Wall clock time and date at job start Tue Mar 31 2020 16:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99685 * 2 1 4 4 H 1.48507 * 109.46513 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47340 * 300.00026 * 3 2 1 6 6 H 1.48499 * 109.47235 * 60.00701 * 3 2 1 7 7 C 1.38817 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99589 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00076 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99937 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49191 * 324.99837 * 10 9 7 12 12 C 1.53039 * 109.52499 * 204.91842 * 10 9 7 13 13 C 1.53033 * 109.54008 * 178.66626 * 12 10 9 14 14 C 1.53193 * 109.31203 * 61.36195 * 13 12 10 15 15 N 1.46926 * 108.77650 * 305.36617 * 14 13 12 16 16 C 1.34776 * 120.63240 * 233.58558 * 15 14 13 17 17 O 1.21709 * 120.00550 * 173.24181 * 16 15 14 18 18 C 1.46549 * 120.00014 * 353.24674 * 16 15 14 19 19 C 1.37949 * 126.22647 * 156.55692 * 18 16 15 20 20 C 1.39794 * 107.13119 * 180.02562 * 19 18 16 21 21 Cl 1.73599 * 126.06176 * 179.97438 * 20 19 18 22 22 C 1.35717 * 107.87513 * 359.97438 * 20 19 18 23 23 Cl 1.73599 * 125.58595 * 180.02562 * 22 20 19 24 24 N 1.35671 * 108.82963 * 359.73221 * 22 20 19 25 25 H 0.96995 * 125.69472 * 180.30542 * 24 22 20 26 26 C 1.46920 * 118.73896 * 53.61036 * 15 14 13 27 27 H 0.96996 * 120.00645 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00248 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.45982 * 298.68490 * 12 10 9 30 30 H 1.08996 * 109.45888 * 58.64082 * 12 10 9 31 31 H 1.09002 * 109.49961 * 301.41410 * 13 12 10 32 32 H 1.09001 * 109.52778 * 181.32901 * 13 12 10 33 33 H 1.09000 * 109.58412 * 185.57987 * 14 13 12 34 34 H 1.08999 * 109.58582 * 65.15454 * 14 13 12 35 35 H 1.08008 * 126.43565 * 359.95899 * 19 18 16 36 36 H 1.08997 * 109.58833 * 186.60303 * 26 15 14 37 37 H 1.08995 * 109.59124 * 66.17453 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9689 -3.5510 -0.5899 12 6 1.1810 -4.7539 -0.6083 13 6 1.9578 -6.0720 -0.6389 14 6 2.3200 -6.4800 0.7926 15 7 3.0393 -5.3705 1.4329 16 6 4.2429 -5.5716 2.0051 17 8 4.8841 -4.6252 2.4228 18 6 4.7797 -6.9300 2.1243 19 6 6.1102 -7.2729 2.2480 20 6 6.1701 -8.6671 2.3312 21 17 7.6117 -9.6199 2.4973 22 6 4.9013 -9.1436 2.2592 23 17 4.4461 -10.8178 2.3187 24 7 4.0466 -8.0968 2.1395 25 1 3.0809 -8.1594 2.0733 26 6 2.4214 -4.0375 1.4382 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3881 0.0002 29 1 0.2819 -4.8762 -0.0043 30 1 0.9007 -4.4738 -1.6236 31 1 2.8695 -5.9435 -1.2223 32 1 1.3414 -6.8477 -1.0934 33 1 2.9571 -7.3641 0.7703 34 1 1.4100 -6.6969 1.3520 35 1 6.9483 -6.5922 2.2743 36 1 3.1255 -3.3100 1.8420 37 1 1.5197 -4.0551 2.0502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999838974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:00 Heat of formation + Delta-G solvation = 4.891980 kcal Electronic energy + Delta-G solvation = -23600.092411 eV Core-core repulsion = 19850.916986 eV Total energy + Delta-G solvation = -3749.175424 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.90245 -40.78050 -38.75478 -37.91517 -37.53544 -36.31798 -34.06688 -32.85962 -32.41807 -30.90465 -29.60997 -26.77659 -25.95079 -23.60749 -23.41559 -22.22541 -21.67407 -21.12165 -19.26901 -18.95100 -17.91406 -17.06944 -16.99408 -16.49000 -15.95489 -15.85245 -15.58642 -15.40012 -15.22104 -15.12310 -14.62261 -14.39948 -14.15942 -14.02841 -13.74333 -13.17209 -12.99362 -12.93539 -12.86542 -12.58645 -12.47865 -12.17803 -12.05038 -11.99460 -11.94246 -11.75173 -11.38697 -11.30273 -11.08940 -10.19646 -9.91490 -9.39917 -9.03353 -7.99580 -5.28499 0.01833 0.29415 0.99384 1.05881 1.44413 1.46013 1.55636 1.67667 1.89691 2.25646 2.53115 3.29719 3.35090 3.60607 3.70409 3.94666 3.95514 4.01180 4.19266 4.23408 4.33668 4.44202 4.45795 4.64684 4.78578 4.83337 4.92603 5.02324 5.09184 5.20329 5.32059 5.39909 5.42158 5.52028 5.82215 6.23208 6.23772 6.89697 7.30651 8.02215 8.27246 9.23115 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.002707 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.862884 B =10340.485745 C =11245.129348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.066 0.934 9 N -0.728 5.728 10 C 0.166 3.834 11 H 0.031 0.969 12 C -0.118 4.118 13 C -0.119 4.119 14 C 0.083 3.917 15 N -0.599 5.599 16 C 0.582 3.418 17 O -0.567 6.567 18 C -0.015 4.015 19 C -0.096 4.096 20 C -0.108 4.108 21 Cl -0.024 7.024 22 C 0.105 3.895 23 Cl 0.024 6.976 24 N -0.508 5.508 25 H 0.443 0.557 26 C 0.108 3.892 27 H 0.253 0.747 28 H 0.378 0.622 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.164 0.836 36 H 0.054 0.946 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 -27.296 2.938 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.368 5.368 10 C 0.056 3.944 11 H 0.049 0.951 12 C -0.156 4.156 13 C -0.158 4.158 14 C -0.039 4.039 15 N -0.331 5.331 16 C 0.371 3.629 17 O -0.446 6.446 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.142 4.142 21 Cl 0.005 6.995 22 C -0.040 4.040 23 Cl 0.053 6.947 24 N -0.116 5.116 25 H 0.291 0.709 26 C -0.017 4.017 27 H 0.062 0.938 28 H 0.211 0.789 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.181 0.819 36 H 0.073 0.927 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.200 -26.865 3.141 27.990 hybrid contribution -0.296 1.236 0.083 1.274 sum 6.904 -25.628 3.225 26.737 Atomic orbital electron populations 1.69783 1.06277 1.26103 1.59161 1.25455 0.96360 1.00727 1.03419 0.85192 0.78120 0.80293 0.76892 1.19755 1.21603 1.21863 1.19542 0.91068 0.85424 1.41481 0.91620 1.42497 1.05549 1.00537 1.88238 1.20663 0.94717 0.86135 0.92880 0.95087 1.21737 0.98540 0.94132 1.01237 1.21842 1.01037 0.97297 0.95611 1.22522 0.98111 0.88401 0.94847 1.48199 1.18335 1.11279 1.55273 1.17277 0.80902 0.86652 0.78062 1.90873 1.59177 1.43146 1.51431 1.19921 0.91574 0.84794 1.16572 1.21243 0.95314 0.93294 1.02371 1.19634 0.87325 0.91653 1.15625 1.98353 1.34186 1.70380 1.96593 1.20697 0.88892 0.83948 1.10418 1.98445 1.92573 1.06879 1.96848 1.42561 1.10178 1.03196 1.55634 0.70887 1.22340 0.96980 0.82202 1.00187 0.93837 0.78908 0.90902 0.91919 0.92029 0.86647 0.88028 0.87818 0.81858 0.92729 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.94 13.06 21.65 0.28 -57.65 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.24 -13.60 9.93 84.04 0.83 -12.77 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -35.69 5.12 -322.56 -1.65 -37.34 16 10 C 0.17 6.29 2.92 45.07 0.13 6.42 16 11 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 12 C -0.12 -3.21 5.36 30.62 0.16 -3.05 16 13 C -0.12 -2.14 6.08 30.67 0.19 -1.96 16 14 C 0.08 1.34 5.31 86.36 0.46 1.80 16 15 N -0.60 -16.15 2.97 -823.77 -2.45 -18.60 16 16 C 0.58 17.48 7.62 86.41 0.66 18.14 16 17 O -0.57 -22.59 16.39 -4.38 -0.07 -22.66 16 18 C -0.01 -0.33 6.38 40.30 0.26 -0.07 16 19 C -0.10 -2.10 10.72 22.58 0.24 -1.86 16 20 C -0.11 -2.02 6.66 22.06 0.15 -1.87 16 21 Cl -0.02 -0.41 29.12 -2.72 -0.08 -0.49 16 22 C 0.11 1.64 7.75 83.51 0.65 2.29 16 23 Cl 0.02 0.29 29.13 -2.72 -0.08 0.21 16 24 N -0.51 -7.54 4.76 -174.51 -0.83 -8.37 16 25 H 0.44 4.09 6.40 -92.71 -0.59 3.49 16 26 C 0.11 3.86 6.03 86.36 0.52 4.38 16 27 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.38 19.44 7.80 -92.71 -0.72 18.72 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.19 4.21 -2.39 -0.01 1.18 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 36 H 0.05 2.40 7.00 -2.39 -0.02 2.38 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -70.36 338.21 1.69 -68.67 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -0.18 Total: 19.33 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 4.71 Total: 8.08 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -4.65 Total: -121.97 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.07 Total: -22.66 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.16 Total: -0.28 kcal Total: -70.36 1.69 -68.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999838974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.561 kcal (2) G-P(sol) polarization free energy of solvation -70.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds