Wall clock time and date at job start Tue Mar 31 2020 17:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34779 * 119.99467 * 2 1 4 4 O 1.21710 * 119.99575 * 180.90080 * 3 2 1 5 5 C 1.46542 * 120.00223 * 0.89702 * 3 2 1 6 6 C 1.37960 * 126.22495 * 168.94968 * 5 3 2 7 7 C 1.39783 * 107.13200 * 180.13444 * 6 5 3 8 8 Cl 1.73600 * 126.06613 * 179.89517 * 7 6 5 9 9 C 1.35722 * 107.87234 * 359.62852 * 7 6 5 10 10 Cl 1.73603 * 125.58387 * 180.24913 * 9 7 6 11 11 N 1.35657 * 108.83158 * 0.23048 * 9 7 6 12 12 H 0.97009 * 125.69254 * 179.97438 * 11 9 7 13 13 C 1.46493 * 120.00244 * 180.02562 * 2 1 3 14 14 C 1.53780 * 113.61608 * 39.12835 * 13 2 1 15 15 C 1.53954 * 87.01978 * 220.05096 * 14 13 2 16 16 N 1.46504 * 113.53934 * 270.81279 * 15 14 13 17 17 C 1.36940 * 120.00202 * 252.49748 * 16 15 14 18 18 H 1.08006 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00454 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47131 * 90.00252 * 21 19 17 23 23 H 1.48504 * 109.47289 * 210.00040 * 21 19 17 24 24 H 1.48499 * 109.47584 * 330.00496 * 21 19 17 25 25 C 1.53781 * 87.11297 * 25.36451 * 15 14 13 26 26 H 1.08992 * 109.47138 * 83.45807 * 1 2 3 27 27 H 1.09004 * 109.46551 * 203.45827 * 1 2 3 28 28 H 1.08997 * 109.46938 * 323.45307 * 1 2 3 29 29 H 1.08006 * 126.43137 * 359.97438 * 6 5 3 30 30 H 1.08998 * 112.85118 * 170.33178 * 13 2 1 31 31 H 1.08995 * 113.61857 * 334.57367 * 14 13 2 32 32 H 1.09004 * 113.60811 * 105.47494 * 14 13 2 33 33 H 1.09000 * 113.73884 * 139.94661 * 15 14 13 34 34 H 0.97002 * 119.99914 * 72.49521 * 16 15 14 35 35 H 0.97000 * 120.00229 * 179.97438 * 20 19 17 36 36 H 1.08993 * 113.61340 * 220.08753 * 25 15 14 37 37 H 1.09000 * 113.61048 * 89.18677 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3558 1.1674 -0.0166 5 6 1.4062 2.4363 0.0199 6 6 1.9474 3.6868 0.2357 7 6 0.8967 4.6066 0.1725 8 17 1.0293 6.3253 0.3781 9 6 -0.2446 3.9183 -0.0839 10 17 -1.8253 4.6137 -0.2618 11 7 0.0522 2.5981 -0.1789 12 1 -0.5828 1.8865 -0.3566 13 6 2.1976 -1.2686 -0.0006 14 6 1.5591 -2.3483 -0.8902 15 6 1.9076 -3.3557 0.2206 16 7 3.2381 -3.9513 0.0739 17 6 3.3642 -5.2573 -0.3179 18 1 2.4828 -5.8482 -0.5193 19 6 4.6248 -5.8214 -0.4573 20 7 5.6989 -5.1012 -0.2124 21 14 4.7968 -7.6032 -0.9912 22 1 4.8753 -7.6708 -2.4726 23 1 6.0330 -8.1790 -0.4033 24 1 3.6189 -8.3765 -0.5223 25 6 1.8676 -2.1710 1.2002 26 1 -0.3633 0.1171 -1.0209 27 1 -0.3632 -0.9428 0.4091 28 1 -0.3633 0.8256 0.6119 29 1 2.9872 3.9124 0.4213 30 1 3.2667 -1.1400 -0.1692 31 1 0.4875 -2.2147 -1.0381 32 1 2.0977 -2.5208 -1.8221 33 1 1.1293 -4.0974 0.4003 34 1 4.0296 -3.4204 0.2544 35 1 6.5798 -5.4955 -0.3095 36 1 2.6547 -2.2006 1.9535 37 1 0.8804 -1.9889 1.6250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999196787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:58 Heat of formation + Delta-G solvation = 38.695164 kcal Electronic energy + Delta-G solvation = -23172.372018 eV Core-core repulsion = 19424.662410 eV Total energy + Delta-G solvation = -3747.709608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.89508 -41.03591 -39.32194 -37.92287 -37.54941 -36.45056 -34.91659 -32.49032 -31.80424 -30.31113 -28.38485 -26.63797 -26.35334 -25.10288 -23.02177 -22.25784 -21.58753 -19.83964 -19.48820 -19.05192 -17.95655 -17.32061 -17.00449 -16.68198 -15.93314 -15.83967 -15.76792 -15.45215 -15.07449 -14.75244 -14.49607 -14.38604 -14.26892 -13.50337 -13.39239 -13.25212 -13.21313 -12.99042 -12.85847 -12.76345 -12.54058 -12.47391 -12.16538 -11.99265 -11.84726 -11.70621 -11.38103 -11.09492 -10.89439 -10.22498 -9.79415 -9.38612 -9.04115 -7.95269 -5.25534 -0.00485 0.29560 1.00632 1.03661 1.48043 1.49854 1.58293 1.67855 2.00362 2.22733 2.55552 3.29278 3.36709 3.63280 3.71646 3.78924 3.83533 3.90015 4.15132 4.24942 4.32314 4.37499 4.44359 4.57341 4.74897 4.80081 4.95245 5.00073 5.06779 5.20073 5.22672 5.28286 5.50766 5.63221 5.83764 6.20222 6.27348 6.89818 7.31408 8.07525 8.28353 9.28210 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.031618 B = 0.002251 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.349334 B =12436.464011 C =13104.271361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.592 5.592 3 C 0.581 3.419 4 O -0.568 6.568 5 C -0.018 4.018 6 C -0.096 4.096 7 C -0.111 4.111 8 Cl -0.025 7.025 9 C 0.103 3.897 10 Cl 0.023 6.977 11 N -0.510 5.510 12 H 0.444 0.556 13 C 0.128 3.872 14 C -0.161 4.161 15 C 0.153 3.847 16 N -0.724 5.724 17 C -0.241 4.241 18 H 0.085 0.915 19 C -0.080 4.080 20 N -0.973 5.973 21 Si 0.975 3.025 22 H -0.289 1.289 23 H -0.299 1.299 24 H -0.264 1.264 25 C -0.149 4.149 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.163 0.837 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.050 0.950 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.279 20.749 1.038 29.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.322 5.322 3 C 0.370 3.630 4 O -0.447 6.447 5 C -0.132 4.132 6 C -0.123 4.123 7 C -0.145 4.145 8 Cl 0.003 6.997 9 C -0.043 4.043 10 Cl 0.052 6.948 11 N -0.121 5.121 12 H 0.296 0.704 13 C 0.025 3.975 14 C -0.202 4.202 15 C 0.043 3.957 16 N -0.362 5.362 17 C -0.373 4.373 18 H 0.103 0.897 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.216 1.216 23 H -0.226 1.226 24 H -0.189 1.189 25 C -0.188 4.188 26 H 0.106 0.894 27 H 0.133 0.867 28 H 0.105 0.895 29 H 0.180 0.820 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.202 0.798 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.952 20.543 0.949 29.358 hybrid contribution 0.774 -0.713 -0.352 1.109 sum -20.178 19.830 0.597 28.297 Atomic orbital electron populations 1.22577 0.77779 1.06223 1.03686 1.47842 1.08109 1.04766 1.71532 1.17278 0.86389 0.82771 0.76585 1.90888 1.14553 1.86996 1.52244 1.19988 0.82549 0.94609 1.16033 1.21255 0.99853 0.88717 1.02442 1.19680 0.92595 0.87134 1.15100 1.98352 1.98092 1.07007 1.96200 1.20752 0.89091 0.84607 1.09812 1.98443 1.19215 1.81124 1.96059 1.43075 1.08061 1.06777 1.54137 0.70410 1.22449 0.96199 0.80464 0.98389 1.24183 1.01692 0.95861 0.98466 1.21266 0.87656 0.92616 0.94208 1.42439 1.02792 1.10543 1.80419 1.19715 0.92563 0.88807 1.36199 0.89724 1.25644 0.95380 1.02528 1.03599 1.69845 0.97424 1.37665 1.57362 0.85110 0.77063 0.79906 0.77487 1.21574 1.22607 1.18852 1.23863 1.03020 0.95392 0.96553 0.89382 0.86732 0.89469 0.81961 0.90477 0.86413 0.93596 0.89986 0.79774 0.94091 0.93083 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 7.60 127.77 0.97 1.41 16 2 N -0.59 -13.92 3.08 -824.50 -2.54 -16.46 16 3 C 0.58 16.47 7.64 86.41 0.66 17.13 16 4 O -0.57 -21.94 16.37 -4.38 -0.07 -22.01 16 5 C -0.02 -0.38 6.64 40.31 0.27 -0.12 16 6 C -0.10 -2.10 10.66 22.58 0.24 -1.86 16 7 C -0.11 -2.07 6.66 22.06 0.15 -1.93 16 8 Cl -0.03 -0.44 29.12 -2.72 -0.08 -0.52 16 9 C 0.10 1.58 7.75 83.52 0.65 2.23 16 10 Cl 0.02 0.27 29.13 -2.72 -0.08 0.19 16 11 N -0.51 -7.19 5.05 -174.52 -0.88 -8.07 16 12 H 0.44 3.55 4.97 -92.70 -0.46 3.09 16 13 C 0.13 3.96 4.09 45.52 0.19 4.15 16 14 C -0.16 -4.74 7.30 31.18 0.23 -4.52 16 15 C 0.15 5.44 4.57 45.58 0.21 5.65 16 16 N -0.72 -35.77 5.31 -320.16 -1.70 -37.47 16 17 C -0.24 -13.05 9.97 84.03 0.84 -12.21 16 18 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 19 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 20 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 21 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 C -0.15 -4.34 7.34 31.12 0.23 -4.12 16 26 H 0.09 0.61 7.71 -2.39 -0.02 0.59 16 27 H 0.11 0.95 6.09 -2.39 -0.01 0.93 16 28 H 0.09 0.67 5.20 -2.39 -0.01 0.66 16 29 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.08 3.16 7.21 -2.39 -0.02 3.14 16 31 H 0.12 2.38 6.66 -2.39 -0.02 2.36 16 32 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 34 H 0.37 20.40 7.90 -92.71 -0.73 19.67 16 35 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.12 2.48 6.91 -2.39 -0.02 2.46 16 Total: -1.00 -72.78 338.94 2.00 -70.78 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.04 Total: 24.19 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.09 Total: 1.74 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -4.84 Total: -122.12 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.07 Total: -22.01 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.16 Total: -0.32 kcal Total: -72.78 2.00 -70.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999196787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.472 kcal (2) G-P(sol) polarization free energy of solvation -72.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds