10 6 5.6871 -3.8176 2.2132 11 7 4.8027 -4.6540 2.7139 12 14 7.5125 -4.1732 2.3881 13 1 8.1627 -3.0676 3.1367 14 1 7.7000 -5.4483 3.1257 15 1 8.1261 -4.2865 1.0405 16 6 3.2494 -1.4776 -0.7652 17 7 2.0431 -0.7396 -1.1675 18 6 1.4971 -0.7388 -2.3998 19 8 0.4929 -0.0874 -2.6200 20 6 2.1126 -1.5225 -3.4743 21 6 1.6612 -1.6188 -4.7744 22 6 2.5437 -2.4626 -5.4551 23 17 2.4372 -2.9182 -7.1269 24 6 3.4953 -2.8668 -4.5759 25 17 4.8176 -3.9321 -4.9374 26 7 3.2440 -2.3020 -3.3684 27 1 3.7728 -2.4258 -2.5646 28 1 -0.3634 0.4788 0.9094 29 1 -0.3634 0.5481 -0.8692 30 1 -0.3634 -1.0269 -0.0400 31 1 1.4511 -1.6465 1.4426 32 1 2.1399 -0.1241 2.1002 33 1 3.2732 -3.0275 1.7949 34 1 5.0989 -5.4548 3.1741 35 1 4.1065 -1.1293 -1.3416 36 1 3.1013 -2.5455 -0.9255 37 1 0.7910 -1.1318 -5.1889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989262834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:33 Heat of formation + Delta-G solvation = 4.937723 kcal Electronic energy + Delta-G solvation = -23858.246315 eV Core-core repulsion = 20109.072874 eV Total energy + Delta-G solvation = -3749.173441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.78978 -40.91122 -38.78395 -37.93140 -37.55054 -36.02538 -33.54637 -33.19859 -32.13395 -30.29053 -29.94150 -26.90281 -25.94741 -24.53091 -22.57670 -22.10236 -21.64275 -21.20306 -19.29772 -18.79930 -17.85129 -17.48663 -16.74989 -16.59934 -16.02744 -15.74277 -15.46832 -15.29836 -15.01395 -14.90231 -14.58557 -14.41766 -14.18041 -13.62081 -13.33376 -13.15362 -13.02992 -12.94720 -12.90476 -12.80794 -12.53075 -12.42333 -12.22746 -12.14239 -11.96780 -11.76986 -11.59523 -11.10918 -10.89517 -10.23055 -9.84224 -9.39909 -9.11692 -7.97037 -5.27746 0.01143 0.32798 0.98131 1.02491 1.50282 1.50701 1.56838 1.68879 2.08148 2.16560 2.54737 3.23191 3.33194 3.65191 3.73495 3.77219 3.80351 4.09427 4.16755 4.22595 4.42687 4.44116 4.46435 4.56039 4.67980 4.78840 4.96355 5.07823 5.09251 5.17958 5.28572 5.31069 5.48400 5.52865 5.76758 6.22723 6.30735 6.91239 7.31805 8.01880 8.25342 9.25157 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.004335 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.921880 B = 6457.269359 C = 9001.582647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 H 0.095 0.905 4 C -0.127 4.127 5 C 0.169 3.831 6 H 0.081 0.919 7 N -0.722 5.722 8 C -0.247 4.247 9 H 0.084 0.916 10 C -0.064 4.064 11 N -0.964 5.964 12 Si 0.964 3.036 13 H -0.278 1.278 14 H -0.301 1.301 15 H -0.277 1.277 16 C 0.068 3.932 17 N -0.606 5.606 18 C 0.604 3.396 19 O -0.546 6.546 20 C -0.026 4.026 21 C -0.087 4.087 22 C -0.106 4.106 23 Cl -0.021 7.021 24 C 0.094 3.906 25 Cl 0.012 6.988 26 N -0.519 5.519 27 H 0.434 0.566 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.376 0.624 34 H 0.251 0.749 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 7.347 -13.757 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 H 0.113 0.887 4 C -0.166 4.166 5 C 0.059 3.941 6 H 0.098 0.902 7 N -0.361 5.361 8 C -0.379 4.379 9 H 0.102 0.898 10 C -0.257 4.257 11 N -0.614 5.614 12 Si 0.794 3.206 13 H -0.204 1.204 14 H -0.228 1.228 15 H -0.203 1.203 16 C -0.059 4.059 17 N -0.339 5.339 18 C 0.393 3.607 19 O -0.425 6.425 20 C -0.140 4.140 21 C -0.114 4.114 22 C -0.140 4.140 23 Cl 0.008 6.992 24 C -0.051 4.051 25 Cl 0.040 6.960 26 N -0.125 5.125 27 H 0.281 0.719 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.209 0.791 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.813 7.562 -13.895 16.535 hybrid contribution 1.297 -1.253 0.554 1.887 sum -3.516 6.309 -13.340 15.170 Atomic orbital electron populations 1.22060 0.93380 1.02046 1.03643 1.22051 0.95495 0.95823 0.82993 0.88731 1.23121 0.95558 1.00504 0.97368 1.21334 0.95257 0.89614 0.87935 0.90151 1.42519 1.04271 1.23556 1.65728 1.19606 0.84661 1.04302 1.29310 0.89850 1.25466 1.01072 0.97828 1.01318 1.69793 1.33992 1.14044 1.43548 0.85357 0.80835 0.76680 0.77736 1.20376 1.22790 1.20335 1.23269 0.86110 0.95591 1.00913 1.48540 1.28184 1.48037 1.09127 1.16567 0.83116 0.80638 0.80363 1.90791 1.25249 1.44600 1.81857 1.20381 0.92611 1.04164 0.96849 1.21263 1.00581 0.99507 0.90034 1.19654 0.99296 1.06947 0.88131 1.98341 1.97891 1.91514 1.11444 1.20853 0.95960 1.01113 0.87214 1.98437 1.43287 1.61175 1.93053 1.42807 1.23008 1.35919 1.10763 0.71906 0.89715 0.91116 0.93929 0.91414 0.88033 0.79109 0.94017 0.90934 0.92156 0.80482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.59 71.98 0.62 -3.05 16 2 C 0.14 3.39 3.77 45.47 0.17 3.56 16 3 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.13 -3.36 6.13 31.99 0.20 -3.16 16 5 C 0.17 5.40 3.62 46.18 0.17 5.56 16 6 H 0.08 2.48 8.09 -2.38 -0.02 2.46 16 7 N -0.72 -31.02 5.15 -317.32 -1.63 -32.66 16 8 C -0.25 -11.98 9.96 84.03 0.84 -11.14 16 9 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 10 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 11 N -0.96 -54.62 13.06 21.65 0.28 -54.34 16 12 Si 0.96 42.45 29.55 68.60 2.03 44.48 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 15 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 16 C 0.07 1.94 4.86 86.73 0.42 2.36 16 17 N -0.61 -16.58 3.24 -792.97 -2.57 -19.15 16 18 C 0.60 17.63 7.60 86.41 0.66 18.28 16 19 O -0.55 -17.78 14.60 -4.39 -0.06 -17.85 16 20 C -0.03 -0.70 6.89 40.30 0.28 -0.42 16 21 C -0.09 -2.14 10.64 22.58 0.24 -1.90 16 22 C -0.11 -2.52 6.66 22.06 0.15 -2.38 16 23 Cl -0.02 -0.43 29.12 -2.72 -0.08 -0.51 16 24 C 0.09 2.33 7.75 83.52 0.65 2.97 16 25 Cl 0.01 0.27 29.13 -2.72 -0.08 0.19 16 26 N -0.52 -13.20 5.62 -174.51 -0.98 -14.18 16 27 H 0.43 10.95 4.92 -92.71 -0.46 10.50 16 28 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.07 1.89 6.09 -2.39 -0.01 1.88 16 30 H 0.04 1.11 8.14 -2.38 -0.02 1.10 16 31 H 0.07 1.97 7.93 -2.38 -0.02 1.96 16 32 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.38 17.91 7.76 -92.71 -0.72 17.20 16 34 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.07 1.90 7.23 -2.39 -0.02 1.88 16 36 H 0.06 1.92 6.97 -2.39 -0.02 1.91 16 37 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -57.33 338.50 1.71 -55.61 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.04 Total: 30.55 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 4.85 Total: 7.84 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -4.90 Total: -120.32 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.06 Total: -17.85 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.16 Total: -0.32 kcal Total: -57.33 1.71 -55.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989262834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.552 kcal (2) G-P(sol) polarization free energy of solvation -57.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds