Wall clock time and date at job start Tue Mar 31 2020 16:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00417 * 2 1 4 4 H 1.48497 * 109.47193 * 270.00134 * 3 2 1 5 5 H 1.48503 * 109.47075 * 149.99935 * 3 2 1 6 6 H 1.48503 * 109.46931 * 29.99972 * 3 2 1 7 7 C 1.38814 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99738 * 155.02353 * 7 2 1 9 9 N 1.36936 * 120.00017 * 335.02747 * 7 2 1 10 10 C 1.46929 * 120.62950 * 152.50689 * 9 7 2 11 11 C 1.53194 * 108.77452 * 126.36836 * 10 9 7 12 12 C 1.53048 * 109.31362 * 54.63270 * 11 10 9 13 13 C 1.53035 * 109.53493 * 298.63210 * 12 11 10 14 14 H 1.08999 * 109.50247 * 301.38395 * 13 12 11 15 15 N 1.46501 * 109.49594 * 181.32052 * 13 12 11 16 16 C 1.34774 * 119.99970 * 155.00301 * 15 13 12 17 17 O 1.21713 * 120.00329 * 359.97438 * 16 15 13 18 18 C 1.46555 * 119.99672 * 179.97438 * 16 15 13 19 19 C 1.37958 * 126.21697 * 179.68587 * 18 16 15 20 20 C 1.39799 * 107.12166 * 179.90334 * 19 18 16 21 21 Cl 1.73598 * 126.05995 * 180.13313 * 20 19 18 22 22 C 1.35718 * 107.87638 * 0.36408 * 20 19 18 23 23 Cl 1.73596 * 125.58453 * 179.80696 * 22 20 19 24 24 N 1.35666 * 108.82973 * 359.77381 * 22 20 19 25 25 H 0.97001 * 125.68712 * 180.02562 * 24 22 20 26 26 C 1.46929 * 120.63097 * 332.22092 * 9 7 2 27 27 H 0.96992 * 120.00199 * 174.25837 * 1 2 3 28 28 H 1.09008 * 109.58263 * 246.15138 * 10 9 7 29 29 H 1.08989 * 109.58735 * 6.57581 * 10 9 7 30 30 H 1.08999 * 109.49360 * 174.57875 * 11 10 9 31 31 H 1.09001 * 109.49568 * 294.64321 * 11 10 9 32 32 H 1.08998 * 109.45862 * 58.65790 * 12 11 10 33 33 H 1.08999 * 109.45604 * 178.62954 * 12 11 10 34 34 H 0.97003 * 119.99721 * 335.00073 * 15 13 12 35 35 H 1.07994 * 126.43933 * 0.02562 * 19 18 16 36 36 H 1.09005 * 109.58534 * 353.42361 * 26 9 7 37 37 H 1.08999 * 109.58601 * 113.84360 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 3.5479 1.4400 0.7001 6 1 1.4478 2.6527 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0144 -1.2461 -0.3944 9 7 1.4215 -2.3324 0.5017 10 6 1.8121 -3.6608 0.0102 11 6 2.2020 -4.5343 1.2068 12 6 1.0526 -4.5509 2.2172 13 6 0.7936 -3.1292 2.7210 14 1 1.7004 -2.7348 3.1795 15 7 -0.2856 -3.1505 3.7115 16 6 -0.3649 -2.1794 4.6427 17 8 0.4603 -1.2849 4.6611 18 6 -1.4449 -2.2005 5.6332 19 6 -1.6442 -1.2803 6.6415 20 6 -2.7839 -1.6810 7.3450 21 17 -3.4785 -0.8687 8.7130 22 6 -3.2479 -2.8204 6.7721 23 17 -4.6442 -3.7140 7.2873 24 7 -2.4423 -3.1463 5.7304 25 1 -2.5506 -3.9163 5.1505 26 6 0.3917 -2.2401 1.5456 27 1 -0.4850 -0.8357 -0.0840 28 1 0.9738 -4.1164 -0.5170 29 1 2.6624 -3.5651 -0.6649 30 1 2.4013 -5.5502 0.8659 31 1 3.0961 -4.1268 1.6786 32 1 0.1528 -4.9357 1.7373 33 1 1.3179 -5.1913 3.0584 34 1 -0.9431 -3.8636 3.6971 35 1 -1.0354 -0.4123 6.8474 36 1 0.3052 -1.2073 1.8833 37 1 -0.5647 -2.5774 1.1462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008113562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:00 Heat of formation + Delta-G solvation = -8.750852 kcal Electronic energy + Delta-G solvation = -23698.168701 eV Core-core repulsion = 19948.401679 eV Total energy + Delta-G solvation = -3749.767022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.71288 -40.75675 -39.08058 -37.94898 -37.55435 -36.13130 -34.69313 -32.44369 -31.82152 -31.30733 -29.70874 -27.11749 -24.95639 -23.90037 -23.15850 -21.97749 -21.61768 -21.25997 -20.09885 -19.41747 -17.55350 -17.22012 -16.79855 -16.30480 -16.10904 -15.90681 -15.68613 -15.33912 -15.25239 -15.06878 -14.83273 -14.49985 -14.26507 -14.05044 -13.55708 -13.13849 -13.03192 -12.90849 -12.58888 -12.54577 -12.50391 -12.02137 -11.98001 -11.89800 -11.85729 -11.73126 -11.32454 -11.27981 -10.50014 -10.38143 -10.20340 -9.44504 -8.94429 -8.27422 -5.42744 -0.02576 0.25635 0.97994 1.01424 1.52715 1.63345 1.78655 1.79367 2.08679 2.15072 2.62712 3.20574 3.49791 3.64089 3.68289 3.80758 4.01543 4.09792 4.18253 4.32295 4.41525 4.41778 4.68960 4.74813 4.92669 4.98054 5.02920 5.07167 5.10621 5.15549 5.20531 5.31923 5.49854 5.81707 5.84447 6.35419 6.37708 6.99526 7.04932 7.74816 8.17765 8.97285 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.003203 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.164566 B = 8739.741524 C = 9946.995670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.071 4.071 3 Si 1.107 2.893 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.294 1.294 7 C -0.358 4.358 8 H 0.052 0.948 9 N -0.616 5.616 10 C 0.136 3.864 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.137 3.863 14 H 0.058 0.942 15 N -0.703 5.703 16 C 0.585 3.415 17 O -0.562 6.562 18 C -0.019 4.019 19 C -0.096 4.096 20 C -0.110 4.110 21 Cl -0.022 7.022 22 C 0.110 3.890 23 Cl 0.025 6.975 24 N -0.503 5.503 25 H 0.442 0.558 26 C 0.157 3.843 27 H 0.254 0.746 28 H 0.024 0.976 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.411 0.589 35 H 0.162 0.838 36 H 0.034 0.966 37 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 -13.822 15.325 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.268 4.268 3 Si 0.932 3.068 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.220 1.220 7 C -0.488 4.488 8 H 0.069 0.931 9 N -0.341 5.341 10 C 0.012 3.988 11 C -0.161 4.161 12 C -0.144 4.144 13 C 0.031 3.969 14 H 0.077 0.923 15 N -0.354 5.354 16 C 0.372 3.628 17 O -0.439 6.439 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.145 4.145 21 Cl 0.006 6.994 22 C -0.036 4.036 23 Cl 0.054 6.946 24 N -0.105 5.105 25 H 0.285 0.715 26 C 0.030 3.970 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.247 0.753 35 H 0.180 0.820 36 H 0.052 0.948 37 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -7.950 -11.708 15.387 20.905 hybrid contribution -0.456 -1.866 -0.467 1.977 sum -8.406 -13.574 14.920 21.852 Atomic orbital electron populations 1.70874 1.07581 1.29334 1.50280 1.27052 0.96602 1.04688 0.98464 0.82989 0.74160 0.72538 0.77145 1.20145 1.20472 1.22002 1.20188 0.97451 0.89932 1.41193 0.93061 1.44276 1.46418 1.02503 1.40915 1.21185 0.97544 0.84869 0.95245 1.21898 0.97593 1.00595 0.96027 1.21662 0.99994 0.93061 0.99700 1.21385 0.89246 0.98334 0.87907 0.92327 1.45718 1.31488 1.27596 1.30623 1.17163 0.83444 0.81894 0.80295 1.90920 1.42156 1.36864 1.73999 1.20021 0.94907 0.95613 1.02765 1.21270 0.96913 1.00160 0.93938 1.19621 0.99747 0.97168 0.97955 1.98348 1.83208 1.77870 1.39956 1.20615 0.92831 0.96136 0.93969 1.98441 1.34459 1.73505 1.88221 1.41727 1.20590 1.23205 1.25008 0.71457 1.20948 0.90155 0.97921 0.88022 0.93640 0.95766 0.93090 0.88191 0.93088 0.90197 0.88970 0.75262 0.82041 0.94774 0.97317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.19 12.41 21.65 0.27 -58.92 16 2 C -0.07 -4.22 4.69 84.86 0.40 -3.83 16 3 Si 1.11 54.03 29.99 68.60 2.06 56.08 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 7 C -0.36 -20.64 9.49 84.03 0.80 -19.85 16 8 H 0.05 2.95 7.94 -2.91 -0.02 2.92 16 9 N -0.62 -31.01 2.86 -699.91 -2.00 -33.01 16 10 C 0.14 5.34 6.52 86.36 0.56 5.90 16 11 C -0.12 -3.54 6.08 30.68 0.19 -3.35 16 12 C -0.11 -2.75 5.36 30.62 0.16 -2.58 16 13 C 0.14 4.89 2.59 44.92 0.12 5.01 16 14 H 0.06 2.49 7.57 -2.39 -0.02 2.47 16 15 N -0.70 -19.78 5.08 -446.93 -2.27 -22.05 16 16 C 0.58 19.42 7.75 86.41 0.67 20.09 16 17 O -0.56 -24.95 16.54 -4.39 -0.07 -25.02 16 18 C -0.02 -0.48 7.06 40.31 0.28 -0.20 16 19 C -0.10 -2.50 10.64 22.58 0.24 -2.26 16 20 C -0.11 -2.45 6.66 22.06 0.15 -2.30 16 21 Cl -0.02 -0.45 29.12 -2.72 -0.08 -0.53 16 22 C 0.11 2.05 7.75 83.52 0.65 2.70 16 23 Cl 0.03 0.37 29.13 -2.72 -0.08 0.29 16 24 N -0.50 -8.76 6.00 -174.52 -1.05 -9.81 16 25 H 0.44 4.55 8.19 -92.71 -0.76 3.79 16 26 C 0.16 7.42 4.24 86.22 0.37 7.78 16 27 H 0.25 16.11 6.72 -92.71 -0.62 15.48 16 28 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.41 7.55 7.73 -92.71 -0.72 6.83 16 35 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.03 1.98 6.30 -2.38 -0.02 1.96 16 37 H 0.01 0.42 7.87 -2.39 -0.02 0.40 16 Total: -1.00 -76.56 340.28 1.16 -75.39 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -0.19 Total: 10.47 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 4.58 Total: 7.11 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -5.05 Total: -123.78 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.07 Total: -25.02 kcal Atomic # 14 Polarization: 54.03 SS G_CDS: 2.06 Total: 56.08 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.16 Total: -0.25 kcal Total: -76.56 1.16 -75.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008113562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.641 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds