Wall clock time and date at job start Tue Mar 31 2020 16:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00417 * 2 1 4 4 H 1.48497 * 109.47193 * 270.00134 * 3 2 1 5 5 H 1.48503 * 109.47075 * 149.99935 * 3 2 1 6 6 H 1.48503 * 109.46931 * 29.99972 * 3 2 1 7 7 C 1.38814 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99738 * 155.02353 * 7 2 1 9 9 N 1.36936 * 120.00017 * 335.02747 * 7 2 1 10 10 C 1.46929 * 120.62950 * 152.50689 * 9 7 2 11 11 C 1.53194 * 108.77452 * 126.36836 * 10 9 7 12 12 C 1.53048 * 109.31362 * 54.63270 * 11 10 9 13 13 C 1.53035 * 109.53493 * 298.63210 * 12 11 10 14 14 H 1.08999 * 109.50247 * 301.38395 * 13 12 11 15 15 N 1.46501 * 109.49594 * 181.32052 * 13 12 11 16 16 C 1.34774 * 119.99970 * 155.00301 * 15 13 12 17 17 O 1.21713 * 120.00329 * 359.97438 * 16 15 13 18 18 C 1.46555 * 119.99672 * 179.97438 * 16 15 13 19 19 C 1.37958 * 126.21697 * 179.68587 * 18 16 15 20 20 C 1.39799 * 107.12166 * 179.90334 * 19 18 16 21 21 Cl 1.73598 * 126.05995 * 180.13313 * 20 19 18 22 22 C 1.35718 * 107.87638 * 0.36408 * 20 19 18 23 23 Cl 1.73596 * 125.58453 * 179.80696 * 22 20 19 24 24 N 1.35666 * 108.82973 * 359.77381 * 22 20 19 25 25 H 0.97001 * 125.68712 * 180.02562 * 24 22 20 26 26 C 1.46929 * 120.63097 * 332.22092 * 9 7 2 27 27 H 0.96992 * 120.00199 * 174.25837 * 1 2 3 28 28 H 1.09008 * 109.58263 * 246.15138 * 10 9 7 29 29 H 1.08989 * 109.58735 * 6.57581 * 10 9 7 30 30 H 1.08999 * 109.49360 * 174.57875 * 11 10 9 31 31 H 1.09001 * 109.49568 * 294.64321 * 11 10 9 32 32 H 1.08998 * 109.45862 * 58.65790 * 12 11 10 33 33 H 1.08999 * 109.45604 * 178.62954 * 12 11 10 34 34 H 0.97003 * 119.99721 * 335.00073 * 15 13 12 35 35 H 1.07994 * 126.43933 * 0.02562 * 19 18 16 36 36 H 1.09005 * 109.58534 * 353.42361 * 26 9 7 37 37 H 1.08999 * 109.58601 * 113.84360 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 3.5479 1.4400 0.7001 6 1 1.4478 2.6527 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0144 -1.2461 -0.3944 9 7 1.4215 -2.3324 0.5017 10 6 1.8121 -3.6608 0.0102 11 6 2.2020 -4.5343 1.2068 12 6 1.0526 -4.5509 2.2172 13 6 0.7936 -3.1292 2.7210 14 1 1.7004 -2.7348 3.1795 15 7 -0.2856 -3.1505 3.7115 16 6 -0.3649 -2.1794 4.6427 17 8 0.4603 -1.2849 4.6611 18 6 -1.4449 -2.2005 5.6332 19 6 -1.6442 -1.2803 6.6415 20 6 -2.7839 -1.6810 7.3450 21 17 -3.4785 -0.8687 8.7130 22 6 -3.2479 -2.8204 6.7721 23 17 -4.6442 -3.7140 7.2873 24 7 -2.4423 -3.1463 5.7304 25 1 -2.5506 -3.9163 5.1505 26 6 0.3917 -2.2401 1.5456 27 1 -0.4850 -0.8357 -0.0840 28 1 0.9738 -4.1164 -0.5170 29 1 2.6624 -3.5651 -0.6649 30 1 2.4013 -5.5502 0.8659 31 1 3.0961 -4.1268 1.6786 32 1 0.1528 -4.9357 1.7373 33 1 1.3179 -5.1913 3.0584 34 1 -0.9431 -3.8636 3.6971 35 1 -1.0354 -0.4123 6.8474 36 1 0.3052 -1.2073 1.8833 37 1 -0.5647 -2.5774 1.1462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008113562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:00 Heat of formation + Delta-G solvation = 13.673782 kcal Electronic energy + Delta-G solvation = -23697.196296 eV Core-core repulsion = 19948.401679 eV Total energy + Delta-G solvation = -3748.794617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72784 -39.38832 -37.53031 -37.11797 -36.67580 -34.50487 -33.00704 -31.45819 -30.21701 -29.77058 -28.45707 -25.18384 -23.68345 -22.16895 -21.86094 -20.97354 -20.48737 -19.80176 -18.83061 -17.44012 -16.45912 -15.78702 -15.66535 -15.02108 -14.77477 -14.39132 -14.16108 -14.01372 -13.73757 -13.56055 -13.47447 -13.45152 -12.76365 -12.34597 -12.19910 -12.09110 -12.05343 -11.75768 -11.21788 -11.12893 -11.01250 -10.65773 -10.43910 -10.38518 -10.08852 -9.96136 -9.84323 -9.42882 -9.28439 -8.90059 -8.49610 -8.35654 -6.91343 -6.07420 -3.24284 1.00218 1.13030 1.85707 1.99590 2.86631 3.18911 3.32767 3.52916 3.60864 3.74604 4.54617 4.61074 4.68211 5.08739 5.15482 5.24984 5.31123 5.40322 5.45510 5.54025 5.83813 5.91975 5.93436 6.08194 6.17148 6.21394 6.24946 6.44761 6.52395 6.61197 6.64958 6.72721 6.93749 7.18839 7.55229 8.00371 8.24446 8.56556 9.08507 9.83193 10.25030 11.21138 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.003203 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.164566 B = 8739.741524 C = 9946.995670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.018 4.018 3 Si 1.064 2.936 4 H -0.294 1.294 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.355 4.355 8 H 0.057 0.943 9 N -0.594 5.594 10 C 0.144 3.856 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.123 3.877 14 H 0.090 0.910 15 N -0.719 5.719 16 C 0.584 3.416 17 O -0.504 6.504 18 C -0.005 4.005 19 C -0.090 4.090 20 C -0.096 4.096 21 Cl -0.030 7.030 22 C 0.093 3.907 23 Cl 0.000 7.000 24 N -0.522 5.522 25 H 0.426 0.574 26 C 0.145 3.855 27 H 0.267 0.733 28 H 0.017 0.983 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.387 0.613 35 H 0.169 0.831 36 H 0.088 0.912 37 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.556 -11.168 14.405 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.220 4.220 3 Si 0.894 3.106 4 H -0.222 1.222 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.484 4.484 8 H 0.075 0.925 9 N -0.318 5.318 10 C 0.018 3.982 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.018 3.982 14 H 0.108 0.892 15 N -0.370 5.370 16 C 0.369 3.631 17 O -0.378 6.378 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.131 4.131 21 Cl -0.001 7.001 22 C -0.051 4.051 23 Cl 0.029 6.971 24 N -0.124 5.124 25 H 0.266 0.734 26 C 0.018 3.982 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.219 0.781 35 H 0.187 0.813 36 H 0.106 0.894 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -7.242 -8.954 14.484 18.505 hybrid contribution -0.589 -2.618 -0.218 2.692 sum -7.831 -11.572 14.266 19.969 Atomic orbital electron populations 1.70773 1.06714 1.30180 1.47369 1.25855 0.96440 1.01535 0.98218 0.83561 0.74929 0.75911 0.76224 1.22184 1.21726 1.21019 1.19939 0.97690 0.88419 1.42311 0.92487 1.44024 1.46292 1.01528 1.39917 1.20961 0.97668 0.86333 0.93269 1.22002 0.97735 0.99587 0.97761 1.21682 0.99546 0.95487 0.98700 1.21853 0.89843 0.96930 0.89527 0.89214 1.46017 1.31696 1.27266 1.31975 1.16800 0.83539 0.82755 0.80010 1.90949 1.39770 1.34691 1.72391 1.20693 0.94358 0.93975 1.02872 1.21186 0.96442 1.00285 0.93710 1.19597 0.99773 0.96424 0.97319 1.98347 1.83466 1.77884 1.40443 1.20521 0.92901 0.96758 0.94923 1.98420 1.35966 1.74220 1.88524 1.41885 1.21859 1.23502 1.25139 0.73395 1.21188 0.90570 0.99833 0.86597 0.92204 0.96539 0.92337 0.92373 0.91865 0.92251 0.92722 0.78078 0.81334 0.89387 0.96727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.58 12.41 55.49 0.69 -26.89 16 2 C -0.02 -0.52 4.69 -17.43 -0.08 -0.60 16 3 Si 1.06 26.02 29.99 -169.99 -5.10 20.93 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.35 -9.95 9.49 -15.06 -0.14 -10.09 16 8 H 0.06 1.60 7.94 -52.49 -0.42 1.18 16 9 N -0.59 -14.65 2.86 -172.58 -0.49 -15.15 16 10 C 0.14 2.89 6.52 -3.71 -0.02 2.86 16 11 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 12 C -0.12 -1.70 5.36 -26.69 -0.14 -1.84 16 13 C 0.12 2.22 2.59 -68.03 -0.18 2.04 16 14 H 0.09 1.87 7.57 -51.93 -0.39 1.47 16 15 N -0.72 -10.45 5.08 -55.25 -0.28 -10.73 16 16 C 0.58 9.56 7.75 -12.91 -0.10 9.46 16 17 O -0.50 -10.63 16.54 5.18 0.09 -10.54 16 18 C 0.00 -0.06 7.06 -81.93 -0.58 -0.64 16 19 C -0.09 -1.17 10.64 -39.10 -0.42 -1.59 16 20 C -0.10 -1.12 6.66 -39.90 -0.27 -1.39 16 21 Cl -0.03 -0.32 29.12 -51.86 -1.51 -1.83 16 22 C 0.09 0.97 7.75 -16.76 -0.13 0.84 16 23 Cl 0.00 0.00 29.13 -51.86 -1.51 -1.51 16 24 N -0.52 -5.11 6.00 -6.51 -0.04 -5.15 16 25 H 0.43 2.85 8.19 -40.82 -0.33 2.52 16 26 C 0.15 3.34 4.24 -3.93 -0.02 3.33 16 27 H 0.27 8.10 6.72 -40.82 -0.27 7.82 16 28 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.39 4.06 7.73 -40.82 -0.32 3.75 16 35 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.09 2.42 6.30 -51.93 -0.33 2.10 16 37 H 0.01 0.34 7.87 -51.93 -0.41 -0.07 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -32.97 340.28 -9.48 -42.45 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.21 Total: 3.18 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.24 Total: 0.12 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.12 Total: -57.91 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.10 Total: 20.93 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -3.02 Total: -3.34 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.97 -9.48 -42.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008113562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.119 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds