Wall clock time and date at job start Tue Mar 31 2020 16:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99685 * 2 1 4 4 H 1.48507 * 109.46513 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47340 * 300.00026 * 3 2 1 6 6 H 1.48499 * 109.47235 * 60.00701 * 3 2 1 7 7 C 1.38817 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99589 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00076 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99937 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49191 * 324.99837 * 10 9 7 12 12 C 1.53039 * 109.52499 * 204.91842 * 10 9 7 13 13 C 1.53033 * 109.54008 * 178.66626 * 12 10 9 14 14 C 1.53193 * 109.31203 * 61.36195 * 13 12 10 15 15 N 1.46926 * 108.77650 * 305.36617 * 14 13 12 16 16 C 1.34776 * 120.63240 * 233.58558 * 15 14 13 17 17 O 1.21709 * 120.00550 * 173.24181 * 16 15 14 18 18 C 1.46549 * 120.00014 * 353.24674 * 16 15 14 19 19 C 1.37949 * 126.22647 * 156.55692 * 18 16 15 20 20 C 1.39794 * 107.13119 * 180.02562 * 19 18 16 21 21 Cl 1.73599 * 126.06176 * 179.97438 * 20 19 18 22 22 C 1.35717 * 107.87513 * 359.97438 * 20 19 18 23 23 Cl 1.73599 * 125.58595 * 180.02562 * 22 20 19 24 24 N 1.35671 * 108.82963 * 359.73221 * 22 20 19 25 25 H 0.96995 * 125.69472 * 180.30542 * 24 22 20 26 26 C 1.46920 * 118.73896 * 53.61036 * 15 14 13 27 27 H 0.96996 * 120.00645 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00248 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.45982 * 298.68490 * 12 10 9 30 30 H 1.08996 * 109.45888 * 58.64082 * 12 10 9 31 31 H 1.09002 * 109.49961 * 301.41410 * 13 12 10 32 32 H 1.09001 * 109.52778 * 181.32901 * 13 12 10 33 33 H 1.09000 * 109.58412 * 185.57987 * 14 13 12 34 34 H 1.08999 * 109.58582 * 65.15454 * 14 13 12 35 35 H 1.08008 * 126.43565 * 359.95899 * 19 18 16 36 36 H 1.08997 * 109.58833 * 186.60303 * 26 15 14 37 37 H 1.08995 * 109.59124 * 66.17453 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5510 -0.5899 12 6 1.1810 -4.7539 -0.6083 13 6 1.9578 -6.0720 -0.6389 14 6 2.3200 -6.4800 0.7926 15 7 3.0393 -5.3705 1.4329 16 6 4.2429 -5.5716 2.0051 17 8 4.8841 -4.6252 2.4228 18 6 4.7797 -6.9300 2.1243 19 6 6.1102 -7.2729 2.2480 20 6 6.1701 -8.6671 2.3312 21 17 7.6117 -9.6199 2.4973 22 6 4.9013 -9.1436 2.2592 23 17 4.4461 -10.8178 2.3187 24 7 4.0466 -8.0968 2.1395 25 1 3.0809 -8.1594 2.0733 26 6 2.4214 -4.0375 1.4382 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 0.2819 -4.8762 -0.0043 30 1 0.9007 -4.4738 -1.6236 31 1 2.8695 -5.9435 -1.2223 32 1 1.3414 -6.8477 -1.0934 33 1 2.9571 -7.3641 0.7703 34 1 1.4100 -6.6969 1.3520 35 1 6.9483 -6.5922 2.2743 36 1 3.1255 -3.3100 1.8420 37 1 1.5197 -4.0551 2.0502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999838974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:01 Heat of formation + Delta-G solvation = 24.737527 kcal Electronic energy + Delta-G solvation = -23599.231843 eV Core-core repulsion = 19850.916986 eV Total energy + Delta-G solvation = -3748.314857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01650 -39.62515 -37.47310 -37.18608 -36.76463 -34.67332 -32.54897 -31.68084 -31.22645 -29.73666 -28.18172 -25.63386 -24.13895 -22.57446 -22.06701 -21.34243 -20.72452 -19.84951 -18.03468 -17.16255 -16.88528 -15.94599 -15.81967 -15.08940 -14.92564 -14.63710 -14.36382 -14.23300 -13.79478 -13.65858 -13.58589 -13.35563 -12.98961 -12.56424 -12.49389 -12.26755 -12.11531 -11.82741 -11.48674 -11.19973 -11.16054 -10.91582 -10.76632 -10.70304 -10.23861 -10.12659 -9.91494 -9.73033 -9.35592 -9.17443 -8.68647 -8.46350 -7.07109 -5.84007 -3.14371 0.92832 1.06616 1.77791 1.91046 2.71658 2.90300 3.22239 3.41782 3.48626 3.50866 4.25073 4.47747 4.52681 4.59663 4.84638 4.98073 5.00543 5.28724 5.31269 5.39452 5.42625 5.67013 5.75345 5.85190 5.87446 6.02644 6.04849 6.10373 6.21249 6.34556 6.48146 6.58807 6.71283 6.87952 7.36681 7.68043 8.06789 8.33792 9.46078 9.98563 10.33707 11.38139 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.002707 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.862884 B =10340.485745 C =11245.129348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.053 0.947 12 C -0.126 4.126 13 C -0.127 4.127 14 C 0.088 3.912 15 N -0.602 5.602 16 C 0.583 3.417 17 O -0.515 6.515 18 C -0.002 4.002 19 C -0.094 4.094 20 C -0.095 4.095 21 Cl -0.030 7.030 22 C 0.088 3.912 23 Cl 0.001 6.999 24 N -0.524 5.524 25 H 0.431 0.569 26 C 0.092 3.908 27 H 0.256 0.744 28 H 0.386 0.614 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.042 -24.243 3.098 25.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.071 0.929 12 C -0.165 4.165 13 C -0.166 4.166 14 C -0.036 4.036 15 N -0.335 5.335 16 C 0.369 3.631 17 O -0.390 6.390 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.130 4.130 21 Cl -0.002 7.002 22 C -0.056 4.056 23 Cl 0.030 6.970 24 N -0.131 5.131 25 H 0.276 0.724 26 C -0.031 4.031 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.185 0.815 36 H 0.113 0.887 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.381 -23.737 3.317 25.079 hybrid contribution -0.406 0.459 0.033 0.614 sum 6.975 -23.278 3.351 24.531 Atomic orbital electron populations 1.69666 1.05157 1.25760 1.57378 1.24758 0.95522 0.97828 1.02496 0.86115 0.79030 0.83884 0.77194 1.20328 1.21816 1.21748 1.19321 0.91182 0.83884 1.43136 0.90877 1.42378 1.05804 0.99547 1.88038 1.20490 0.95056 0.86515 0.92260 0.92881 1.21834 0.98634 0.93883 1.02136 1.21850 1.01275 0.98534 0.94947 1.22153 0.96799 0.89342 0.95299 1.48241 1.18353 1.11661 1.55280 1.16926 0.81275 0.85883 0.78971 1.90902 1.57712 1.41173 1.49187 1.20602 0.91289 0.85580 1.14155 1.21150 0.95354 0.92524 1.03011 1.19612 0.86496 0.92026 1.14853 1.98350 1.34447 1.70776 1.96588 1.20619 0.89232 0.83064 1.12655 1.98424 1.92788 1.08763 1.97074 1.42719 1.09664 1.04285 1.56416 0.72397 1.22927 0.97854 0.80785 1.01570 0.93460 0.78046 0.91937 0.91099 0.91211 0.90741 0.90480 0.90881 0.81497 0.88656 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.11 5.12 -53.31 -0.27 -17.38 16 10 C 0.17 3.14 2.92 -67.81 -0.20 2.94 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.82 5.36 -26.69 -0.14 -1.96 16 13 C -0.13 -1.35 6.08 -26.61 -0.16 -1.52 16 14 C 0.09 0.86 5.31 -3.71 -0.02 0.84 16 15 N -0.60 -8.37 2.97 -174.36 -0.52 -8.89 16 16 C 0.58 8.75 7.62 -12.91 -0.10 8.65 16 17 O -0.51 -9.80 16.39 5.18 0.08 -9.72 16 18 C 0.00 -0.03 6.38 -81.93 -0.52 -0.55 16 19 C -0.09 -1.08 10.72 -39.11 -0.42 -1.50 16 20 C -0.09 -0.99 6.66 -39.90 -0.27 -1.25 16 21 Cl -0.03 -0.29 29.12 -51.86 -1.51 -1.80 16 22 C 0.09 0.81 7.75 -16.76 -0.13 0.68 16 23 Cl 0.00 0.01 29.13 -51.86 -1.51 -1.50 16 24 N -0.52 -4.68 4.76 -6.51 -0.03 -4.72 16 25 H 0.43 2.86 6.40 -40.82 -0.26 2.60 16 26 C 0.09 1.62 6.03 -3.71 -0.02 1.60 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.39 9.68 7.80 -40.82 -0.32 9.37 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.61 4.21 -51.93 -0.22 0.39 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.10 1.98 7.00 -51.93 -0.36 1.61 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -31.07 338.21 -9.27 -40.34 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.09 Total: 7.25 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.23 Total: 0.78 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.10 Total: -57.73 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -3.02 Total: -3.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.07 -9.27 -40.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999838974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.082 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds