Wall clock time and date at job start Tue Mar 31 2020 17:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34779 * 119.99467 * 2 1 4 4 O 1.21710 * 119.99575 * 180.90080 * 3 2 1 5 5 C 1.46542 * 120.00223 * 0.89702 * 3 2 1 6 6 C 1.37960 * 126.22495 * 168.94968 * 5 3 2 7 7 C 1.39783 * 107.13200 * 180.13444 * 6 5 3 8 8 Cl 1.73600 * 126.06613 * 179.89517 * 7 6 5 9 9 C 1.35722 * 107.87234 * 359.62852 * 7 6 5 10 10 Cl 1.73603 * 125.58387 * 180.24913 * 9 7 6 11 11 N 1.35657 * 108.83158 * 0.23048 * 9 7 6 12 12 H 0.97009 * 125.69254 * 179.97438 * 11 9 7 13 13 C 1.46493 * 120.00244 * 180.02562 * 2 1 3 14 14 C 1.53780 * 113.61608 * 39.12835 * 13 2 1 15 15 C 1.53954 * 87.01978 * 220.05096 * 14 13 2 16 16 N 1.46504 * 113.53934 * 270.81279 * 15 14 13 17 17 C 1.36940 * 120.00202 * 252.49748 * 16 15 14 18 18 H 1.08006 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00454 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47131 * 90.00252 * 21 19 17 23 23 H 1.48504 * 109.47289 * 210.00040 * 21 19 17 24 24 H 1.48499 * 109.47584 * 330.00496 * 21 19 17 25 25 C 1.53781 * 87.11297 * 25.36451 * 15 14 13 26 26 H 1.08992 * 109.47138 * 83.45807 * 1 2 3 27 27 H 1.09004 * 109.46551 * 203.45827 * 1 2 3 28 28 H 1.08997 * 109.46938 * 323.45307 * 1 2 3 29 29 H 1.08006 * 126.43137 * 359.97438 * 6 5 3 30 30 H 1.08998 * 112.85118 * 170.33178 * 13 2 1 31 31 H 1.08995 * 113.61857 * 334.57367 * 14 13 2 32 32 H 1.09004 * 113.60811 * 105.47494 * 14 13 2 33 33 H 1.09000 * 113.73884 * 139.94661 * 15 14 13 34 34 H 0.97002 * 119.99914 * 72.49521 * 16 15 14 35 35 H 0.97000 * 120.00229 * 179.97438 * 20 19 17 36 36 H 1.08993 * 113.61340 * 220.08753 * 25 15 14 37 37 H 1.09000 * 113.61048 * 89.18677 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3558 1.1674 -0.0166 5 6 1.4062 2.4363 0.0199 6 6 1.9474 3.6868 0.2357 7 6 0.8967 4.6066 0.1725 8 17 1.0293 6.3253 0.3781 9 6 -0.2446 3.9183 -0.0839 10 17 -1.8253 4.6137 -0.2618 11 7 0.0522 2.5981 -0.1789 12 1 -0.5828 1.8865 -0.3566 13 6 2.1976 -1.2686 -0.0006 14 6 1.5591 -2.3483 -0.8902 15 6 1.9076 -3.3557 0.2206 16 7 3.2381 -3.9513 0.0739 17 6 3.3642 -5.2573 -0.3179 18 1 2.4828 -5.8482 -0.5193 19 6 4.6248 -5.8214 -0.4573 20 7 5.6989 -5.1012 -0.2124 21 14 4.7968 -7.6032 -0.9912 22 1 4.8753 -7.6708 -2.4726 23 1 6.0330 -8.1790 -0.4033 24 1 3.6189 -8.3765 -0.5223 25 6 1.8676 -2.1710 1.2002 26 1 -0.3633 0.1171 -1.0209 27 1 -0.3632 -0.9428 0.4091 28 1 -0.3633 0.8256 0.6119 29 1 2.9872 3.9124 0.4213 30 1 3.2667 -1.1400 -0.1692 31 1 0.4875 -2.2147 -1.0381 32 1 2.0977 -2.5208 -1.8221 33 1 1.1293 -4.0974 0.4003 34 1 4.0296 -3.4204 0.2544 35 1 6.5798 -5.4955 -0.3095 36 1 2.6547 -2.2006 1.9535 37 1 0.8804 -1.9889 1.6250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999196787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:58 Heat of formation + Delta-G solvation = 59.145463 kcal Electronic energy + Delta-G solvation = -23171.485227 eV Core-core repulsion = 19424.662410 eV Total energy + Delta-G solvation = -3746.822817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05741 -39.89221 -38.04116 -37.23306 -36.79581 -35.20918 -33.14318 -31.59244 -30.09415 -29.28235 -27.58102 -25.26432 -24.89672 -23.48319 -21.94304 -21.35671 -20.73842 -18.49182 -18.25554 -17.51750 -16.82425 -16.20971 -16.08778 -15.15698 -14.98554 -14.92724 -14.38473 -14.04397 -13.94849 -13.67282 -13.44137 -13.16597 -12.84682 -12.49231 -12.30873 -12.24894 -12.12187 -11.99925 -11.83112 -11.63223 -11.22494 -10.91715 -10.83891 -10.38497 -10.22642 -10.19483 -9.76063 -9.72680 -9.40970 -8.96998 -8.77496 -8.54587 -7.07394 -5.83866 -3.14890 0.86469 1.03433 1.76218 1.85536 2.63104 2.95088 3.08963 3.39605 3.44510 3.46749 4.15103 4.46653 4.49913 4.51830 4.79474 4.92737 5.02536 5.14582 5.17827 5.27634 5.32781 5.39064 5.76104 5.79116 5.89035 5.94452 6.00231 6.06670 6.28001 6.40823 6.52378 6.59794 6.63830 6.89557 7.24108 7.63988 7.96025 8.33808 9.44771 10.00068 10.33941 11.37999 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.031618 B = 0.002251 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.349334 B =12436.464011 C =13104.271361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.597 5.597 3 C 0.584 3.416 4 O -0.512 6.512 5 C -0.008 4.008 6 C -0.090 4.090 7 C -0.097 4.097 8 Cl -0.030 7.030 9 C 0.088 3.912 10 Cl 0.001 6.999 11 N -0.528 5.528 12 H 0.431 0.569 13 C 0.125 3.875 14 C -0.183 4.183 15 C 0.174 3.826 16 N -0.705 5.705 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.928 5.928 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.169 4.169 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.168 0.832 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.387 0.613 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.260 20.352 1.159 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.329 5.329 3 C 0.372 3.628 4 O -0.387 6.387 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.132 4.132 8 Cl -0.001 7.001 9 C -0.056 4.056 10 Cl 0.030 6.970 11 N -0.138 5.138 12 H 0.280 0.720 13 C 0.023 3.977 14 C -0.225 4.225 15 C 0.060 3.940 16 N -0.343 5.343 17 C -0.379 4.379 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.575 5.575 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.209 4.209 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.186 0.814 30 H 0.142 0.858 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.799 20.150 1.073 26.256 hybrid contribution -0.306 -0.728 -0.402 0.886 sum -17.105 19.422 0.671 25.889 Atomic orbital electron populations 1.22146 0.81276 1.04289 1.01306 1.47885 1.06113 1.06464 1.72465 1.16932 0.86842 0.81632 0.77437 1.90915 1.12053 1.86142 1.49565 1.20572 0.81453 0.96043 1.14108 1.21170 0.99561 0.88221 1.02674 1.19645 0.92456 0.86809 1.14282 1.98351 1.98073 1.07535 1.96181 1.20674 0.88474 0.84673 1.11760 1.98424 1.20903 1.81440 1.96283 1.43206 1.09025 1.06512 1.55021 0.71957 1.22914 0.97971 0.78736 0.98066 1.24383 0.99385 0.97713 1.01036 1.20922 0.90051 0.91253 0.91742 1.42220 1.00935 1.11149 1.80017 1.19248 0.92368 0.87688 1.38645 0.90925 1.24796 0.95421 0.98388 1.02036 1.69667 0.97252 1.35921 1.54705 0.86168 0.77125 0.84474 0.78232 1.21617 1.21687 1.20683 1.23989 1.01492 0.97587 0.97812 0.92014 0.88544 0.91447 0.81404 0.85849 0.91079 0.90667 0.91260 0.77872 0.93270 0.90755 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.42 7.60 59.85 0.46 0.87 16 2 N -0.60 -7.51 3.08 -174.59 -0.54 -8.05 16 3 C 0.58 8.30 7.64 -12.91 -0.10 8.20 16 4 O -0.51 -9.34 16.37 5.18 0.08 -9.26 16 5 C -0.01 -0.09 6.64 -81.94 -0.54 -0.63 16 6 C -0.09 -1.00 10.66 -39.11 -0.42 -1.42 16 7 C -0.10 -0.99 6.66 -39.90 -0.27 -1.25 16 8 Cl -0.03 -0.28 29.12 -51.86 -1.51 -1.79 16 9 C 0.09 0.80 7.75 -16.76 -0.13 0.67 16 10 Cl 0.00 0.01 29.13 -51.86 -1.51 -1.50 16 11 N -0.53 -4.49 5.05 -6.51 -0.03 -4.52 16 12 H 0.43 2.61 4.97 -40.82 -0.20 2.41 16 13 C 0.12 1.94 4.09 -67.12 -0.27 1.67 16 14 C -0.18 -2.86 7.30 -25.83 -0.19 -3.05 16 15 C 0.17 3.19 4.57 -67.02 -0.31 2.88 16 16 N -0.70 -17.04 5.31 -52.55 -0.28 -17.31 16 17 C -0.25 -6.69 9.97 -15.06 -0.15 -6.84 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 21 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.17 -2.59 7.34 -25.92 -0.19 -2.78 16 26 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 27 H 0.10 0.68 6.09 -51.93 -0.32 0.37 16 28 H 0.07 0.42 5.20 -51.93 -0.27 0.15 16 29 H 0.17 1.80 8.06 -52.48 -0.42 1.37 16 30 H 0.12 2.35 7.21 -51.93 -0.37 1.98 16 31 H 0.07 0.88 6.66 -51.93 -0.35 0.54 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.39 10.10 7.90 -40.82 -0.32 9.78 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 0.96 6.91 -51.93 -0.36 0.60 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -31.52 338.94 -9.01 -40.53 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.83 Total: 8.94 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.21 Total: -2.05 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.13 Total: -56.88 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -3.02 Total: -3.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.52 -9.01 -40.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999196787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.673 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds